RchiOBHm_Chr3g0493061

Belongs to the FPP GGPP synthase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0016407
Physical Location & Seq
Reverse (-)
40163395 .. 40164477
1083 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ45588

Sequence Viewer

Length: 1083 bp
ATGGCCCTTTTTGCAACGATTCAAAGCTATGAACATCCAGCTCTTCACAGAAACCCCATTATTTGTCCCAAAAGTCCCTCTAAAAACCCAGTTGGTAGCCTCAGATCAATTATAATTCCCATGAAAAACAAGTCCTTGTTACATGCACAAGTAGCTGACTCGTCTCTAGTCCAACCATTGCTCGCTGAAGATGAAGCCCTATTCGAGTTTGACGAATACATGGCCACCAAGGCCAAGAAGGTGGACAAAGCATTGAATGAGGCTGTGCCTTTGCAATATCCCAAGAAAATTCACAGGGCAATGAGATATTCCCTATTAGCAGGCGGAAAGCGTGTGCGTCCAGTTTTATGCATCGCTTCGTGTGAACTAGTTGGAGGGGATGAATCTTTAGCAATCCCAACAGCTTGTGCCATTGAAATGGTTCATACCATGTCACTTATTCACGATGACCTTCCTTGCATGGACAACGACGATCTTAGACGCGGAAAACCCACGAACCACAAGGCTTTCGGTGAAGAGACTGCAGTTCTAGCTGGTGATGCTCTTCTGTCACTTGCCTTTGAGCACATAGCAGCCAAGACCACAAATGTTTCACCTGAACGTGTGATTCAGACCATTGTGGAGCTCGGTTCAGCTGTTGGCTCGTTAGGCCTTGTTGCAGGTCAAATGGTGGACATTCACAGTGAGGGCAAGGAAGTAACACTGAGAGAGTTGGAGTACATTCATGTTCATAAAACTGCAAGACTCCTCGAGGCTTCTGTGGTTTGTGGAGCAATAATGGGAGGAGGGAATGAAATTGAAGTTGAAAAGATGAGGAAGTATGCAAGGTGTATAGGGCTTTTGTTTCAAGTTGTGGATGATATTTTGGACGTCACAAAGTCATCCGAAGAATTGGGAAAGACAGCCGGAAAAGACTTGGTGAGTGATAAGGCGACATATCCCAAGCTCATTGGCATCGAAGGGGCCAAGAACTTTGCTGCCGAATTAGTGGCTCAAGCAATAGAAGAGCTTGCTTATTTTGATGGTGCTAAGGCTGCTCCACTATATTATTTAGCTAATTATATTGCAAAAAGGCAGACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00900 ko01100 ko01110 ko01130 map00900 map01100 map01110 map01130
Pfam Domains
Protein Families
polyprenyl_synt

Protein Analysis

360

Amino Acids

39.12

Weight (kDa)

6.03

Isoelectric Point (pI)

44.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
polyprenyl_synt PF00348 95 - 331 5.8e-59 Polyprenyl synthetase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016407)

Species Orthologous Gene IDs
malus_domestica MD09G1264500.v1.1 MD17G1260500.v1.1
prunus_persica Prupe.3G162100_v2.0.a1
pyrus_communis pycom09g17810 pycom17g26120
rosa_chinensis RchiOBHm_Chr3g0493061
rosa_laevigata RLG00000022731
rosa_multiflora Rmu_sc0003941.1_g000014
rosa_roxburghii Rroxscaffold_6G00391880
rosa_rugosa Rorug03G0258800
rosa_samantha Rh3AG307900 Rh3BG343300 Rh3CG340700 Rh3DG343100
rosa_wichuraiana Rw3G027080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 113
AatII GACGTC 1 cut(s) 873
AbsI CCTCGAGG 1 cut(s) 749
Acc36I ACCTGC 1 cut(s) 650
AccII CGCG 1 cut(s) 483
AciI CCGC 2 cut(s) 324, 483
AcoI YGGCCR 1 cut(s) 222
AcsI RAATTY 1 cut(s) 288
AcuI CTGAAG 1 cut(s) 207
AcyI GRCGYC 1 cut(s) 870
AfaI GTAC 1 cut(s) 719
AflIII ACRYGT 1 cut(s) 601
AgsI TTSAA 6 cut(s) 23, 256, 416, 800, 806, 848
AhlI ACTAGT 1 cut(s) 367
Alw21I GWGCWC 2 cut(s) 567, 627
Alw26I GTCTC 2 cut(s) 168, 512
Ama87I CYCGRG 1 cut(s) 749
AoxI GGCC 5 cut(s) 3, 222, 231, 649, 963
ApeKI GCWGC 3 cut(s) 572, 977, 1034
ApoI RAATTY 1 cut(s) 288
Asp700I GAANNNNTTC 1 cut(s) 420
AspS9I GGNCC 2 cut(s) 4, 963
AsuHPI GGTGA 4 cut(s) 524, 548, 585, 931
AvaI CYCGRG 1 cut(s) 749
BalI TGGCCA 1 cut(s) 224
BanII GRGCYC 1 cut(s) 627
Bbv12I GWGCWC 2 cut(s) 567, 627
BbvI GCAGC 3 cut(s) 584, 964, 1021
BccI CCATC 1 cut(s) 1016
BcoDI GTCTC 2 cut(s) 168, 512
BcuI ACTAGT 1 cut(s) 367
BfaI CTAG 3 cut(s) 167, 368, 530
BfmI CTRYAG 1 cut(s) 522
BfuAI ACCTGC 1 cut(s) 650
BglI GCCNNNNNGGC 1 cut(s) 230
BisI GCNGC 3 cut(s) 573, 978, 1035
BlsI GCNGC 3 cut(s) 574, 979, 1036
BmeT110I CYCGRG 1 cut(s) 749
BmgT120I GGNCC 2 cut(s) 4, 963
BmiI GGNNCC 1 cut(s) 964
BmrI ACTGGG 1 cut(s) 83
BmsI GCATC 3 cut(s) 360, 529, 963
BmuI ACTGGG 1 cut(s) 83
Bpu10I CCTNAGC 1 cut(s) 1029
BpuEI CTTGAG 1 cut(s) 978
BsaHI GRCGYC 1 cut(s) 870
BsaJI CCNNGG 1 cut(s) 228
Bse1I ACTGG 2 cut(s) 89, 341
Bse3DI GCAATG 2 cut(s) 176, 306
BseDI CCNNGG 1 cut(s) 228
BseGI GGATG 4 cut(s) 34, 385, 862, 881
BseMI GCAATG 2 cut(s) 176, 306
BseMII CTCAG 2 cut(s) 115, 695
BseNI ACTGG 2 cut(s) 89, 341
BseRI GAGGAG 2 cut(s) 737, 798
BseXI GCAGC 3 cut(s) 584, 964, 1021
Bsh1236I CGCG 1 cut(s) 483
BshFI GGCC 5 cut(s) 5, 224, 233, 651, 965
BsiHKAI GWGCWC 2 cut(s) 567, 627
BsiHKCI CYCGRG 1 cut(s) 749
BsiSI CCGG 1 cut(s) 906
BslFI GGGAC 2 cut(s) 51, 60
BsmAI GTCTC 2 cut(s) 168, 512
BsmBI CGTCTC 1 cut(s) 168
BsmFI GGGAC 2 cut(s) 51, 60
BsnI GGCC 5 cut(s) 5, 224, 233, 651, 965
BsoBI CYCGRG 1 cut(s) 749
Bsp1286I GDGCHC 2 cut(s) 567, 627
Bsp143I GATC 2 cut(s) 104, 472
BspACI CCGC 2 cut(s) 324, 483
BspANI GGCC 5 cut(s) 5, 224, 233, 651, 965
BspCNI CTCAG 2 cut(s) 114, 696
BspFNI CGCG 1 cut(s) 483
BspLI GGNNCC 1 cut(s) 964
BspMAI CTGCAG 1 cut(s) 526
BspMI ACCTGC 1 cut(s) 650
BspQI GCTCTTC 3 cut(s) 48, 549, 999
BsrDI GCAATG 2 cut(s) 176, 306
BsrI ACTGG 2 cut(s) 89, 341
BssECI CCNNGG 1 cut(s) 228
BssMI GATC 2 cut(s) 104, 472
BssNI GRCGYC 1 cut(s) 870
BssT1I CCWWGG 1 cut(s) 228
Bst4CI ACNGT 1 cut(s) 683
Bst6I CTCTTC 4 cut(s) 48, 510, 549, 999
BstACI GRCGYC 1 cut(s) 870
BstC8I GCNNGC 3 cut(s) 183, 322, 1011
BstDEI CTNAG 4 cut(s) 101, 476, 704, 1029
BstF5I GGATG 4 cut(s) 34, 385, 862, 881
BstFNI CGCG 1 cut(s) 483
BstKTI GATC 2 cut(s) 107, 475
BstMAI GTCTC 2 cut(s) 168, 512
BstMBI GATC 2 cut(s) 104, 472
BstMWI GCNNNNNNNGC 7 cut(s) 11, 152, 230, 530, 539, 648, 1034
BstNSI RCATGY 1 cut(s) 146
BstSFI CTRYAG 1 cut(s) 522
BstUI CGCG 1 cut(s) 483
BstV1I GCAGC 3 cut(s) 584, 964, 1021
BstXI CCANNNNNNTGG 2 cut(s) 241, 418
BsuRI GGCC 5 cut(s) 5, 224, 233, 651, 965
BtgZI GCGATG 1 cut(s) 337
BtsCI GGATG 4 cut(s) 34, 385, 862, 881
BtsIMutI CAGTG 2 cut(s) 688, 701
BveI ACCTGC 1 cut(s) 650
Cac8I GCNNGC 3 cut(s) 183, 322, 1011
Cfr13I GGNCC 2 cut(s) 4, 963
CseI GACGC 2 cut(s) 326, 489
Csp6I GTAC 1 cut(s) 718
CviAII CATG 6 cut(s) 121, 143, 220, 430, 460, 725
CviQI GTAC 1 cut(s) 718
DdeI CTNAG 4 cut(s) 101, 476, 704, 1029
DpnI GATC 2 cut(s) 106, 474
DpnII GATC 2 cut(s) 104, 472
EaeI YGGCCR 1 cut(s) 222
Eam1104I CTCTTC 4 cut(s) 48, 510, 549, 999
EarI CTCTTC 4 cut(s) 48, 510, 549, 999
EciI GGCGGA 1 cut(s) 339
Ecl136II GAGCTC 1 cut(s) 625
Eco130I CCWWGG 1 cut(s) 228
Eco147I AGGCCT 1 cut(s) 651
Eco24I GRGCYC 1 cut(s) 627
Eco53kI GAGCTC 1 cut(s) 625
Eco57I CTGAAG 1 cut(s) 207
Eco88I CYCGRG 1 cut(s) 749
EcoICRI GAGCTC 1 cut(s) 625
EcoT14I CCWWGG 1 cut(s) 228
EcoT22I ATGCAT 1 cut(s) 353
EcoT38I GRGCYC 1 cut(s) 627
ErhI CCWWGG 1 cut(s) 228
Esp3I CGTCTC 1 cut(s) 168
FaeI CATG 6 cut(s) 124, 146, 223, 433, 463, 728
FaqI GGGAC 2 cut(s) 51, 60
FatI CATG 6 cut(s) 120, 142, 219, 429, 459, 724
Fnu4HI GCNGC 3 cut(s) 573, 978, 1035
FokI GGATG 4 cut(s) 21, 392, 868, 869
FriOI GRGCYC 1 cut(s) 627
Fsp4HI GCNGC 3 cut(s) 573, 978, 1035
FspBI CTAG 3 cut(s) 167, 368, 530
GluI GCNGC 3 cut(s) 573, 978, 1035
HaeIII GGCC 5 cut(s) 5, 224, 233, 651, 965
HapII CCGG 1 cut(s) 906
HgaI GACGC 2 cut(s) 326, 489
Hin1I GRCGYC 1 cut(s) 870
Hin1II CATG 6 cut(s) 124, 146, 223, 433, 463, 728
HinfI GANTC 5 cut(s) 19, 158, 383, 607, 744
HpaII CCGG 1 cut(s) 906
HphI GGTGA 4 cut(s) 524, 548, 585, 931
Hpy166II GTNNAC 3 cut(s) 244, 365, 673
Hpy188I TCNGA 3 cut(s) 104, 612, 886
Hpy188III TCNNGA 1 cut(s) 443
Hpy8I GTNNAC 3 cut(s) 244, 365, 673
Hpy99I CGWCG 1 cut(s) 473
HpyAV CCTTC 3 cut(s) 232, 461, 953
HpyCH4III ACNGT 1 cut(s) 683
HpyCH4IV ACGT 2 cut(s) 601, 870
HpyF10VI GCNNNNNNNGC 7 cut(s) 11, 152, 230, 530, 539, 648, 1034
HpyF3I CTNAG 4 cut(s) 101, 476, 704, 1029
HpySE526I ACGT 2 cut(s) 601, 870
Hsp92I GRCGYC 1 cut(s) 870
Hsp92II CATG 6 cut(s) 124, 146, 223, 433, 463, 728
Kzo9I GATC 2 cut(s) 104, 472
LguI GCTCTTC 3 cut(s) 48, 549, 999
LmnI GCTCC 3 cut(s) 622, 770, 1042
LpnPI CCDG 9 cut(s) 51, 102, 280, 306, 354, 519, 609, 645, 919
Lsp1109I GCAGC 3 cut(s) 584, 964, 1021
LweI GCATC 3 cut(s) 360, 529, 963
MaeI CTAG 3 cut(s) 167, 368, 530
MaeII ACGT 2 cut(s) 601, 870
MaeIII GTNAC 5 cut(s) 138, 432, 549, 697, 871
MalI GATC 2 cut(s) 106, 474
MboI GATC 2 cut(s) 104, 472
MboII GAAGA 6 cut(s) 35, 200, 527, 536, 899, 1016
MhlI GDGCHC 2 cut(s) 567, 627
MlsI TGGCCA 1 cut(s) 224
MluCI AATT 7 cut(s) 108, 114, 288, 795, 890, 983, 1057
MluNI TGGCCA 1 cut(s) 224
MlyI GAGTC 2 cut(s) 152, 738
MmeI TCCRAC 3 cut(s) 196, 352, 693
Mox20I TGGCCA 1 cut(s) 224
Mph1103I ATGCAT 1 cut(s) 353
MroXI GAANNNNTTC 1 cut(s) 420
MscI TGGCCA 1 cut(s) 224
MslI CAYNNNNRTG 1 cut(s) 416
Msp20I TGGCCA 1 cut(s) 224
MspA1I CMGCKG 1 cut(s) 635
MspI CCGG 1 cut(s) 906
MvnI CGCG 1 cut(s) 483
MwoI GCNNNNNNNGC 7 cut(s) 11, 152, 230, 530, 539, 648, 1034
NdeII GATC 2 cut(s) 104, 472
NlaIII CATG 6 cut(s) 124, 146, 223, 433, 463, 728
NlaIV GGNNCC 1 cut(s) 964
NmuCI GTSAC 3 cut(s) 432, 549, 871
NsiI ATGCAT 1 cut(s) 353
NspI RCATGY 1 cut(s) 146
PaeR7I CTCGAG 1 cut(s) 749
PceI AGGCCT 1 cut(s) 651
PciSI GCTCTTC 3 cut(s) 48, 549, 999
PcsI WCGNNNNNNNCGW 1 cut(s) 210
PdmI GAANNNNTTC 1 cut(s) 420
PfeI GAWTC 3 cut(s) 19, 383, 607
PkrI GCNGC 3 cut(s) 574, 979, 1036
PleI GAGTC 2 cut(s) 152, 738
PpsI GAGTC 2 cut(s) 152, 738
PsiI TTATAA 1 cut(s) 113
Psp124BI GAGCTC 1 cut(s) 627
PspN4I GGNNCC 1 cut(s) 964
PspPI GGNCC 2 cut(s) 4, 963
PspXI VCTCGAGB 1 cut(s) 749
PstI CTGCAG 1 cut(s) 526
PvuII CAGCTG 1 cut(s) 635
RsaI GTAC 1 cut(s) 719
RsaNI GTAC 1 cut(s) 718
RseI CAYNNNNRTG 1 cut(s) 416
SacI GAGCTC 1 cut(s) 627
SapI GCTCTTC 3 cut(s) 48, 549, 999
SatI GCNGC 3 cut(s) 573, 978, 1035
Sau3AI GATC 2 cut(s) 104, 472
Sau96I GGNCC 2 cut(s) 4, 963
SchI GAGTC 2 cut(s) 152, 738
SduI GDGCHC 2 cut(s) 567, 627
SfaNI GCATC 3 cut(s) 360, 529, 963
SfcI CTRYAG 1 cut(s) 522
SfiI GGCCNNNNNGGCC 1 cut(s) 230
Sfr274I CTCGAG 1 cut(s) 749
SlaI CTCGAG 1 cut(s) 749
SmiMI CAYNNNNRTG 1 cut(s) 416
SmlI CTYRAG 2 cut(s) 749, 993
SmoI CTYRAG 2 cut(s) 749, 993
SpeI ACTAGT 1 cut(s) 367
Sse9I AATT 7 cut(s) 108, 114, 288, 795, 890, 983, 1057
SseBI AGGCCT 1 cut(s) 651
SsiI CCGC 2 cut(s) 324, 483
SspMI CTAG 3 cut(s) 167, 368, 530
SstI GAGCTC 1 cut(s) 627
StuI AGGCCT 1 cut(s) 651
StyI CCWWGG 1 cut(s) 228
TaaI ACNGT 1 cut(s) 683
TaiI ACGT 2 cut(s) 604, 873
TaqI TCGA 3 cut(s) 204, 750, 957
TasI AATT 7 cut(s) 108, 114, 288, 795, 890, 983, 1057
TatI WGTACW 1 cut(s) 717
TfiI GAWTC 3 cut(s) 19, 383, 607
TscAI CASTG 2 cut(s) 688, 708
TseFI GTSAC 3 cut(s) 432, 549, 871
TseI GCWGC 3 cut(s) 572, 977, 1034
Tsp45I GTSAC 3 cut(s) 432, 549, 871
TspDTI ATGAA 8 cut(s) 45, 137, 207, 396, 413, 713, 719, 807
TspRI CASTG 2 cut(s) 688, 708
XapI RAATTY 1 cut(s) 288
XceI RCATGY 1 cut(s) 146
XhoI CTCGAG 1 cut(s) 749
XmnI GAANNNNTTC 1 cut(s) 420
XspI CTAG 3 cut(s) 167, 368, 530
ZraI GACGTC 1 cut(s) 871
Zsp2I ATGCAT 1 cut(s) 353
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.