Rh3CG340700

Belongs to the FPP GGPP synthase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0016407
Physical Location & Seq
Reverse (-)
38365312 .. 38366274
963 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG340700.1

Sequence Viewer

Length: 963 bp
ATGAAAAACAAGTCCTTGTTACATGCACAAGTAGCTGACTCGTCTCTAGTCCAACCATTGCTCGCCGAAGATGAAGCCCTATTCGAGTTTGACGAATACATGGCCACCAAGGCAAAGAAGGTGGACAAAGCATTGAATGAAGCTGTGCCTTTGCAATATCCCAAGAAAATTCACAGGGCAATGAGATATTCCCTATTAGCAGGCGGAAAGCGTGTGCGTCCAGTTTTATGCATCGCTTCGTGTGAACTAGTTGGAGGGGATGAATCTTTAGCAATCCCAACAGCTTGTGCCATTGAAATGGTTCATACCATGTCACTTATTCACGATGACCTTCCTTGCATGGACAACGACGATCTTAGACGCGGAAAACCCACGAACCACAAGGCTTTCGGTGAAGAGACTGCAGTTCTAGCTGGTGATGCTCTTCTGTCACTTGCCTTTGAGCACATAGCAGCCAAGACCACAAATGTTTCACCTAAACGTGTGATTCAGACCATTGTGGAGCTCGGTTCAGCTGTTGGCTCGTTAGGCCTTGTTGCAGGTCAAATGGTGGACATTCACAGTGAGGGCAAGGAAGTAACACTGAGAGAGTTGGAGTACATTCATGTTCATAAAACTGCAAAACTCCTCGAGGCTTCTGTTGTTTGTGGAGCAATAATTGGAGGAGGGAATGAAATTGAAGTTGAAAAGATGAGGAAGTATGCAAGGTGTATAGGGCTGTTGTTTCAGGTTGTGGATGATATTTTGGACGTCACAAAGTCATCGGAAGAATTGGGAAAGACAGCCGGAAAAGACTTGGTTAGTGATAAGGCGACATATCCCAAGCTCATTGGCATCGAAGGGGCCAAGAACTTTGCTGCCGAATTAGTGGCTCAAGCAATAGAAGAGCTTGCTTATTTTGATGGTGCTAAGGCTGCTCCACTATATTATTTAGCTAATTATATTGCAAAAAGGCAGACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00900 ko01100 ko01110 ko01130 map00900 map01100 map01110 map01130
Pfam Domains
Protein Families
polyprenyl_synt

Protein Analysis

320

Amino Acids

34.69

Weight (kDa)

5.77

Isoelectric Point (pI)

41.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
polyprenyl_synt PF00348 55 - 291 4.5e-59 Polyprenyl synthetase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016407)

Species Orthologous Gene IDs
malus_domestica MD09G1264500.v1.1 MD17G1260500.v1.1
prunus_persica Prupe.3G162100_v2.0.a1
pyrus_communis pycom09g17810 pycom17g26120
rosa_chinensis RchiOBHm_Chr3g0493061
rosa_laevigata RLG00000022731
rosa_multiflora Rmu_sc0003941.1_g000014
rosa_roxburghii Rroxscaffold_6G00391880
rosa_rugosa Rorug03G0258800
rosa_samantha Rh3AG307900 Rh3BG343300 Rh3CG340700 Rh3DG343100
rosa_wichuraiana Rw3G027080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 753
AbsI CCTCGAGG 1 cut(s) 629
Acc36I ACCTGC 1 cut(s) 530
AccII CGCG 1 cut(s) 363
AciI CCGC 2 cut(s) 204, 363
AcoI YGGCCR 1 cut(s) 102
AcsI RAATTY 1 cut(s) 168
AcyI GRCGYC 1 cut(s) 750
AfaI GTAC 1 cut(s) 599
AflIII ACRYGT 1 cut(s) 481
AgsI TTSAA 4 cut(s) 136, 296, 680, 686
AhlI ACTAGT 1 cut(s) 247
AluBI AGCT 9 cut(s) 35, 143, 284, 413, 505, 515, 826, 889, 935
AluI AGCT 9 cut(s) 35, 143, 284, 413, 505, 515, 826, 889, 935
Alw21I GWGCWC 2 cut(s) 447, 507
Alw26I GTCTC 2 cut(s) 48, 392
Ama87I CYCGRG 1 cut(s) 629
AoxI GGCC 3 cut(s) 102, 529, 843
ApeKI GCWGC 3 cut(s) 452, 857, 914
ApoI RAATTY 1 cut(s) 168
Asp700I GAANNNNTTC 1 cut(s) 300
AspS9I GGNCC 1 cut(s) 843
AsuHPI GGTGA 3 cut(s) 404, 428, 465
AvaI CYCGRG 1 cut(s) 629
BalI TGGCCA 1 cut(s) 104
BanII GRGCYC 1 cut(s) 507
Bbv12I GWGCWC 2 cut(s) 447, 507
BbvI GCAGC 3 cut(s) 464, 844, 901
BccI CCATC 1 cut(s) 896
BcoDI GTCTC 2 cut(s) 48, 392
BcuI ACTAGT 1 cut(s) 247
BfaI CTAG 3 cut(s) 47, 248, 410
BfmI CTRYAG 1 cut(s) 402
BfuAI ACCTGC 1 cut(s) 530
BglI GCCNNNNNGGC 1 cut(s) 110
BisI GCNGC 3 cut(s) 453, 858, 915
BlsI GCNGC 3 cut(s) 454, 859, 916
BmeT110I CYCGRG 1 cut(s) 629
BmgT120I GGNCC 1 cut(s) 843
BmiI GGNNCC 1 cut(s) 844
BmsI GCATC 3 cut(s) 240, 409, 843
Bpu10I CCTNAGC 1 cut(s) 909
BpuEI CTTGAG 1 cut(s) 858
BsaHI GRCGYC 1 cut(s) 750
BsaJI CCNNGG 1 cut(s) 108
Bse1I ACTGG 1 cut(s) 221
Bse3DI GCAATG 2 cut(s) 56, 186
BseDI CCNNGG 1 cut(s) 108
BseGI GGATG 2 cut(s) 265, 742
BseMI GCAATG 2 cut(s) 56, 186
BseMII CTCAG 1 cut(s) 575
BseNI ACTGG 1 cut(s) 221
BseRI GAGGAG 2 cut(s) 617, 678
BseXI GCAGC 3 cut(s) 464, 844, 901
Bsh1236I CGCG 1 cut(s) 363
BshFI GGCC 3 cut(s) 104, 531, 845
BsiHKAI GWGCWC 2 cut(s) 447, 507
BsiHKCI CYCGRG 1 cut(s) 629
BsiSI CCGG 1 cut(s) 786
BsmAI GTCTC 2 cut(s) 48, 392
BsmBI CGTCTC 1 cut(s) 48
BsnI GGCC 3 cut(s) 104, 531, 845
BsoBI CYCGRG 1 cut(s) 629
Bsp1286I GDGCHC 2 cut(s) 447, 507
Bsp143I GATC 1 cut(s) 352
BspACI CCGC 2 cut(s) 204, 363
BspANI GGCC 3 cut(s) 104, 531, 845
BspCNI CTCAG 1 cut(s) 576
BspFNI CGCG 1 cut(s) 363
BspLI GGNNCC 1 cut(s) 844
BspMAI CTGCAG 1 cut(s) 406
BspMI ACCTGC 1 cut(s) 530
BspQI GCTCTTC 2 cut(s) 429, 879
BsrDI GCAATG 2 cut(s) 56, 186
BsrI ACTGG 1 cut(s) 221
BssECI CCNNGG 1 cut(s) 108
BssMI GATC 1 cut(s) 352
BssNI GRCGYC 1 cut(s) 750
BssT1I CCWWGG 1 cut(s) 108
Bst4CI ACNGT 1 cut(s) 563
Bst6I CTCTTC 3 cut(s) 390, 429, 879
BstACI GRCGYC 1 cut(s) 750
BstC8I GCNNGC 3 cut(s) 63, 202, 891
BstDEI CTNAG 3 cut(s) 356, 584, 909
BstF5I GGATG 2 cut(s) 265, 742
BstFNI CGCG 1 cut(s) 363
BstKTI GATC 1 cut(s) 355
BstMAI GTCTC 2 cut(s) 48, 392
BstMBI GATC 1 cut(s) 352
BstMWI GCNNNNNNNGC 6 cut(s) 32, 110, 410, 419, 528, 914
BstNSI RCATGY 1 cut(s) 26
BstSFI CTRYAG 1 cut(s) 402
BstUI CGCG 1 cut(s) 363
BstV1I GCAGC 3 cut(s) 464, 844, 901
BstXI CCANNNNNNTGG 1 cut(s) 298
BsuRI GGCC 3 cut(s) 104, 531, 845
BtgZI GCGATG 1 cut(s) 217
BtsCI GGATG 2 cut(s) 265, 742
BtsIMutI CAGTG 2 cut(s) 568, 581
BveI ACCTGC 1 cut(s) 530
Cac8I GCNNGC 3 cut(s) 63, 202, 891
Cfr13I GGNCC 1 cut(s) 843
CseI GACGC 2 cut(s) 206, 369
Csp6I GTAC 1 cut(s) 598
CspCI CAANNNNNGTGG 2 cut(s) 102, 137
CviAII CATG 5 cut(s) 23, 100, 310, 340, 605
CviQI GTAC 1 cut(s) 598
DdeI CTNAG 3 cut(s) 356, 584, 909
DpnI GATC 1 cut(s) 354
DpnII GATC 1 cut(s) 352
EaeI YGGCCR 1 cut(s) 102
Eam1104I CTCTTC 3 cut(s) 390, 429, 879
EarI CTCTTC 3 cut(s) 390, 429, 879
EciI GGCGGA 1 cut(s) 219
Ecl136II GAGCTC 1 cut(s) 505
Eco130I CCWWGG 1 cut(s) 108
Eco147I AGGCCT 1 cut(s) 531
Eco24I GRGCYC 1 cut(s) 507
Eco53kI GAGCTC 1 cut(s) 505
Eco88I CYCGRG 1 cut(s) 629
EcoICRI GAGCTC 1 cut(s) 505
EcoT14I CCWWGG 1 cut(s) 108
EcoT22I ATGCAT 1 cut(s) 233
EcoT38I GRGCYC 1 cut(s) 507
ErhI CCWWGG 1 cut(s) 108
Esp3I CGTCTC 1 cut(s) 48
FaeI CATG 5 cut(s) 26, 103, 313, 343, 608
FatI CATG 5 cut(s) 22, 99, 309, 339, 604
Fnu4HI GCNGC 3 cut(s) 453, 858, 915
FokI GGATG 2 cut(s) 272, 749
FriOI GRGCYC 1 cut(s) 507
Fsp4HI GCNGC 3 cut(s) 453, 858, 915
FspBI CTAG 3 cut(s) 47, 248, 410
GluI GCNGC 3 cut(s) 453, 858, 915
HaeIII GGCC 3 cut(s) 104, 531, 845
HapII CCGG 1 cut(s) 786
HgaI GACGC 2 cut(s) 206, 369
Hin1I GRCGYC 1 cut(s) 750
Hin1II CATG 5 cut(s) 26, 103, 313, 343, 608
HinfI GANTC 3 cut(s) 38, 263, 487
HpaII CCGG 1 cut(s) 786
HphI GGTGA 3 cut(s) 404, 428, 465
Hpy166II GTNNAC 3 cut(s) 124, 245, 553
Hpy188I TCNGA 2 cut(s) 492, 766
Hpy188III TCNNGA 1 cut(s) 323
Hpy8I GTNNAC 3 cut(s) 124, 245, 553
Hpy99I CGWCG 1 cut(s) 353
HpyAV CCTTC 3 cut(s) 112, 341, 833
HpyCH4III ACNGT 1 cut(s) 563
HpyCH4IV ACGT 2 cut(s) 481, 750
HpyCH4V TGCA 9 cut(s) 26, 154, 231, 339, 404, 539, 620, 704, 947
HpyF10VI GCNNNNNNNGC 6 cut(s) 32, 110, 410, 419, 528, 914
HpyF3I CTNAG 3 cut(s) 356, 584, 909
HpySE526I ACGT 2 cut(s) 481, 750
Hsp92I GRCGYC 1 cut(s) 750
Hsp92II CATG 5 cut(s) 26, 103, 313, 343, 608
Kzo9I GATC 1 cut(s) 352
LguI GCTCTTC 2 cut(s) 429, 879
LmnI GCTCC 3 cut(s) 502, 650, 922
LpnPI CCDG 7 cut(s) 160, 186, 234, 399, 525, 713, 799
Lsp1109I GCAGC 3 cut(s) 464, 844, 901
LweI GCATC 3 cut(s) 240, 409, 843
MaeI CTAG 3 cut(s) 47, 248, 410
MaeII ACGT 2 cut(s) 481, 750
MaeIII GTNAC 5 cut(s) 18, 312, 429, 577, 751
MalI GATC 1 cut(s) 354
MboI GATC 1 cut(s) 352
MboII GAAGA 5 cut(s) 80, 407, 416, 779, 896
MhlI GDGCHC 2 cut(s) 447, 507
MlsI TGGCCA 1 cut(s) 104
MluCI AATT 6 cut(s) 168, 657, 675, 770, 863, 937
MluNI TGGCCA 1 cut(s) 104
MlyI GAGTC 1 cut(s) 32
MmeI TCCRAC 3 cut(s) 76, 232, 573
MnlI CCTC 7 cut(s) 248, 559, 625, 638, 656, 659, 687
Mox20I TGGCCA 1 cut(s) 104
Mph1103I ATGCAT 1 cut(s) 233
MroXI GAANNNNTTC 1 cut(s) 300
MscI TGGCCA 1 cut(s) 104
MslI CAYNNNNRTG 1 cut(s) 296
Msp20I TGGCCA 1 cut(s) 104
MspA1I CMGCKG 1 cut(s) 515
MspI CCGG 1 cut(s) 786
MvnI CGCG 1 cut(s) 363
MwoI GCNNNNNNNGC 6 cut(s) 32, 110, 410, 419, 528, 914
NdeII GATC 1 cut(s) 352
NlaIII CATG 5 cut(s) 26, 103, 313, 343, 608
NlaIV GGNNCC 1 cut(s) 844
NmuCI GTSAC 3 cut(s) 312, 429, 751
NsiI ATGCAT 1 cut(s) 233
NspI RCATGY 1 cut(s) 26
PaeR7I CTCGAG 1 cut(s) 629
PceI AGGCCT 1 cut(s) 531
PciSI GCTCTTC 2 cut(s) 429, 879
PcsI WCGNNNNNNNCGW 1 cut(s) 90
PdmI GAANNNNTTC 1 cut(s) 300
PfeI GAWTC 2 cut(s) 263, 487
PkrI GCNGC 3 cut(s) 454, 859, 916
PleI GAGTC 1 cut(s) 32
PpsI GAGTC 1 cut(s) 32
Psp124BI GAGCTC 1 cut(s) 507
PspN4I GGNNCC 1 cut(s) 844
PspPI GGNCC 1 cut(s) 843
PspXI VCTCGAGB 1 cut(s) 629
PstI CTGCAG 1 cut(s) 406
PvuII CAGCTG 1 cut(s) 515
RsaI GTAC 1 cut(s) 599
RsaNI GTAC 1 cut(s) 598
RseI CAYNNNNRTG 1 cut(s) 296
SacI GAGCTC 1 cut(s) 507
SapI GCTCTTC 2 cut(s) 429, 879
SatI GCNGC 3 cut(s) 453, 858, 915
Sau3AI GATC 1 cut(s) 352
Sau96I GGNCC 1 cut(s) 843
SchI GAGTC 1 cut(s) 32
SduI GDGCHC 2 cut(s) 447, 507
SfaNI GCATC 3 cut(s) 240, 409, 843
SfcI CTRYAG 1 cut(s) 402
Sfr274I CTCGAG 1 cut(s) 629
SlaI CTCGAG 1 cut(s) 629
SmiMI CAYNNNNRTG 1 cut(s) 296
SmlI CTYRAG 2 cut(s) 629, 873
SmoI CTYRAG 2 cut(s) 629, 873
SpeI ACTAGT 1 cut(s) 247
Sse9I AATT 6 cut(s) 168, 657, 675, 770, 863, 937
SseBI AGGCCT 1 cut(s) 531
SsiI CCGC 2 cut(s) 204, 363
SspMI CTAG 3 cut(s) 47, 248, 410
SstI GAGCTC 1 cut(s) 507
StuI AGGCCT 1 cut(s) 531
StyI CCWWGG 1 cut(s) 108
TaaI ACNGT 1 cut(s) 563
TaiI ACGT 2 cut(s) 484, 753
TaqI TCGA 3 cut(s) 84, 630, 837
TasI AATT 6 cut(s) 168, 657, 675, 770, 863, 937
TatI WGTACW 1 cut(s) 597
TfiI GAWTC 2 cut(s) 263, 487
TscAI CASTG 2 cut(s) 568, 588
TseFI GTSAC 3 cut(s) 312, 429, 751
TseI GCWGC 3 cut(s) 452, 857, 914
Tsp45I GTSAC 3 cut(s) 312, 429, 751
TspDTI ATGAA 8 cut(s) 17, 87, 153, 276, 293, 593, 599, 687
TspRI CASTG 2 cut(s) 568, 588
XapI RAATTY 1 cut(s) 168
XceI RCATGY 1 cut(s) 26
XhoI CTCGAG 1 cut(s) 629
XmnI GAANNNNTTC 1 cut(s) 300
XspI CTAG 3 cut(s) 47, 248, 410
ZraI GACGTC 1 cut(s) 751
Zsp2I ATGCAT 1 cut(s) 233
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.