pycom17g26120

Belongs to the FPP GGPP synthase family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
Physical Location & Seq
Forward (+)
24434410 .. 24436466
2057 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom17g26120.3

Sequence Viewer

Length: 1488 bp
ATGAGTTTCAGTTTATCGTTTCTTAATCAATTAAGTGGTAGCGAACCCATATTTTTGAGAGTTTTTTTTTTAAATAAAAAACCGAAAAATGAATACTCAACTGGAATAAATCATTCCGAGCACATCAAAAGGATAATATTAAGTTATAGAAACCCATCTTGCTACATCGATCTCAATAAAATTAATAACAATAACAATAAACAAATAAATAAAATGAAGTTTCCTGATTATGTTAACCAATGCCTCAGATCCAACCAAACCTTCAGTTCTCCACACCAAAGTATGGCTCTTTTTGCAGCCATCCTCCGAAGCTACAGAAGTCCAGCACTTCTCAGAAACCCCATCATTGGCCTCATGAAGTTTCATTCAACCGTTACAAAACTTACCGGTCACTCTAGCGTGTTCGAATTTGACGAATACAAGGCGGCGAAGGCGAAGATGGTGGACGAAGCGTTGAATGCGGCGGTGCAGGTGCAACATCCCGAAATAATCCATAAGGCAATGAGGTACTCGCTTTTGGGTGGCGGCAAGCGTGTACTCCCAGTTTTATGCATTGCTTCATGTGAACTGGTTGGAGGGGATGAGTCTCTTGCCCTTCCAACAGCTTGTGCTTTCGAAATGATTCACGCCTGCTCACTTATCCAGGATGATCTCCCCTGCATGGATAATGCCGATCTTCGACGCGGAAGACCAACGAACCACAAGGTTTTTGGTGAAGATGCTGCGGTTTTAGCCGGTGATGCGCTTCTAGCCCTTGCCTTTGAACACATTGCGGCTAAGACAACAAAAGCAGTCTCGCCGGAGTGTGTGGTTCGAGTCATTGCAGAGATTGGTTCGGCAGTTGGGTCATTAGGCGTCGTGGCGGGTCAAATGGTGGACAGTCAAAGCGAAGGTAAAGAAGTGACGCTGCGAGAACTGGAGTACATTCATGCGCATAAAACCGCAAAGCTCTTTGAGGCTACGGCAGTTTGTGGAGCACTAATGGGAGGAGGGAACGACATTGAGATAGAAAGGTTAAGGAAGTATGCTGGTTCCATAGGCCTGTTGTATCAAGTGGTGGATGACATTTTGGATGTCACGAAATCGTCGGAGGAATTGGGCAAGACAGCAGGGAAGGACTTGGTAAGCGATAAGGCAACATATCCCAAGCTGATGGGGATTGAAGGGGCAAAGGATTTTGCTGCCGAGTTGGAGACTCAAGCATTGGAAGAGCTTGCTCATTTCGATGCTCCAAGAGACAGAGGTAGAGGAACAATATTGAACACTGTAATTCTGTTCGTTATTATTCGGGTGCACAAAAACCCAACCAAGCAGCGTTCATTTGCATGTTGCTTATCGTCTTGTGTTGAAAACTGTTGGAAACTGTTGCTTAGGCGATTTTATGTAACTATATTCTCACCTTCTGTACTCGAGCTATGCAAGATCGCTCACGTTGCTTCAGCCTCAACGTACTATTATATTATCTCGCTGAGCTTCGGTAGCAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

496

Amino Acids

54.52

Weight (kDa)

8.41

Isoelectric Point (pI)

52.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0016407)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 460
Acc16I TGCGCA 1 cut(s) 933
Acc36I ACCTGC 1 cut(s) 460
AccB7I CCANNNNNTGG 1 cut(s) 283
AccII CGCG 1 cut(s) 684
AciI CCGC 9 cut(s) 425, 461, 464, 525, 684, 725, 773, 863, 942
AclWI GGATC 1 cut(s) 243
AcsI RAATTY 1 cut(s) 407
AcuI CTGAAG 2 cut(s) 247, 1422
AcyI GRCGYC 1 cut(s) 855
AfaI GTAC 5 cut(s) 509, 537, 923, 1407, 1451
AfiI CCNNNNNNNGG 3 cut(s) 283, 347, 661
AgeI ACCGGT 1 cut(s) 386
AgsI TTSAA 6 cut(s) 369, 457, 764, 1163, 1261, 1349
AjnI CCWGG 1 cut(s) 642
AjuI GAANNNNNNNTTGG 2 cut(s) 245, 277
AluBI AGCT 7 cut(s) 312, 605, 949, 1150, 1213, 1414, 1473
AluI AGCT 7 cut(s) 312, 605, 949, 1150, 1213, 1414, 1473
Alw21I GWGCWC 3 cut(s) 123, 979, 1296
Alw26I GTCTC 4 cut(s) 591, 799, 1187, 1230
Alw44I GTGCAC 1 cut(s) 1292
AlwI GGATC 1 cut(s) 243
Ama87I CYCGRG 1 cut(s) 1409
AoxI GGCC 2 cut(s) 349, 1039
ApaLI GTGCAC 1 cut(s) 1292
ApeKI GCWGC 5 cut(s) 296, 722, 907, 1181, 1312
ApoI RAATTY 1 cut(s) 407
AseI ATTAAT 1 cut(s) 183
AsiGI ACCGGT 1 cut(s) 386
Asp700I GAANNNNTTC 1 cut(s) 621
AspLEI GCGC 2 cut(s) 745, 934
AsuHPI GGTGA 3 cut(s) 725, 749, 1389
AsuII TTCGAA 2 cut(s) 405, 615
AvaI CYCGRG 1 cut(s) 1409
BaeGI GKGCMC 1 cut(s) 1296
BbsI GAAGAC 1 cut(s) 694
Bbv12I GWGCWC 3 cut(s) 123, 979, 1296
BbvI GCAGC 5 cut(s) 308, 709, 894, 1168, 1324
BccI CCATC 5 cut(s) 163, 308, 350, 433, 1147
BceAI ACGGC 1 cut(s) 978
BciT130I CCWGG 1 cut(s) 644
BcoDI GTCTC 4 cut(s) 591, 799, 1187, 1230
BfaI CTAG 2 cut(s) 396, 749
BfmI CTRYAG 1 cut(s) 313
BfuAI ACCTGC 1 cut(s) 460
BisI GCNGC 9 cut(s) 297, 426, 462, 526, 723, 774, 908, 1182, 1313
BlpI GCTNAGC 1 cut(s) 1469
BlsI GCNGC 9 cut(s) 298, 427, 463, 527, 724, 775, 909, 1183, 1314
Bme1390I CCNGG 1 cut(s) 644
BmeT110I CYCGRG 1 cut(s) 1409
BmiI GGNNCC 1 cut(s) 1033
BmrFI CCNGG 1 cut(s) 644
BmrI ACTGGG 1 cut(s) 536
BmsI GCATC 3 cut(s) 709, 730, 1216
BmuI ACTGGG 1 cut(s) 536
BpiI GAAGAC 1 cut(s) 694
BpmI CTGGAG 1 cut(s) 938
Bpu10I CCTNAGC 1 cut(s) 1370
Bpu1102I GCTNAGC 1 cut(s) 1469
Bpu14I TTCGAA 2 cut(s) 405, 615
BpuEI CTTGAG 1 cut(s) 1182
Bsa29I ATCGAT 1 cut(s) 168
BsaHI GRCGYC 1 cut(s) 855
BsaWI WCCGGW 1 cut(s) 386
Bsc4I CCNNNNNNNGG 3 cut(s) 283, 347, 661
Bse118I RCCGGY 2 cut(s) 386, 734
Bse1I ACTGG 4 cut(s) 106, 542, 573, 921
Bse3DI GCAATG 4 cut(s) 507, 552, 768, 819
BseBI CCWGG 1 cut(s) 644
BseCI ATCGAT 1 cut(s) 168
BseGI GGATG 6 cut(s) 300, 478, 586, 652, 1066, 1078
BseLI CCNNNNNNNGG 3 cut(s) 283, 347, 661
BseMI GCAATG 4 cut(s) 507, 552, 768, 819
BseMII CTCAG 3 cut(s) 259, 346, 1460
BseNI ACTGG 4 cut(s) 106, 542, 573, 921
BseRI GAGGAG 1 cut(s) 1002
BseSI GKGCMC 1 cut(s) 1296
BseXI GCAGC 5 cut(s) 308, 709, 894, 1168, 1324
BsgI GTGCAG 1 cut(s) 488
Bsh1236I CGCG 1 cut(s) 684
BshFI GGCC 2 cut(s) 351, 1041
BshTI ACCGGT 1 cut(s) 386
BshVI ATCGAT 1 cut(s) 168
BsiHKAI GWGCWC 3 cut(s) 123, 979, 1296
BsiHKCI CYCGRG 1 cut(s) 1409
BsiSI CCGG 3 cut(s) 387, 735, 800
BslI CCNNNNNNNGG 3 cut(s) 283, 347, 661
BsmAI GTCTC 4 cut(s) 591, 799, 1187, 1230
BsmI GAATGC 1 cut(s) 463
BsnI GGCC 2 cut(s) 351, 1041
BsoBI CYCGRG 1 cut(s) 1409
Bsp119I TTCGAA 2 cut(s) 405, 615
Bsp1286I GDGCHC 3 cut(s) 123, 979, 1296
Bsp143I GATC 5 cut(s) 169, 248, 649, 673, 1422
Bsp1720I GCTNAGC 1 cut(s) 1469
BspACI CCGC 9 cut(s) 425, 461, 464, 525, 684, 725, 773, 863, 942
BspANI GGCC 2 cut(s) 351, 1041
BspCNI CTCAG 3 cut(s) 258, 345, 1461
BspDI ATCGAT 1 cut(s) 168
BspFNI CGCG 1 cut(s) 684
BspHI TCATGA 1 cut(s) 354
BspLI GGNNCC 1 cut(s) 1033
BspMI ACCTGC 1 cut(s) 460
BspPI GGATC 1 cut(s) 243
BspQI GCTCTTC 1 cut(s) 1203
BspT104I TTCGAA 2 cut(s) 405, 615
BsrDI GCAATG 4 cut(s) 507, 552, 768, 819
BsrFI RCCGGY 2 cut(s) 386, 734
BsrI ACTGG 4 cut(s) 106, 542, 573, 921
BssAI RCCGGY 2 cut(s) 386, 734
BssMI GATC 5 cut(s) 169, 248, 649, 673, 1422
BssNI GRCGYC 1 cut(s) 855
Bst2UI CCWGG 1 cut(s) 644
Bst4CI ACNGT 5 cut(s) 373, 881, 1267, 1355, 1365
Bst6I CTCTTC 1 cut(s) 1203
BstACI GRCGYC 1 cut(s) 855
BstBI TTCGAA 2 cut(s) 405, 615
BstC8I GCNNGC 3 cut(s) 530, 631, 1215
BstDEI CTNAG 5 cut(s) 245, 332, 777, 1370, 1469
BstF5I GGATG 6 cut(s) 300, 478, 586, 652, 1066, 1078
BstFNI CGCG 1 cut(s) 684
BstHHI GCGC 2 cut(s) 745, 934
BstKTI GATC 5 cut(s) 172, 251, 652, 676, 1425
BstMAI GTCTC 4 cut(s) 591, 799, 1187, 1230
BstMBI GATC 5 cut(s) 169, 248, 649, 673, 1422
BstMWI GCNNNNNNNGC 8 cut(s) 293, 431, 458, 731, 740, 749, 1433, 1479
BstNI CCWGG 1 cut(s) 644
BstNSI RCATGY 1 cut(s) 1329
BstSCI CCNGG 1 cut(s) 642
BstSFI CTRYAG 1 cut(s) 313
BstSLI GKGCMC 1 cut(s) 1296
BstUI CGCG 1 cut(s) 684
BstV1I GCAGC 5 cut(s) 308, 709, 894, 1168, 1324
BstV2I GAAGAC 1 cut(s) 694
BstX2I RGATCY 1 cut(s) 248
BstXI CCANNNNNNTGG 1 cut(s) 1153
BstYI RGATCY 1 cut(s) 248
Bsu15I ATCGAT 1 cut(s) 168
BsuRI GGCC 2 cut(s) 351, 1041
BsuTUI ATCGAT 1 cut(s) 168
BtsCI GGATG 6 cut(s) 300, 478, 586, 652, 1066, 1078
BtsIMutI CAGTG 1 cut(s) 1263
BveI ACCTGC 1 cut(s) 460
Cac8I GCNNGC 3 cut(s) 530, 631, 1215
CciI TCATGA 1 cut(s) 354
CfoI GCGC 2 cut(s) 745, 934
Cfr10I RCCGGY 2 cut(s) 386, 734
ClaI ATCGAT 1 cut(s) 168
CseI GACGC 3 cut(s) 690, 844, 913
Csp6I GTAC 5 cut(s) 508, 536, 922, 1406, 1450
CspAI ACCGGT 1 cut(s) 386
CviAII CATG 5 cut(s) 355, 561, 661, 929, 1326
CviQI GTAC 5 cut(s) 508, 536, 922, 1406, 1450
DdeI CTNAG 5 cut(s) 245, 332, 777, 1370, 1469
DpnI GATC 5 cut(s) 171, 250, 651, 675, 1424
DpnII GATC 5 cut(s) 169, 248, 649, 673, 1422
DraI TTTAAA 1 cut(s) 72
Eam1104I CTCTTC 1 cut(s) 1203
EarI CTCTTC 1 cut(s) 1203
Eco147I AGGCCT 1 cut(s) 1041
Eco57I CTGAAG 2 cut(s) 247, 1422
Eco88I CYCGRG 1 cut(s) 1409
EcoRII CCWGG 1 cut(s) 642
EcoT22I ATGCAT 1 cut(s) 554
FaeI CATG 5 cut(s) 358, 564, 664, 932, 1329
FatI CATG 5 cut(s) 354, 560, 660, 928, 1325
FauI CCCGC 1 cut(s) 856
Fnu4HI GCNGC 9 cut(s) 297, 426, 462, 526, 723, 774, 908, 1182, 1313
FokI GGATG 6 cut(s) 287, 465, 593, 659, 1073, 1085
Fsp4HI GCNGC 9 cut(s) 297, 426, 462, 526, 723, 774, 908, 1182, 1313
FspAI RTGCGCAY 1 cut(s) 933
FspBI CTAG 2 cut(s) 396, 749
FspI TGCGCA 1 cut(s) 933
GlaI GCGC 2 cut(s) 744, 933
GluI GCNGC 9 cut(s) 297, 426, 462, 526, 723, 774, 908, 1182, 1313
GsuI CTGGAG 1 cut(s) 938
HaeIII GGCC 2 cut(s) 351, 1041
HapII CCGG 3 cut(s) 387, 735, 800
HgaI GACGC 3 cut(s) 690, 844, 913
HhaI GCGC 2 cut(s) 745, 934
Hin1I GRCGYC 1 cut(s) 855
Hin1II CATG 5 cut(s) 358, 564, 664, 932, 1329
Hin6I GCGC 2 cut(s) 743, 932
HinP1I GCGC 2 cut(s) 743, 932
HincII GTYRAC 1 cut(s) 235
HindII GTYRAC 1 cut(s) 235
HinfI GANTC 4 cut(s) 584, 622, 816, 1195
HpaI GTTAAC 1 cut(s) 235
HpaII CCGG 3 cut(s) 387, 735, 800
HphI GGTGA 3 cut(s) 725, 749, 1389
Hpy166II GTNNAC 6 cut(s) 235, 445, 536, 566, 877, 1294
Hpy188I TCNGA 5 cut(s) 118, 248, 308, 335, 1090
Hpy188III TCNNGA 4 cut(s) 224, 355, 482, 1078
Hpy8I GTNNAC 6 cut(s) 235, 445, 536, 566, 877, 1294
Hpy99I CGWCG 3 cut(s) 684, 860, 1090
HpyAV CCTTC 7 cut(s) 271, 424, 605, 884, 1108, 1157, 1410
HpyCH4III ACNGT 5 cut(s) 373, 881, 1267, 1355, 1365
HpyCH4IV ACGT 2 cut(s) 1431, 1448
HpyCH4V TGCA 9 cut(s) 296, 469, 475, 552, 660, 824, 1294, 1325, 1419
HpyF10VI GCNNNNNNNGC 8 cut(s) 293, 431, 458, 731, 740, 749, 1433, 1479
HpyF3I CTNAG 5 cut(s) 245, 332, 777, 1370, 1469
HpySE526I ACGT 2 cut(s) 1431, 1448
Hsp92I GRCGYC 1 cut(s) 855
Hsp92II CATG 5 cut(s) 358, 564, 664, 932, 1329
HspAI GCGC 2 cut(s) 743, 932
KspAI GTTAAC 1 cut(s) 235
Kzo9I GATC 5 cut(s) 169, 248, 649, 673, 1422
LguI GCTCTTC 1 cut(s) 1203
LmnI GCTCC 2 cut(s) 974, 1234
Lsp1109I GCAGC 5 cut(s) 308, 709, 894, 1168, 1324
LweI GCATC 3 cut(s) 709, 730, 1216
MaeI CTAG 2 cut(s) 396, 749
MaeII ACGT 2 cut(s) 1431, 1448
MaeIII GTNAC 5 cut(s) 373, 389, 901, 1075, 1384
MalI GATC 5 cut(s) 171, 250, 651, 675, 1424
MboI GATC 5 cut(s) 169, 248, 649, 673, 1422
MboII GAAGA 5 cut(s) 448, 668, 699, 728, 1220
MflI RGATCY 1 cut(s) 248
MhlI GDGCHC 3 cut(s) 123, 979, 1296
MluCI AATT 5 cut(s) 29, 180, 407, 1094, 1269
MlyI GAGTC 3 cut(s) 593, 825, 1189
MmeI TCCRAC 6 cut(s) 276, 553, 623, 1068, 1170, 1337
Mph1103I ATGCAT 1 cut(s) 554
MroXI GAANNNNTTC 1 cut(s) 621
MseI TTAA 7 cut(s) 24, 32, 71, 140, 183, 234, 1016
MslI CAYNNNNRTG 2 cut(s) 1224, 1324
MspI CCGG 3 cut(s) 387, 735, 800
MspR9I CCNGG 1 cut(s) 644
Mva1269I GAATGC 1 cut(s) 463
MvaI CCWGG 1 cut(s) 644
MvnI CGCG 1 cut(s) 684
MwoI GCNNNNNNNGC 8 cut(s) 293, 431, 458, 731, 740, 749, 1433, 1479
NdeII GATC 5 cut(s) 169, 248, 649, 673, 1422
NlaIII CATG 5 cut(s) 358, 564, 664, 932, 1329
NlaIV GGNNCC 1 cut(s) 1033
NmeAIII GCCGAG 1 cut(s) 1210
NmuCI GTSAC 3 cut(s) 389, 901, 1075
NsbI TGCGCA 1 cut(s) 933
NsiI ATGCAT 1 cut(s) 554
NspI RCATGY 1 cut(s) 1329
NspV TTCGAA 2 cut(s) 405, 615
PaeR7I CTCGAG 1 cut(s) 1409
PagI TCATGA 1 cut(s) 354
PaqCI CACCTGC 1 cut(s) 460
PceI AGGCCT 1 cut(s) 1041
PciSI GCTCTTC 1 cut(s) 1203
PcsI WCGNNNNNNNCGW 1 cut(s) 411
PctI GAATGC 1 cut(s) 463
PdmI GAANNNNTTC 1 cut(s) 621
PfeI GAWTC 1 cut(s) 622
PflMI CCANNNNNTGG 1 cut(s) 283
PfoI TCCNGGA 1 cut(s) 642
PinAI ACCGGT 1 cut(s) 386
PkrI GCNGC 9 cut(s) 298, 427, 463, 527, 724, 775, 909, 1183, 1314
PleI GAGTC 3 cut(s) 592, 824, 1189
PpsI GAGTC 3 cut(s) 592, 824, 1189
PshBI ATTAAT 1 cut(s) 183
Psp6I CCWGG 1 cut(s) 642
PspGI CCWGG 1 cut(s) 642
PspN4I GGNNCC 1 cut(s) 1033
PspXI VCTCGAGB 1 cut(s) 1409
PsuI RGATCY 1 cut(s) 248
RsaI GTAC 5 cut(s) 509, 537, 923, 1407, 1451
RsaNI GTAC 5 cut(s) 508, 536, 922, 1406, 1450
RseI CAYNNNNRTG 2 cut(s) 1224, 1324
SapI GCTCTTC 1 cut(s) 1203
SaqAI TTAA 7 cut(s) 24, 32, 71, 140, 183, 234, 1016
SatI GCNGC 9 cut(s) 297, 426, 462, 526, 723, 774, 908, 1182, 1313
Sau3AI GATC 5 cut(s) 169, 248, 649, 673, 1422
SchI GAGTC 3 cut(s) 593, 825, 1189
ScrFI CCNGG 1 cut(s) 644
SduI GDGCHC 3 cut(s) 123, 979, 1296
SfaNI GCATC 3 cut(s) 709, 730, 1216
SfcI CTRYAG 1 cut(s) 313
Sfr274I CTCGAG 1 cut(s) 1409
SfuI TTCGAA 2 cut(s) 405, 615
SlaI CTCGAG 1 cut(s) 1409
SmiMI CAYNNNNRTG 2 cut(s) 1224, 1324
SmlI CTYRAG 2 cut(s) 1197, 1409
SmoI CTYRAG 2 cut(s) 1197, 1409
Sse9I AATT 5 cut(s) 29, 180, 407, 1094, 1269
SseBI AGGCCT 1 cut(s) 1041
SsiI CCGC 9 cut(s) 425, 461, 464, 525, 684, 725, 773, 863, 942
SspI AATATT 2 cut(s) 138, 1257
SspMI CTAG 2 cut(s) 396, 749
StuI AGGCCT 1 cut(s) 1041
StyD4I CCNGG 1 cut(s) 642
TaaI ACNGT 5 cut(s) 373, 881, 1267, 1355, 1365
TaiI ACGT 2 cut(s) 1434, 1451
TaqI TCGA 7 cut(s) 168, 405, 615, 679, 814, 1224, 1410
TasI AATT 5 cut(s) 29, 180, 407, 1094, 1269
TatI WGTACW 3 cut(s) 535, 921, 1405
TauI GCSGC 4 cut(s) 428, 464, 528, 776
TfiI GAWTC 1 cut(s) 622
Tru1I TTAA 7 cut(s) 24, 32, 71, 140, 183, 234, 1016
Tru9I TTAA 7 cut(s) 24, 32, 71, 140, 183, 234, 1016
TscAI CASTG 1 cut(s) 1270
TseFI GTSAC 3 cut(s) 389, 901, 1075
TseI GCWGC 5 cut(s) 296, 722, 907, 1181, 1312
Tsp45I GTSAC 3 cut(s) 389, 901, 1075
TspDTI ATGAA 7 cut(s) 105, 230, 353, 371, 549, 917, 1308
TspRI CASTG 1 cut(s) 1270
Van91I CCANNNNNTGG 1 cut(s) 283
VneI GTGCAC 1 cut(s) 1292
VspI ATTAAT 1 cut(s) 183
XapI RAATTY 1 cut(s) 407
XceI RCATGY 1 cut(s) 1329
XcmI CCANNNNNNNNNTGG 1 cut(s) 707
XhoI CTCGAG 1 cut(s) 1409
XmnI GAANNNNTTC 1 cut(s) 621
XspI CTAG 2 cut(s) 396, 749
Zsp2I ATGCAT 1 cut(s) 554
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.