pycom09g17810

Belongs to the FPP GGPP synthase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0016407
Physical Location & Seq
Forward (+)
18313369 .. 18314535
1167 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g17810.1

Sequence Viewer

Length: 1167 bp
ATGCATTCACCCAAAAATTTGATACCAACAAGCAAGGAATTTATGGCTTCTTTTGCAACCATCCTAGGCTATGAAACTCCATCCCTTCTCAAAACCGCTGCTAATTTTGGTCGTCTCAACGAAATTCCGAATGGCAGCACTAGAACCTCATCAACTCCTCTCATTCGCATGAAGATAAGGGCCACAGCTACACAAGTTACTGACTCATCATCTGCATTCCAACCATTGCTCGTCAATGGAGAACCAATCGCCACACCACTCAAAACCACGCAGTTTCCGGTGTTCAAATTCGATGAGTACATGTCAACGAAGGCAAACATGGTGGACAAGGCGTTGAACGAGGCCGTACCCGTGCAGTACCCCAAGAAAATCCATAGGGCAATGAGGTACTCGCTTTTGGCTGGCGGAAAGCGCGTCCGGCCGGTTTTGTGTCTCGCTTCATGTGAATTAGTTGGAGGGGATGAGTCACTTGCAATCCCAGCAGCTTGTGCCGTTGAAATGATCCACACCATGTCGCTTATTCACGATGATCTCCCTTGCATGGACAACGACGATCTTCGTCGCGGGAAGCCTACCAACCACAAGGCTTTTGGGGAGGAAACCGCAGTTCTAGCCGGTGATGCGCTTCTTTCCCTTGCTTTTGAACATATAGCGGCCAAGACAACAAAAGTAGTATCGCCGGAGCGTGTGGTTCGAGCCATCACTGAGCTTGGTTCGGCCGTCGGATCATTAGGCCTCGTGGCGGGTCAAATGGTGGACATTCAAAGCGAAGGCAAAGAAGTGACGCTGCGAGAACTCGAGTACATTCACGTGCATAAGACCGCGAAGCTCCTCGAGGCATCGGTGGTTTGCGGGGCAATCATCGGAGGAGCAGGTGAAGGGGAGGTGGAGAGGATGAGGAAGTATGCAAGGTGTATAGGGTTGTTGTTTCAAGTGGTGGACGACATTTTGGACGTGACGAAATCATCAGAGGAATTGGGGAAGACAGCGGGGAAAGATTTGGCAAGCGATAAGGCGACATATCCAAAGCTGATGGGGATTGAAGGGGCAAAGAATTTTGCTGCCGAGTTGGTGGCGCAAGCAGTGCAAGAGCTTGCTCATTTCGATGCTACTAGGGCGGCTCCATTGTATTATTTAGCCAATTATATTGCCAATAGACAGACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00900 ko01100 ko01110 ko01130 map00900 map01100 map01110 map01130
Pfam Domains
Protein Families
polyprenyl_synt

Protein Analysis

389

Amino Acids

41.91

Weight (kDa)

6.77

Isoelectric Point (pI)

34.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
polyprenyl_synt PF00348 122 - 357 3.5e-60 Polyprenyl synthetase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016407)

Species Orthologous Gene IDs
malus_domestica MD09G1264500.v1.1 MD17G1260500.v1.1
prunus_persica Prupe.3G162100_v2.0.a1
pyrus_communis pycom09g17810 pycom17g26120
rosa_chinensis RchiOBHm_Chr3g0493061
rosa_laevigata RLG00000022731
rosa_multiflora Rmu_sc0003941.1_g000014
rosa_roxburghii Rroxscaffold_6G00391880
rosa_rugosa Rorug03G0258800
rosa_samantha Rh3AG307900 Rh3BG343300 Rh3CG340700 Rh3DG343100
rosa_wichuraiana Rw3G027080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 863
AbsI CCTCGAGG 1 cut(s) 833
Acc36I ACCTGC 1 cut(s) 863
AccII CGCG 3 cut(s) 414, 564, 824
AclWI GGATC 2 cut(s) 496, 733
AcoI YGGCCR 3 cut(s) 419, 654, 717
AcsI RAATTY 5 cut(s) 16, 38, 123, 287, 1054
AcvI CACGTG 1 cut(s) 811
AfaI GTAC 5 cut(s) 299, 348, 359, 389, 803
AfiI CCNNNNNNNGG 2 cut(s) 541, 742
AflIII ACRYGT 1 cut(s) 300
AgsI TTSAA 7 cut(s) 286, 337, 497, 644, 764, 932, 1043
AjiI CACGTC 1 cut(s) 955
AluBI AGCT 6 cut(s) 188, 485, 709, 829, 1030, 1093
AluI AGCT 6 cut(s) 188, 485, 709, 829, 1030, 1093
Alw26I GTCTC 2 cut(s) 119, 437
AlwI GGATC 2 cut(s) 496, 733
Ama87I CYCGRG 2 cut(s) 797, 833
AoxI GGCC 6 cut(s) 180, 342, 419, 654, 717, 733
ApeKI GCWGC 5 cut(s) 98, 135, 482, 787, 1061
ApoI RAATTY 5 cut(s) 16, 38, 123, 287, 1054
AspA2I CCTAGG 1 cut(s) 64
AspLEI GCGC 3 cut(s) 414, 625, 1078
AspS9I GGNCC 1 cut(s) 180
AsuHPI GGTGA 2 cut(s) 629, 887
AvaI CYCGRG 2 cut(s) 797, 833
AvrII CCTAGG 1 cut(s) 64
BauI CACGAG 1 cut(s) 737
BbrPI CACGTG 1 cut(s) 811
BbsI GAAGAC 1 cut(s) 989
BbvI GCAGC 5 cut(s) 85, 147, 494, 774, 1048
BccI CCATC 4 cut(s) 68, 88, 707, 1027
BceAI ACGGC 3 cut(s) 329, 476, 704
BcoDI GTCTC 2 cut(s) 119, 437
BfaI CTAG 4 cut(s) 65, 141, 611, 1113
BfuAI ACCTGC 1 cut(s) 863
BisI GCNGC 7 cut(s) 99, 136, 483, 654, 788, 1062, 1119
BlnI CCTAGG 1 cut(s) 64
BlsI GCNGC 7 cut(s) 100, 137, 484, 655, 789, 1063, 1120
BmeT110I CYCGRG 2 cut(s) 797, 833
BmgBI CACGTC 1 cut(s) 955
BmgT120I GGNCC 1 cut(s) 180
BmiI GGNNCC 1 cut(s) 1122
BmsI GCATC 3 cut(s) 610, 848, 1096
BpiI GAAGAC 1 cut(s) 989
BsaAI YACGTR 1 cut(s) 811
BsaJI CCNNGG 1 cut(s) 64
BsaWI WCCGGW 1 cut(s) 277
Bsc4I CCNNNNNNNGG 2 cut(s) 541, 742
Bse118I RCCGGY 2 cut(s) 421, 614
Bse3DI GCAATG 2 cut(s) 224, 387
BseDI CCNNGG 1 cut(s) 64
BseGI GGATG 4 cut(s) 60, 80, 466, 900
BseLI CCNNNNNNNGG 2 cut(s) 541, 742
BseMI GCAATG 2 cut(s) 224, 387
BseMII CTCAG 1 cut(s) 696
BseRI GAGGAG 3 cut(s) 147, 821, 882
BseX3I CGGCCG 2 cut(s) 419, 717
BseXI GCAGC 5 cut(s) 85, 147, 494, 774, 1048
BseYI CCCAGC 1 cut(s) 478
BsgI GTGCAG 1 cut(s) 374
Bsh1236I CGCG 3 cut(s) 414, 564, 824
Bsh1285I CGRYCG 2 cut(s) 422, 720
BshFI GGCC 6 cut(s) 182, 344, 421, 656, 719, 735
BsiEI CGRYCG 2 cut(s) 422, 720
BsiHKCI CYCGRG 2 cut(s) 797, 833
BsiSI CCGG 5 cut(s) 278, 418, 422, 615, 680
BslI CCNNNNNNNGG 2 cut(s) 541, 742
BsmAI GTCTC 2 cut(s) 119, 437
BsmBI CGTCTC 1 cut(s) 119
BsmI GAATGC 2 cut(s) 4, 215
BsnI GGCC 6 cut(s) 182, 344, 421, 656, 719, 735
BsoBI CYCGRG 2 cut(s) 797, 833
Bsp143I GATC 4 cut(s) 501, 529, 553, 725
BspANI GGCC 6 cut(s) 182, 344, 421, 656, 719, 735
BspCNI CTCAG 1 cut(s) 697
BspFNI CGCG 3 cut(s) 414, 564, 824
BspLI GGNNCC 1 cut(s) 1122
BspMI ACCTGC 1 cut(s) 863
BspPI GGATC 2 cut(s) 496, 733
BsrDI GCAATG 2 cut(s) 224, 387
BsrFI RCCGGY 2 cut(s) 421, 614
BssAI RCCGGY 2 cut(s) 421, 614
BssECI CCNNGG 1 cut(s) 64
BssMI GATC 4 cut(s) 501, 529, 553, 725
BssSI CACGAG 1 cut(s) 737
BssT1I CCWWGG 1 cut(s) 64
Bst2BI CACGAG 1 cut(s) 737
BstAPI GCANNNNNTGC 2 cut(s) 488, 1084
BstBAI YACGTR 1 cut(s) 811
BstC8I GCNNGC 4 cut(s) 403, 1006, 1080, 1095
BstDEI CTNAG 1 cut(s) 705
BstF5I GGATG 4 cut(s) 60, 80, 466, 900
BstFNI CGCG 3 cut(s) 414, 564, 824
BstHHI GCGC 3 cut(s) 414, 625, 1078
BstKTI GATC 4 cut(s) 504, 532, 556, 728
BstMAI GTCTC 2 cut(s) 119, 437
BstMBI GATC 4 cut(s) 501, 529, 553, 725
BstMCI CGRYCG 2 cut(s) 422, 720
BstMWI GCNNNNNNNGC 9 cut(s) 53, 411, 418, 479, 488, 611, 620, 1084, 1115
BstNSI RCATGY 1 cut(s) 304
BstUI CGCG 3 cut(s) 414, 564, 824
BstV1I GCAGC 5 cut(s) 85, 147, 494, 774, 1048
BstV2I GAAGAC 1 cut(s) 989
BstZI CGGCCG 2 cut(s) 419, 717
BsuRI GGCC 6 cut(s) 182, 344, 421, 656, 719, 735
BtrI CACGTC 1 cut(s) 955
BtsCI GGATG 4 cut(s) 60, 80, 466, 900
BtsI GCAGTG 1 cut(s) 1089
BtsIMutI CAGTG 2 cut(s) 702, 1089
BveI ACCTGC 1 cut(s) 863
Cac8I GCNNGC 4 cut(s) 403, 1006, 1080, 1095
CfoI GCGC 3 cut(s) 414, 625, 1078
Cfr10I RCCGGY 2 cut(s) 421, 614
Cfr13I GGNCC 1 cut(s) 180
CseI GACGC 2 cut(s) 403, 793
Csp6I GTAC 5 cut(s) 298, 347, 358, 388, 802
CspCI CAANNNNNGTGG 2 cut(s) 303, 338
CviAII CATG 6 cut(s) 169, 301, 319, 441, 511, 541
CviQI GTAC 5 cut(s) 298, 347, 358, 388, 802
DdeI CTNAG 1 cut(s) 705
DpnI GATC 4 cut(s) 503, 531, 555, 727
DpnII GATC 4 cut(s) 501, 529, 553, 725
EaeI YGGCCR 3 cut(s) 419, 654, 717
EagI CGGCCG 2 cut(s) 419, 717
EciI GGCGGA 1 cut(s) 420
EclXI CGGCCG 2 cut(s) 419, 717
Eco130I CCWWGG 1 cut(s) 64
Eco147I AGGCCT 1 cut(s) 735
Eco52I CGGCCG 2 cut(s) 419, 717
Eco72I CACGTG 1 cut(s) 811
Eco88I CYCGRG 2 cut(s) 797, 833
EcoT14I CCWWGG 1 cut(s) 64
EcoT22I ATGCAT 1 cut(s) 6
ErhI CCWWGG 1 cut(s) 64
Esp3I CGTCTC 1 cut(s) 119
FaeI CATG 6 cut(s) 172, 304, 322, 444, 514, 544
FatI CATG 6 cut(s) 168, 300, 318, 440, 510, 540
FauI CCCGC 4 cut(s) 557, 736, 845, 982
Fnu4HI GCNGC 7 cut(s) 99, 136, 483, 654, 788, 1062, 1119
FokI GGATG 4 cut(s) 47, 67, 473, 907
Fsp4HI GCNGC 7 cut(s) 99, 136, 483, 654, 788, 1062, 1119
FspBI CTAG 4 cut(s) 65, 141, 611, 1113
GlaI GCGC 3 cut(s) 413, 624, 1077
GluI GCNGC 7 cut(s) 99, 136, 483, 654, 788, 1062, 1119
GsaI CCCAGC 1 cut(s) 482
HaeIII GGCC 6 cut(s) 182, 344, 421, 656, 719, 735
HapII CCGG 5 cut(s) 278, 418, 422, 615, 680
HgaI GACGC 2 cut(s) 403, 793
HhaI GCGC 3 cut(s) 414, 625, 1078
Hin1II CATG 6 cut(s) 172, 304, 322, 444, 514, 544
Hin6I GCGC 3 cut(s) 412, 623, 1076
HinP1I GCGC 3 cut(s) 412, 623, 1076
HincII GTYRAC 1 cut(s) 306
HindII GTYRAC 1 cut(s) 306
HinfI GANTC 2 cut(s) 203, 464
HpaII CCGG 5 cut(s) 278, 418, 422, 615, 680
HphI GGTGA 2 cut(s) 629, 887
Hpy166II GTNNAC 4 cut(s) 306, 325, 757, 940
Hpy188I TCNGA 4 cut(s) 129, 725, 866, 970
Hpy188III TCNNGA 1 cut(s) 524
Hpy8I GTNNAC 4 cut(s) 306, 325, 757, 940
Hpy99I CGWCG 3 cut(s) 554, 564, 725
HpyAV CCTTC 5 cut(s) 95, 304, 764, 872, 1037
HpyCH4IV ACGT 2 cut(s) 810, 954
HpyCH4V TGCA 9 cut(s) 4, 56, 215, 355, 473, 540, 814, 908, 1087
HpyF10VI GCNNNNNNNGC 9 cut(s) 53, 411, 418, 479, 488, 611, 620, 1084, 1115
HpyF3I CTNAG 1 cut(s) 705
HpySE526I ACGT 2 cut(s) 810, 954
Hsp92II CATG 6 cut(s) 172, 304, 322, 444, 514, 544
HspAI GCGC 3 cut(s) 412, 623, 1076
Kzo9I GATC 4 cut(s) 501, 529, 553, 725
LmnI GCTCC 4 cut(s) 682, 834, 869, 1126
LpnPI CCDG 8 cut(s) 291, 387, 431, 435, 492, 628, 693, 858
Lsp1109I GCAGC 5 cut(s) 85, 147, 494, 774, 1048
LweI GCATC 3 cut(s) 610, 848, 1096
MaeI CTAG 4 cut(s) 65, 141, 611, 1113
MaeII ACGT 2 cut(s) 810, 954
MaeIII GTNAC 4 cut(s) 196, 465, 781, 955
MalI GATC 4 cut(s) 503, 531, 555, 727
MboI GATC 4 cut(s) 501, 529, 553, 725
MboII GAAGA 3 cut(s) 184, 548, 994
MluCI AATT 9 cut(s) 16, 38, 103, 123, 287, 446, 974, 1054, 1141
MlyI GAGTC 2 cut(s) 197, 473
MmeI TCCRAC 3 cut(s) 244, 433, 703
Mph1103I ATGCAT 1 cut(s) 6
MslI CAYNNNNRTG 3 cut(s) 167, 809, 1104
MspA1I CMGCKG 2 cut(s) 98, 989
MspI CCGG 5 cut(s) 278, 418, 422, 615, 680
Mva1269I GAATGC 2 cut(s) 4, 215
MvnI CGCG 3 cut(s) 414, 564, 824
MwoI GCNNNNNNNGC 9 cut(s) 53, 411, 418, 479, 488, 611, 620, 1084, 1115
NdeII GATC 4 cut(s) 501, 529, 553, 725
NlaIII CATG 6 cut(s) 172, 304, 322, 444, 514, 544
NlaIV GGNNCC 1 cut(s) 1122
NmeAIII GCCGAG 1 cut(s) 1090
NmuCI GTSAC 3 cut(s) 465, 781, 955
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 304
PaeR7I CTCGAG 2 cut(s) 797, 833
PaqCI CACCTGC 1 cut(s) 863
PceI AGGCCT 1 cut(s) 735
PciI ACATGT 1 cut(s) 300
PctI GAATGC 2 cut(s) 4, 215
PkrI GCNGC 7 cut(s) 100, 137, 484, 655, 789, 1063, 1120
PleI GAGTC 2 cut(s) 197, 472
PmaCI CACGTG 1 cut(s) 811
PmlI CACGTG 1 cut(s) 811
PpsI GAGTC 2 cut(s) 197, 472
Ppu21I YACGTR 1 cut(s) 811
PscI ACATGT 1 cut(s) 300
PspCI CACGTG 1 cut(s) 811
PspFI CCCAGC 1 cut(s) 478
PspN4I GGNNCC 1 cut(s) 1122
PspPI GGNCC 1 cut(s) 180
PspXI VCTCGAGB 2 cut(s) 797, 833
RsaI GTAC 5 cut(s) 299, 348, 359, 389, 803
RsaNI GTAC 5 cut(s) 298, 347, 358, 388, 802
RseI CAYNNNNRTG 3 cut(s) 167, 809, 1104
SatI GCNGC 7 cut(s) 99, 136, 483, 654, 788, 1062, 1119
Sau3AI GATC 4 cut(s) 501, 529, 553, 725
Sau96I GGNCC 1 cut(s) 180
SchI GAGTC 2 cut(s) 197, 473
SfaNI GCATC 3 cut(s) 610, 848, 1096
Sfr274I CTCGAG 2 cut(s) 797, 833
SlaI CTCGAG 2 cut(s) 797, 833
SmiMI CAYNNNNRTG 3 cut(s) 167, 809, 1104
SmlI CTYRAG 2 cut(s) 797, 833
SmoI CTYRAG 2 cut(s) 797, 833
Sse9I AATT 9 cut(s) 16, 38, 103, 123, 287, 446, 974, 1054, 1141
SseBI AGGCCT 1 cut(s) 735
SspMI CTAG 4 cut(s) 65, 141, 611, 1113
StuI AGGCCT 1 cut(s) 735
StyI CCWWGG 1 cut(s) 64
TaiI ACGT 2 cut(s) 813, 957
TaqI TCGA 5 cut(s) 291, 694, 798, 834, 1104
TasI AATT 9 cut(s) 16, 38, 103, 123, 287, 446, 974, 1054, 1141
TatI WGTACW 2 cut(s) 297, 801
TauI GCSGC 2 cut(s) 656, 1121
TscAI CASTG 2 cut(s) 709, 1089
TseFI GTSAC 3 cut(s) 465, 781, 955
TseI GCWGC 5 cut(s) 98, 135, 482, 787, 1061
Tsp45I GTSAC 3 cut(s) 465, 781, 955
TspDTI ATGAA 3 cut(s) 87, 185, 429
TspRI CASTG 2 cut(s) 709, 1089
XapI RAATTY 5 cut(s) 16, 38, 123, 287, 1054
XceI RCATGY 1 cut(s) 304
XcmI CCANNNNNNNNNTGG 1 cut(s) 587
XhoI CTCGAG 2 cut(s) 797, 833
XmaJI CCTAGG 1 cut(s) 64
XspI CTAG 4 cut(s) 65, 141, 611, 1113
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.