MD17G1260500.v1.1

Belongs to the FPP GGPP synthase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0016407
Physical Location & Seq
Forward (+)
32092614 .. 32093691
1078 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1260500.v1.1.491

Sequence Viewer

Length: 1005 bp
ATGGCTCTTTTTGCGGCGATCCTCCGAAGCTACCGAAGTCCAGCACTTCTCAGAAACCCCATCATTGGCCTCATGAAGTTTCATTCAACCGTTACAAAACTTACCGGTCACTCTAGCGTGTTCGAATTTGACGAATACAAGGCGGCGAAGGCGAAGATGGTGGACGAAGCGTTGAATGCGGCGGTGCCGGTGCAACATCCCGACATAATCCATAGGGCAATGAGGTACTCGCTTTTGGGTGGCGGCAAGCGTGTACTCCCAGTTTTATGCATTGCTTCATGTGAACTAGTTGGGGGGGATGAGTCTCTTGCCCTTCCAACAGCTTGTGCTTTCGAAATGATTCACGCCTGCTCACTTATCCAGGATGATCTCCCCTGCATGGACAACGCCGATCTTCGACGTGGAAAACCCACGAGCCACAAGGTTTTTGGTGAAGATGCTGCGGTTTTAGCCGGTGATGCGCTTCTAGCCCTTGCCTTTGAACACATTGCGGCTAAGACAATAAAAGCAGTCTCGCCGGGGCGCGTGGTTCGAGCCATTGCAGAGATTGGTTCGGCAGTTGGGTCATTAGGCGTCGTGGCGGGTCAAATGATGGACATTCAAAGCGAAGGTAAAGAAGTGACGCTGCGAGAACTGGAGTACATTCATGCGCATAAAACCGCAAGGCTCTTTGAGGCTACGGCAGTTTGTGGAGCACTAATGGGAGGAGGGAACGACATTGAGGTAGAAAGGTTGAGGAAGTATGCTGGTTCCATCGGCCTGTTGTATCAAGTGGTGGATGACATTTTGGATGTCACGAAATCGTCGGAGGAAATGGGAAAGACGGCGGGGAAAGACTTGGTAAGCGATAAGGCAACATATCCCAAGCTGATGGGGATTGAAGGGGCAAAGGATTTTGCTGCCAAGTTGAAGACTCAAGCATTGGAAGAGCTTGCTCATTTCGATGCTGCTAGGGCGGCTCCATTGTACTGTTTCGCTAATTTCGTAGCCAAGAGACAGAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00900 ko01100 ko01110 ko01130 map00900 map01100 map01110 map01130
Pfam Domains
Protein Families
polyprenyl_synt

Protein Analysis

335

Amino Acids

35.87

Weight (kDa)

6.8

Isoelectric Point (pI)

41.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
polyprenyl_synt PF00348 68 - 299 8.3e-55 Polyprenyl synthetase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016407)

Species Orthologous Gene IDs
malus_domestica MD09G1264500.v1.1 MD17G1260500.v1.1
prunus_persica Prupe.3G162100_v2.0.a1
pyrus_communis pycom09g17810 pycom17g26120
rosa_chinensis RchiOBHm_Chr3g0493061
rosa_laevigata RLG00000022731
rosa_multiflora Rmu_sc0003941.1_g000014
rosa_roxburghii Rroxscaffold_6G00391880
rosa_rugosa Rorug03G0258800
rosa_samantha Rh3AG307900 Rh3BG343300 Rh3CG340700 Rh3DG343100
rosa_wichuraiana Rw3G027080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 651
AccB1I GGYRCC 1 cut(s) 184
AccII CGCG 1 cut(s) 525
AclWI GGATC 1 cut(s) 13
AcsI RAATTY 1 cut(s) 125
AcyI GRCGYC 1 cut(s) 573
AfaI GTAC 4 cut(s) 227, 255, 641, 968
AfiI CCNNNNNNNGG 2 cut(s) 65, 379
AgeI ACCGGT 1 cut(s) 104
AgsI TTSAA 6 cut(s) 87, 175, 482, 602, 881, 910
AhlI ACTAGT 1 cut(s) 286
AjiI CACGTC 1 cut(s) 401
AjnI CCWGG 1 cut(s) 360
AluBI AGCT 4 cut(s) 30, 323, 868, 931
AluI AGCT 4 cut(s) 30, 323, 868, 931
Alw21I GWGCWC 1 cut(s) 697
Alw26I GTCTC 3 cut(s) 309, 517, 988
AlwI GGATC 1 cut(s) 13
AoxI GGCC 2 cut(s) 67, 757
ApeKI GCWGC 4 cut(s) 440, 625, 899, 947
ApoI RAATTY 1 cut(s) 125
AsiGI ACCGGT 1 cut(s) 104
Asp700I GAANNNNTTC 1 cut(s) 339
AspLEI GCGC 3 cut(s) 463, 525, 652
AsuC2I CCSGG 1 cut(s) 519
AsuHPI GGTGA 2 cut(s) 443, 467
AsuII TTCGAA 2 cut(s) 123, 333
BanI GGYRCC 1 cut(s) 184
BauI CACGAG 1 cut(s) 412
BbsI GAAGAC 1 cut(s) 917
Bbv12I GWGCWC 1 cut(s) 697
BbvI GCAGC 4 cut(s) 427, 612, 886, 934
BccI CCATC 5 cut(s) 68, 151, 586, 761, 865
BceAI ACGGC 2 cut(s) 696, 840
BciT130I CCWGG 1 cut(s) 362
BcnI CCSGG 1 cut(s) 519
BcoDI GTCTC 3 cut(s) 309, 517, 988
BcuI ACTAGT 1 cut(s) 286
BfaI CTAG 4 cut(s) 114, 287, 467, 951
Bme1390I CCNGG 2 cut(s) 362, 519
BmgBI CACGTC 1 cut(s) 401
BmiI GGNNCC 3 cut(s) 186, 751, 960
BmrFI CCNGG 2 cut(s) 362, 519
BmrI ACTGGG 1 cut(s) 254
BmsI GCATC 3 cut(s) 427, 448, 934
BmuI ACTGGG 1 cut(s) 254
BpiI GAAGAC 1 cut(s) 917
BpmI CTGGAG 1 cut(s) 656
Bpu14I TTCGAA 2 cut(s) 123, 333
BpuEI CTTGAG 1 cut(s) 900
BpuMI CCSGG 1 cut(s) 519
BsaHI GRCGYC 1 cut(s) 573
BsaJI CCNNGG 1 cut(s) 518
BsaWI WCCGGW 1 cut(s) 104
Bsc4I CCNNNNNNNGG 2 cut(s) 65, 379
Bse118I RCCGGY 3 cut(s) 104, 187, 452
Bse1I ACTGG 2 cut(s) 260, 639
Bse3DI GCAATG 4 cut(s) 225, 270, 486, 537
BseBI CCWGG 1 cut(s) 362
BseDI CCNNGG 1 cut(s) 518
BseGI GGATG 5 cut(s) 196, 304, 370, 784, 796
BseLI CCNNNNNNNGG 2 cut(s) 65, 379
BseMI GCAATG 4 cut(s) 225, 270, 486, 537
BseMII CTCAG 1 cut(s) 64
BseNI ACTGG 2 cut(s) 260, 639
BseRI GAGGAG 1 cut(s) 720
BseXI GCAGC 4 cut(s) 427, 612, 886, 934
Bsh1236I CGCG 1 cut(s) 525
BshFI GGCC 2 cut(s) 69, 759
BshNI GGYRCC 1 cut(s) 184
BshTI ACCGGT 1 cut(s) 104
BsiHKAI GWGCWC 1 cut(s) 697
BsiSI CCGG 4 cut(s) 105, 188, 453, 518
BslI CCNNNNNNNGG 2 cut(s) 65, 379
BsmAI GTCTC 3 cut(s) 309, 517, 988
BsmI GAATGC 1 cut(s) 181
BsnI GGCC 2 cut(s) 69, 759
Bsp119I TTCGAA 2 cut(s) 123, 333
Bsp1286I GDGCHC 1 cut(s) 697
Bsp143I GATC 3 cut(s) 18, 367, 391
BspANI GGCC 2 cut(s) 69, 759
BspCNI CTCAG 1 cut(s) 63
BspFNI CGCG 1 cut(s) 525
BspHI TCATGA 1 cut(s) 72
BspLI GGNNCC 3 cut(s) 186, 751, 960
BspPI GGATC 1 cut(s) 13
BspQI GCTCTTC 1 cut(s) 921
BspT104I TTCGAA 2 cut(s) 123, 333
BspT107I GGYRCC 1 cut(s) 184
BsrDI GCAATG 4 cut(s) 225, 270, 486, 537
BsrFI RCCGGY 3 cut(s) 104, 187, 452
BsrI ACTGG 2 cut(s) 260, 639
BssAI RCCGGY 3 cut(s) 104, 187, 452
BssECI CCNNGG 1 cut(s) 518
BssMI GATC 3 cut(s) 18, 367, 391
BssNI GRCGYC 1 cut(s) 573
BssSI CACGAG 1 cut(s) 412
Bst2BI CACGAG 1 cut(s) 412
Bst2UI CCWGG 1 cut(s) 362
Bst4CI ACNGT 2 cut(s) 91, 971
Bst6I CTCTTC 1 cut(s) 921
BstACI GRCGYC 1 cut(s) 573
BstBI TTCGAA 2 cut(s) 123, 333
BstC8I GCNNGC 3 cut(s) 248, 349, 933
BstDEI CTNAG 2 cut(s) 50, 495
BstF5I GGATG 5 cut(s) 196, 304, 370, 784, 796
BstFNI CGCG 1 cut(s) 525
BstHHI GCGC 3 cut(s) 463, 525, 652
BstKTI GATC 3 cut(s) 21, 370, 394
BstMAI GTCTC 3 cut(s) 309, 517, 988
BstMBI GATC 3 cut(s) 18, 367, 391
BstMWI GCNNNNNNNGC 8 cut(s) 11, 149, 176, 449, 458, 467, 953, 956
BstNI CCWGG 1 cut(s) 362
BstSCI CCNGG 2 cut(s) 360, 517
BstUI CGCG 1 cut(s) 525
BstV1I GCAGC 4 cut(s) 427, 612, 886, 934
BstV2I GAAGAC 1 cut(s) 917
BstXI CCANNNNNNTGG 1 cut(s) 871
BsuRI GGCC 2 cut(s) 69, 759
BtrI CACGTC 1 cut(s) 401
BtsCI GGATG 5 cut(s) 196, 304, 370, 784, 796
Cac8I GCNNGC 3 cut(s) 248, 349, 933
CciI TCATGA 1 cut(s) 72
CfoI GCGC 3 cut(s) 463, 525, 652
Cfr10I RCCGGY 3 cut(s) 104, 187, 452
CseI GACGC 2 cut(s) 562, 631
Csp6I GTAC 4 cut(s) 226, 254, 640, 967
CspAI ACCGGT 1 cut(s) 104
CviAII CATG 4 cut(s) 73, 279, 379, 647
CviQI GTAC 4 cut(s) 226, 254, 640, 967
DdeI CTNAG 2 cut(s) 50, 495
DpnI GATC 3 cut(s) 20, 369, 393
DpnII GATC 3 cut(s) 18, 367, 391
Eam1104I CTCTTC 1 cut(s) 921
EarI CTCTTC 1 cut(s) 921
EcoRII CCWGG 1 cut(s) 360
EcoT22I ATGCAT 1 cut(s) 272
FaeI CATG 4 cut(s) 76, 282, 382, 650
FatI CATG 4 cut(s) 72, 278, 378, 646
FauI CCCGC 2 cut(s) 574, 820
FokI GGATG 5 cut(s) 183, 311, 377, 791, 803
FspAI RTGCGCAY 1 cut(s) 651
FspBI CTAG 4 cut(s) 114, 287, 467, 951
FspI TGCGCA 1 cut(s) 651
GlaI GCGC 3 cut(s) 462, 524, 651
GsuI CTGGAG 1 cut(s) 656
HaeIII GGCC 2 cut(s) 69, 759
HapII CCGG 4 cut(s) 105, 188, 453, 518
HgaI GACGC 2 cut(s) 562, 631
HhaI GCGC 3 cut(s) 463, 525, 652
Hin1I GRCGYC 1 cut(s) 573
Hin1II CATG 4 cut(s) 76, 282, 382, 650
Hin6I GCGC 3 cut(s) 461, 523, 650
HinP1I GCGC 3 cut(s) 461, 523, 650
HinfI GANTC 3 cut(s) 302, 340, 913
HpaII CCGG 4 cut(s) 105, 188, 453, 518
HphI GGTGA 2 cut(s) 443, 467
Hpy166II GTNNAC 3 cut(s) 163, 254, 284
Hpy188I TCNGA 3 cut(s) 26, 53, 808
Hpy188III TCNNGA 3 cut(s) 73, 200, 796
Hpy8I GTNNAC 3 cut(s) 163, 254, 284
Hpy99I CGWCG 3 cut(s) 402, 578, 808
HpyAV CCTTC 4 cut(s) 142, 323, 602, 875
HpyCH4III ACNGT 2 cut(s) 91, 971
HpyCH4IV ACGT 1 cut(s) 400
HpyCH4V TGCA 4 cut(s) 193, 270, 378, 542
HpyF10VI GCNNNNNNNGC 8 cut(s) 11, 149, 176, 449, 458, 467, 953, 956
HpyF3I CTNAG 2 cut(s) 50, 495
HpySE526I ACGT 1 cut(s) 400
Hsp92I GRCGYC 1 cut(s) 573
Hsp92II CATG 4 cut(s) 76, 282, 382, 650
HspAI GCGC 3 cut(s) 461, 523, 650
Kzo9I GATC 3 cut(s) 18, 367, 391
LguI GCTCTTC 1 cut(s) 921
LmnI GCTCC 2 cut(s) 692, 964
Lsp1109I GCAGC 4 cut(s) 427, 612, 886, 934
LweI GCATC 3 cut(s) 427, 448, 934
MaeI CTAG 4 cut(s) 114, 287, 467, 951
MaeII ACGT 1 cut(s) 400
MaeIII GTNAC 4 cut(s) 91, 107, 619, 793
MalI GATC 3 cut(s) 20, 369, 393
MboI GATC 3 cut(s) 18, 367, 391
MboII GAAGA 5 cut(s) 166, 386, 446, 922, 938
MhlI GDGCHC 1 cut(s) 697
MluCI AATT 2 cut(s) 125, 979
MlyI GAGTC 2 cut(s) 311, 907
MmeI TCCRAC 2 cut(s) 341, 786
Mph1103I ATGCAT 1 cut(s) 272
MroXI GAANNNNTTC 1 cut(s) 339
MslI CAYNNNNRTG 1 cut(s) 942
MspI CCGG 4 cut(s) 105, 188, 453, 518
MspR9I CCNGG 2 cut(s) 362, 519
Mva1269I GAATGC 1 cut(s) 181
MvaI CCWGG 1 cut(s) 362
MvnI CGCG 1 cut(s) 525
MwoI GCNNNNNNNGC 8 cut(s) 11, 149, 176, 449, 458, 467, 953, 956
NciI CCSGG 1 cut(s) 519
NdeII GATC 3 cut(s) 18, 367, 391
NlaIII CATG 4 cut(s) 76, 282, 382, 650
NlaIV GGNNCC 3 cut(s) 186, 751, 960
NmuCI GTSAC 3 cut(s) 107, 619, 793
NsbI TGCGCA 1 cut(s) 651
NsiI ATGCAT 1 cut(s) 272
NspV TTCGAA 2 cut(s) 123, 333
PagI TCATGA 1 cut(s) 72
PciSI GCTCTTC 1 cut(s) 921
PcsI WCGNNNNNNNCGW 2 cut(s) 129, 981
PctI GAATGC 1 cut(s) 181
PdmI GAANNNNTTC 1 cut(s) 339
PfeI GAWTC 1 cut(s) 340
PfoI TCCNGGA 1 cut(s) 360
PinAI ACCGGT 1 cut(s) 104
PleI GAGTC 2 cut(s) 310, 907
PpsI GAGTC 2 cut(s) 310, 907
Psp6I CCWGG 1 cut(s) 360
PspGI CCWGG 1 cut(s) 360
PspN4I GGNNCC 3 cut(s) 186, 751, 960
RsaI GTAC 4 cut(s) 227, 255, 641, 968
RsaNI GTAC 4 cut(s) 226, 254, 640, 967
RseI CAYNNNNRTG 1 cut(s) 942
SapI GCTCTTC 1 cut(s) 921
Sau3AI GATC 3 cut(s) 18, 367, 391
SchI GAGTC 2 cut(s) 311, 907
ScrFI CCNGG 2 cut(s) 362, 519
SduI GDGCHC 1 cut(s) 697
SfaNI GCATC 3 cut(s) 427, 448, 934
SfuI TTCGAA 2 cut(s) 123, 333
SmiMI CAYNNNNRTG 1 cut(s) 942
SmlI CTYRAG 1 cut(s) 915
SmoI CTYRAG 1 cut(s) 915
SpeI ACTAGT 1 cut(s) 286
Sse9I AATT 2 cut(s) 125, 979
SspMI CTAG 4 cut(s) 114, 287, 467, 951
StyD4I CCNGG 2 cut(s) 360, 517
TaaI ACNGT 2 cut(s) 91, 971
TaiI ACGT 1 cut(s) 403
TaqI TCGA 5 cut(s) 123, 333, 397, 532, 942
TasI AATT 2 cut(s) 125, 979
TatI WGTACW 3 cut(s) 253, 639, 966
TauI GCSGC 6 cut(s) 17, 146, 182, 246, 494, 959
TfiI GAWTC 1 cut(s) 340
TseFI GTSAC 3 cut(s) 107, 619, 793
TseI GCWGC 4 cut(s) 440, 625, 899, 947
Tsp45I GTSAC 3 cut(s) 107, 619, 793
TspDTI ATGAA 4 cut(s) 71, 89, 267, 635
XapI RAATTY 1 cut(s) 125
XcmI CCANNNNNNNNNTGG 1 cut(s) 425
XmnI GAANNNNTTC 1 cut(s) 339
XspI CTAG 4 cut(s) 114, 287, 467, 951
Zsp2I ATGCAT 1 cut(s) 272
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.