MD09G1266700.v1.1
ERF Family

Belongs to the protein kinase superfamily. Ser Thr protein kinase family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
Physical Location & Seq
Reverse (-)
34098597 .. 34099031
435 bp
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UTR
Exon/CDS
Intron
MD09G1266700.v1.1.491

Sequence Viewer

Length: 435 bp
ATGAAGATCACTGTTGCAGGCTTTAGTGTTAGTGTTGATGCACTGAGTGAAGCTCATACTCTTCCCAACAGTGAGCCCAATGAAATCCAAATGGTTGAGGCAGGAAACATGGTGATTTCTATTCAAGTGCTCCGGAACGTGACAAACAATTTCAGTCAGGAAAATATATTGGGGCAAAGAGGTTTTGGGACAGTGTATAAAGGGGAACGGCACGATGGAACAAATATTGCTGTTAAGAGAATTGAGGCTGGGGAAATAGTAGGAAAGGGGCTTTTCGAATTTAAGTCTGAGATTTCTATTTTGACAAAGGTTCGTCACAGGCATCTCGTAGCTTTTCTGGGGTATTGTTTGGATGGAAATGAACGACTTCTTGTAAATGAGTATATGCCTCAAGGGACGCTCAGCCGTTACCTCTTCAACTGGCTGGAAGAATGA

Protein Analysis

145

Amino Acids

16.16

Weight (kDa)

5.82

Isoelectric Point (pI)

38.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 52 - 138 1.2e-12 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 53 - 138 5.1e-14 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012762)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 132
AcsI RAATTY 1 cut(s) 278
AdeI CACNNNGTG 1 cut(s) 47
AgsI TTSAA 2 cut(s) 125, 418
AluBI AGCT 2 cut(s) 53, 332
AluI AGCT 2 cut(s) 53, 332
Alw21I GWGCWC 1 cut(s) 132
Aor13HI TCCGGA 1 cut(s) 132
ApoI RAATTY 1 cut(s) 278
Asp700I GAANNNNTTC 1 cut(s) 366
AsuHPI GGTGA 1 cut(s) 124
AsuII TTCGAA 1 cut(s) 276
BanII GRGCYC 1 cut(s) 78
Bbv12I GWGCWC 1 cut(s) 132
BccI CCATC 2 cut(s) 209, 347
BceAI ACGGC 2 cut(s) 224, 390
BlpI GCTNAGC 1 cut(s) 401
BmsI GCATC 2 cut(s) 28, 331
BplI GAGNNNNNCTC 2 cut(s) 37, 69
Bpu1102I GCTNAGC 1 cut(s) 401
Bpu14I TTCGAA 1 cut(s) 276
BpuEI CTTGAG 1 cut(s) 375
BsaWI WCCGGW 1 cut(s) 132
Bse1I ACTGG 1 cut(s) 425
BseAI TCCGGA 1 cut(s) 132
BseGI GGATG 1 cut(s) 358
BseMII CTCAG 3 cut(s) 35, 279, 415
BseNI ACTGG 1 cut(s) 425
BseYI CCCAGC 1 cut(s) 248
BsiHKAI GWGCWC 1 cut(s) 132
BsiSI CCGG 1 cut(s) 133
BslFI GGGAC 2 cut(s) 202, 409
BsmFI GGGAC 2 cut(s) 202, 409
Bsp119I TTCGAA 1 cut(s) 276
Bsp1286I GDGCHC 2 cut(s) 78, 132
Bsp13I TCCGGA 1 cut(s) 132
Bsp143I GATC 1 cut(s) 6
Bsp1720I GCTNAGC 1 cut(s) 401
BspCNI CTCAG 3 cut(s) 36, 280, 414
BspEI TCCGGA 1 cut(s) 132
BspT104I TTCGAA 1 cut(s) 276
BsrI ACTGG 1 cut(s) 425
BssMI GATC 1 cut(s) 6
Bst4CI ACNGT 3 cut(s) 13, 71, 193
Bst6I CTCTTC 2 cut(s) 66, 419
BstBI TTCGAA 1 cut(s) 276
BstC8I GCNNGC 1 cut(s) 19
BstDEI CTNAG 3 cut(s) 44, 288, 401
BstF5I GGATG 1 cut(s) 358
BstKTI GATC 1 cut(s) 9
BstMBI GATC 1 cut(s) 6
BtsCI GGATG 1 cut(s) 358
BtsIMutI CAGTG 4 cut(s) 9, 41, 76, 198
Cac8I GCNNGC 1 cut(s) 19
CseI GACGC 1 cut(s) 406
CviAII CATG 1 cut(s) 109
CviJI RGCY 8 cut(s) 21, 53, 76, 248, 271, 332, 405, 424
CviKI_1 RGCY 8 cut(s) 21, 53, 76, 248, 271, 332, 405, 424
DdeI CTNAG 3 cut(s) 44, 288, 401
DpnI GATC 1 cut(s) 8
DpnII GATC 1 cut(s) 6
DraIII CACNNNGTG 1 cut(s) 47
Eam1104I CTCTTC 2 cut(s) 66, 419
EarI CTCTTC 2 cut(s) 66, 419
Eco24I GRGCYC 1 cut(s) 78
EcoT38I GRGCYC 1 cut(s) 78
FaeI CATG 1 cut(s) 112
FaiI YATR 6 cut(s) 57, 110, 167, 198, 384, 386
FaqI GGGAC 2 cut(s) 202, 409
FatI CATG 1 cut(s) 108
FokI GGATG 1 cut(s) 365
FriOI GRGCYC 1 cut(s) 78
GsaI CCCAGC 1 cut(s) 252
HapII CCGG 1 cut(s) 133
HgaI GACGC 1 cut(s) 406
Hin1II CATG 1 cut(s) 112
HpaII CCGG 1 cut(s) 133
HphI GGTGA 1 cut(s) 124
Hpy188I TCNGA 1 cut(s) 289
Hpy188III TCNNGA 2 cut(s) 133, 158
HpyCH4III ACNGT 3 cut(s) 13, 71, 193
HpyCH4IV ACGT 1 cut(s) 138
HpyCH4V TGCA 2 cut(s) 17, 41
HpyF3I CTNAG 3 cut(s) 44, 288, 401
HpySE526I ACGT 1 cut(s) 138
Hsp92II CATG 1 cut(s) 112
Kpn2I TCCGGA 1 cut(s) 132
Kzo9I GATC 1 cut(s) 6
LmnI GCTCC 1 cut(s) 135
LpnPI CCDG 9 cut(s) 3, 87, 143, 146, 234, 304, 323, 406, 410
LweI GCATC 2 cut(s) 28, 331
MaeII ACGT 1 cut(s) 138
MaeIII GTNAC 3 cut(s) 139, 314, 407
MalI GATC 1 cut(s) 8
MboI GATC 1 cut(s) 6
MboII GAAGA 3 cut(s) 16, 53, 406
MhlI GDGCHC 2 cut(s) 78, 132
MluCI AATT 3 cut(s) 148, 240, 278
MnlI CCTC 5 cut(s) 91, 173, 238, 399, 422
MroI TCCGGA 1 cut(s) 132
MroXI GAANNNNTTC 1 cut(s) 366
MseI TTAA 2 cut(s) 234, 282
MspI CCGG 1 cut(s) 133
NdeII GATC 1 cut(s) 6
NlaIII CATG 1 cut(s) 112
NmuCI GTSAC 2 cut(s) 139, 314
NspV TTCGAA 1 cut(s) 276
PdmI GAANNNNTTC 1 cut(s) 366
PspFI CCCAGC 1 cut(s) 248
SaqAI TTAA 2 cut(s) 234, 282
Sau3AI GATC 1 cut(s) 6
SduI GDGCHC 2 cut(s) 78, 132
SetI ASST 6 cut(s) 55, 141, 184, 312, 334, 414
SfaNI GCATC 2 cut(s) 28, 331
SfuI TTCGAA 1 cut(s) 276
SmlI CTYRAG 1 cut(s) 390
SmoI CTYRAG 1 cut(s) 390
Sse9I AATT 3 cut(s) 148, 240, 278
SspI AATATT 1 cut(s) 226
TaaI ACNGT 3 cut(s) 13, 71, 193
TaiI ACGT 1 cut(s) 141
TaqI TCGA 1 cut(s) 276
TasI AATT 3 cut(s) 148, 240, 278
Tru1I TTAA 2 cut(s) 234, 282
Tru9I TTAA 2 cut(s) 234, 282
TscAI CASTG 4 cut(s) 16, 48, 76, 198
TseFI GTSAC 2 cut(s) 139, 314
Tsp45I GTSAC 2 cut(s) 139, 314
TspDTI ATGAA 3 cut(s) 17, 96, 375
TspRI CASTG 4 cut(s) 16, 48, 76, 198
XapI RAATTY 1 cut(s) 278
XmnI GAANNNNTTC 1 cut(s) 366
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.