Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0027181.1

Orthogroup ID

OG0012762

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1801

Gene Structure 1801 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0027181.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 727 bp

atggtaatccatcctcgccattctggatctgataatgagagcatgaagataacagttgcaggctctagtgttagcgttggtgctattagtgaagctcacactcttcctagtagtgagccaaacgacatccaaatggttgaagcaggaaacatggtgatatctattcaagtgctacggagtgtgaccaacaatttcagtgaagaaaatatattgggaagaggaggcttcgggaccgtgtataaaggagaactgcatgatggaacaaagattgctgttaagagaatggaggctggggtaatagccggaaaggggcttgcagaatttaagtctgagattgcagttttgaccaaggttcggcacaggcatctagttgctcttctggggtattgtttggatggcaatgaaaggcttcttgtatatgagtatatgcctcaagggacactcagtaggttcatcttcaactggcctgaagaaggactgaagccacttgaatggacaaaaaggttgaccattgcgttagatgtagcaaggggagttgagtatcttcatggtttagcccatcagagttttatacatagagacctaaagccttcaaacattctccttggagatgatatgagggctaaggttgcagattttggtcttgtgcggcttgctccagagggtaaaggttcaattgaaacaagaattgcagggacttttggatatttggcaccagaatatgcag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005576 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_4 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

242

Amino Acids

26.49

Weight (kDa)

6.51

Isoelectric Point (pI)

34.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012762)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66150
fragaria_vesca	FvH4_1g29920
malus_domestica	MD09G1266700.v1.1 MD17G1262700.v1.1
prunus_persica	Prupe.3G164300_v2.0.a1
pyrus_communis	pycom09g17970 pycom17g26270
rosa_chinensis	RchiOBHm_Chr3g0492431
rosa_laevigata	RLG00000022769
rosa_multiflora	Rmu_sc0003156.1_g000009 Rmu_sc0027181.1_g000001
rosa_roxburghii	Rroxscaffold_6G00392320
rosa_rugosa	Rorug03G0253800
rosa_samantha	Rh3AG304000 Rh3BG339900 Rh3CG337100 Rh3DG339100
rosa_wichuraiana	Rw3G026800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	712
AciI	CCGC	1 cut(s)	649
AclWI	GGATC	1 cut(s)	34
AcsI	RAATTY	1 cut(s)	320
AcuI	CTGAAG	2 cut(s)	489, 500
AfiI	CCNNNNNNNGG	3 cut(s)	309, 354, 473
AgsI	TTSAA	7 cut(s)	140, 167, 460, 491, 594, 675, 680
AluBI	AGCT	1 cut(s)	95
AluI	AGCT	1 cut(s)	95
Alw26I	GTCTC	1 cut(s)	573
AlwI	GGATC	1 cut(s)	34
AoxI	GGCC	1 cut(s)	464
ApoI	RAATTY	1 cut(s)	320
Asp700I	GAANNNNTTC	1 cut(s)	408
AspS9I	GGNCC	1 cut(s)	231
AsuHPI	GGTGA	1 cut(s)	166
AvaII	GGWCC	1 cut(s)	231
BanI	GGYRCC	1 cut(s)	712
BccI	CCATC	4 cut(s)	18, 251, 389, 567
BcoDI	GTCTC	1 cut(s)	573
BfaI	CTAG	3 cut(s)	66, 108, 368
BisI	GCNGC	1 cut(s)	650
BlsI	GCNGC	1 cut(s)	651
Bme18I	GGWCC	1 cut(s)	231
BmgT120I	GGNCC	1 cut(s)	231
BmiI	GGNNCC	2 cut(s)	232, 714
BmsI	GCATC	1 cut(s)	373
BpmI	CTGGAG	1 cut(s)	642
Bpu10I	CCTNAGC	1 cut(s)	624
BpuEI	CTTGAG	1 cut(s)	417
BsaI	GGTCTC	1 cut(s)	573
BsaJI	CCNNGG	2 cut(s)	348, 604
Bsc4I	CCNNNNNNNGG	3 cut(s)	309, 354, 473
Bse1I	ACTGG	1 cut(s)	467
Bse3DI	GCAATG	2 cut(s)	406, 510
BseDI	CCNNGG	2 cut(s)	348, 604
BseGI	GGATG	3 cut(s)	10, 126, 400
BseLI	CCNNNNNNNGG	3 cut(s)	309, 354, 473
BseMI	GCAATG	2 cut(s)	406, 510
BseMII	CTCAG	2 cut(s)	321, 457
BseNI	ACTGG	1 cut(s)	467
BseRI	GAGGAG	1 cut(s)	234
BseYI	CCCAGC	1 cut(s)	290
BshFI	GGCC	1 cut(s)	466
BshNI	GGYRCC	1 cut(s)	712
BsiSI	CCGG	1 cut(s)	303
BslFI	GGGAC	3 cut(s)	244, 451, 709
BslI	CCNNNNNNNGG	3 cut(s)	309, 354, 473
BsmAI	GTCTC	1 cut(s)	573
BsmFI	GGGAC	3 cut(s)	244, 451, 709
BsnI	GGCC	1 cut(s)	466
Bso31I	GGTCTC	1 cut(s)	573
Bsp143I	GATC	1 cut(s)	26
BspACI	CCGC	1 cut(s)	649
BspANI	GGCC	1 cut(s)	466
BspCNI	CTCAG	2 cut(s)	322, 456
BspLI	GGNNCC	2 cut(s)	232, 714
BspPI	GGATC	1 cut(s)	34
BspQI	GCTCTTC	1 cut(s)	381
BspT107I	GGYRCC	1 cut(s)	712
BspTNI	GGTCTC	1 cut(s)	573
BsrDI	GCAATG	2 cut(s)	406, 510
BsrI	ACTGG	1 cut(s)	467
BssECI	CCNNGG	2 cut(s)	348, 604
BssMI	GATC	1 cut(s)	26
BssT1I	CCWWGG	2 cut(s)	348, 604
Bst4CI	ACNGT	2 cut(s)	55, 235
Bst6I	CTCTTC	3 cut(s)	108, 211, 381
BstC8I	GCNNGC	3 cut(s)	61, 315, 654
BstDEI	CTNAG	3 cut(s)	330, 443, 624
BstENI	CCTNNNNNAGG	1 cut(s)	471
BstF5I	GGATG	3 cut(s)	10, 126, 400
BstKTI	GATC	1 cut(s)	29
BstMAI	GTCTC	1 cut(s)	573
BstMBI	GATC	1 cut(s)	26
BstMWI	GCNNNNNNNGC	1 cut(s)	629
BstX2I	RGATCY	1 cut(s)	26
BstXI	CCANNNNNNTGG	1 cut(s)	492
BstYI	RGATCY	1 cut(s)	26
BsuRI	GGCC	1 cut(s)	466
BtsCI	GGATG	3 cut(s)	10, 126, 400
BtsIMutI	CAGTG	1 cut(s)	202
Cac8I	GCNNGC	3 cut(s)	61, 315, 654
Cfr13I	GGNCC	1 cut(s)	231
CviAII	CATG	4 cut(s)	43, 151, 254, 548
DdeI	CTNAG	3 cut(s)	330, 443, 624
DpnI	GATC	1 cut(s)	28
DpnII	GATC	1 cut(s)	26
Eam1104I	CTCTTC	3 cut(s)	108, 211, 381
EarI	CTCTTC	3 cut(s)	108, 211, 381
Eco130I	CCWWGG	2 cut(s)	348, 604
Eco31I	GGTCTC	1 cut(s)	573
Eco32I	GATATC	1 cut(s)	159
Eco47I	GGWCC	1 cut(s)	231
Eco57I	CTGAAG	2 cut(s)	489, 500
EcoNI	CCTNNNNNAGG	1 cut(s)	471
EcoRV	GATATC	1 cut(s)	159
EcoT14I	CCWWGG	2 cut(s)	348, 604
ErhI	CCWWGG	2 cut(s)	348, 604
FaeI	CATG	4 cut(s)	46, 154, 257, 551
FaqI	GGGAC	3 cut(s)	244, 451, 709
FatI	CATG	4 cut(s)	42, 150, 253, 547
Fnu4HI	GCNGC	1 cut(s)	650
FokI	GGATG	2 cut(s)	113, 407
Fsp4HI	GCNGC	1 cut(s)	650
FspBI	CTAG	3 cut(s)	66, 108, 368
GluI	GCNGC	1 cut(s)	650
GsaI	CCCAGC	1 cut(s)	294
GsuI	CTGGAG	1 cut(s)	642
HaeIII	GGCC	1 cut(s)	466
HapII	CCGG	1 cut(s)	303
Hin1II	CATG	4 cut(s)	46, 154, 257, 551
HincII	GTYRAC	1 cut(s)	507
HindII	GTYRAC	1 cut(s)	507
HpaII	CCGG	1 cut(s)	303
HphI	GGTGA	1 cut(s)	166
Hpy166II	GTNNAC	1 cut(s)	507
Hpy188I	TCNGA	3 cut(s)	31, 331, 564
Hpy188III	TCNNGA	3 cut(s)	24, 229, 659
Hpy8I	GTNNAC	1 cut(s)	507
HpyAV	CCTTC	2 cut(s)	467, 600
HpyCH4III	ACNGT	2 cut(s)	55, 235
HpyCH4V	TGCA	7 cut(s)	59, 253, 317, 338, 632, 692, 725
HpyF10VI	GCNNNNNNNGC	1 cut(s)	629
HpyF3I	CTNAG	3 cut(s)	330, 443, 624
Hsp92II	CATG	4 cut(s)	46, 154, 257, 551
Kzo9I	GATC	1 cut(s)	26
LguI	GCTCTTC	1 cut(s)	381
LmnI	GCTCC	1 cut(s)	661
LweI	GCATC	1 cut(s)	373
MaeI	CTAG	3 cut(s)	66, 108, 368
MaeIII	GTNAC	1 cut(s)	181
MalI	GATC	1 cut(s)	28
MboI	GATC	1 cut(s)	26
MboII	GAAGA	8 cut(s)	58, 95, 212, 228, 368, 448, 482, 536
MfeI	CAATTG	1 cut(s)	675
MflI	RGATCY	1 cut(s)	26
MluCI	AATT	4 cut(s)	190, 320, 675, 687
MnlI	CCTC	7 cut(s)	24, 212, 215, 280, 441, 612, 655
MroXI	GAANNNNTTC	1 cut(s)	408
MseI	TTAA	2 cut(s)	276, 324
MslI	CAYNNNNRTG	2 cut(s)	131, 490
MspI	CCGG	1 cut(s)	303
MunI	CAATTG	1 cut(s)	675
MwoI	GCNNNNNNNGC	1 cut(s)	629
NdeII	GATC	1 cut(s)	26
NlaIII	CATG	4 cut(s)	46, 154, 257, 551
NlaIV	GGNNCC	2 cut(s)	232, 714
NmuCI	GTSAC	1 cut(s)	181
PciSI	GCTCTTC	1 cut(s)	381
PdmI	GAANNNNTTC	1 cut(s)	408
PkrI	GCNGC	1 cut(s)	651
PspFI	CCCAGC	1 cut(s)	290
PspN4I	GGNNCC	2 cut(s)	232, 714
PspPI	GGNCC	1 cut(s)	231
PsuI	RGATCY	1 cut(s)	26
RseI	CAYNNNNRTG	2 cut(s)	131, 490
SapI	GCTCTTC	1 cut(s)	381
SaqAI	TTAA	2 cut(s)	276, 324
SatI	GCNGC	1 cut(s)	650
Sau3AI	GATC	1 cut(s)	26
Sau96I	GGNCC	1 cut(s)	231
SetI	ASST	7 cut(s)	97, 354, 452, 506, 585, 630, 673
SfaNI	GCATC	1 cut(s)	373
SinI	GGWCC	1 cut(s)	231
SmiMI	CAYNNNNRTG	2 cut(s)	131, 490
SmlI	CTYRAG	1 cut(s)	432
SmoI	CTYRAG	1 cut(s)	432
Sse9I	AATT	4 cut(s)	190, 320, 675, 687
SsiI	CCGC	1 cut(s)	649
SspMI	CTAG	3 cut(s)	66, 108, 368
StyI	CCWWGG	2 cut(s)	348, 604
TaaI	ACNGT	2 cut(s)	55, 235
TasI	AATT	4 cut(s)	190, 320, 675, 687
TauI	GCSGC	1 cut(s)	652
Tru1I	TTAA	2 cut(s)	276, 324
Tru9I	TTAA	2 cut(s)	276, 324
TscAI	CASTG	1 cut(s)	202
TseFI	GTSAC	1 cut(s)	181
Tsp45I	GTSAC	1 cut(s)	181
TspDTI	ATGAA	4 cut(s)	59, 417, 442, 536
TspGWI	ACGGA	1 cut(s)	190
TspRI	CASTG	1 cut(s)	202
VpaK11BI	GGWCC	1 cut(s)	231
XagI	CCTNNNNNAGG	1 cut(s)	471
XapI	RAATTY	1 cut(s)	320
XmnI	GAANNNNTTC	1 cut(s)	408
XspI	CTAG	3 cut(s)	66, 108, 368

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.