Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0012762

Physical Location & Seq

Genomic Coordinates Reverse (-)

18551411 .. 18555844

Gene Structure 4434 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g17970.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3108 bp

ATGTGCATGCCAGTCAGTCCTTCCTTCCTTCCTCCATTCCTAGAAAAAGCTTCTCTCCTCTCTGCCTACACCCTCTCTTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCTCTCTCAAACCTTGTTATCATACCCAATAATATGGAATCAAGTTCTTGACACAAACACTTTGTACAAAACCCACCTCCTAAATCTCTCTCTCTCTCTCTCTCTCTCTCTCACATCTGAAAGTTTTTTCAAGATGAAGAAGAAAACCCATGCTGGGTTCAAGTTTTTGGCCATTTTGCTTGCTGGGTTTTCATCGTTCTTGCTGTGTGCCAACTCCCAACCGAGTTCAAGCAACGATGCTGCTGTAATGCTGGCTCTGAAGAAAACCCTTAATCCATCTGAATCTCTCGGATGGTCCGACCCGGACCCCTGCACATGGACCCATGTGGGCTGCTCGGACGACAAGAGGGTGACCAGGATCCAACTGGGTCACCTCAATATAGAAGGTACGCTTCCTTCAAGCCTCCAAAACCTCACTCAACTCGAGCGCTTAGAGCTTCAATGGAACAAAATTACAGGTCCTCTTCCGAGCCTTAGTGGGTTAAGTGCATTGCAAGTTCTAATGCTCAGCAACAATTTGTTTACTTCAATTCCTGGTGATTTTTTCTCTGGTATGACTTCCCTTCAATCTGTTGGGATTGATAACAACCCTTTTATGAGTTGGGAAATTCCTGAAACTCTCAAGAGTGCAGCATCAATTCAAAACTTTTCGGCCAATTCGGCCAACATTACCGGAAAAATACCCCATTTTTTCGGTGGAGATGGGTTTCCGAGTCTGGTTAACTTGCACTTGGCCTTCAATGGCCTCCAAGGAGAACTGCCCGCGAGCTTTTCCGGGTTGCAAATTCAGTCTTTGTGGCTTAATGGGCAAGAAAGTGTAGGTAAGCTCGGTGGAAGCATTGCTGTGTTACAGAACATGACTCTGTTGAAAGAGGTTTGGCTGCATTCGAACGCGTTTTCAGGTCCATTACCGGACTTTTCAGGTTTGACCGACTTGCGGAGCTTGAGTTTGAGAGATAATTTGTTTACTGGACCTGTTCCAGTGTCATTGGTGAGCCTTAAGTCACTAGAGGCTGTGAATTTGACAAACAATTTGCTTCAAGGACCAATGCCGGCTTTTGTTCCGGGGGTTGCGGTAGATTTGGTTAAGGGTTCTAATAACTTTTGCCTACCGAGTCCTGGTGAATGTGACCCTCGAGTGAATACGTTGCTTTCAATTGTGAGTTCAGTGGGTTACCCCCAAAGGTTTGCAGAGAATTGGAAGGGGAATAATCCCTGTGCAGATTGGATTGGGGTTACTTGTAATAATGGGAACATTACGGTCCTCAATTTTCAGAAAATGGGTCTTGCTGGAACGATTTCTCCCGAAATCGCGTCTTTGAAGTCCCTGCAAAGAGTAGTTCTTGCTGATAACAATTTAACTGGAACGATTCCAGCGGAGCTTGCCACGCTGCCTGCACTCACGGTATTTGATGTGTCAAACAATAACCTCTATGGGAAAACCCCAGCTTTTAAGGATAAGGTGCTTGTAATGTTTGGTAACCCTGATATAGGGAAGAAAAAGAGTACTTCAGCTGGACCGTCTCAAAATTCCACCAACCCTTCTACAAGTGTAGGTTCTGGAAACAGTTCTAGACCTCATGGAAAGAAATCTTCAACTCTAATAGGAGTCATTGTGTTCTCTGTAATCGGGGGTGTTTTTGTGATTTTATTAATTGTGCTGTTGCTTATCTGTGTATATAGAACAAAACAAAAGCAGTTGAGTAGAGTTCAGAGCCCGAATGAAATGGTAGTTCATCCCCGCCACTCTGGATCGGATAATGAGAGCATGAAGATAACTGTTGCAGGCTCTAGTGTTAGTGTTGGTGCACTGAGTGAAGCTCATACTCTTCCCAGCAGTGAGCCCAATGAAATCCAAATGGTTGAGGCAGGAAACATGGTGATTTCTATTCAAGTGCTCCGGAATGTGACAAACAATTTCAGTCAGGAAAATATATTGGGGCAAGGAGGTTTTGGGACAGTGTATAAAGGGGAACTGCACGACGGAACAAAGATTGCTGTTAAGAGAATGGAGGCTGGCGTAATAGTAGGAAAGGGTCTTTCCGAATTTAAGTCTGAGATTTCTGTTTTGACGAAGGTTCGTCACAGGCATCTCGTAGCTCTTCTGGGGTATTGTTTGGATGGAAATGAACGGCTTCTTGTATATGAGTATATGCCTCAAGGGATGCTCAGCCGGTACATCTTCAACTGGCCAGAAGAAGGACTGAAACCACTGGAATGGACGAGACGGCTCACAATTGCCTTAGATGTAGCAAGGGGTGTTGAGTATCTCCATGGTTTGGCCCATCAGAGTTTTATACATAGGGACTTAAAGCCTTCAAATATTCTTCTTGGAGATGATATGAGAGCTAAGGTCGCAGATTTCGGTCTTGTGCGGCTTGCTCCAGAGGGTAAAGGTTCAATTGAAACAAGGATTGCAGGGACTTTTGGATACCTGGCACCAGAATATGCAGTTACTGGCCGCGTGACAACTAAAGTAGATGTGTTCAGTTTTGGAGTGATTTTGATGGAGCTAATCACCGGGAGAAAGGCACTTGATGACAGCCAGCCTGAGGAGAGCATGCACTTAGTAACTTGGTTCCGGAGAATGTTCATCAACAAGGACTCATTCAGCAAGGCGATTGATCCCACAATTGATCTCAATGAGGAAACACTTGCCAGTGTGAGTACTGTTGCCGAATTAGCAGGTCATTGCTGTGCAAGAGAGCCGTATCAAAGGCCCGACATGGGCCACACTGTGAATGTCTTATCGACTCTGGTGGAGCTTTGGAAACCAACTGATCAAAGTTCTGAAGATATATATGGTATAGACTTTGAAATGTCGTTGCCGCAAGCACTTAAGAAGTGGCAGGCTTTTGAAGGTAGAAGCAATTTGGAATCCTCTTCTTCATCGCTTCCTCCCAGCTTGGATAACACTCAGACGAGCATCCCTACACGCCCTTATGGATTTGCTGAGTCTTTCACATCTGCAGATGGGAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005576 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_4 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

1036

Amino Acids

112.23

Weight (kDa)

6.4

Isoelectric Point (pI)

38.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	119 - 154	3.7e-07	Leucine rich repeat N-terminal domain
LRR_8	PF13855	200 - 239	1e-06	Leucine rich repeat
LRRNT_2	PF08263	422 - 457	1.7e-06	Leucine rich repeat N-terminal domain
Pkinase	PF00069	683 - 953	1.5e-45	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	684 - 908	3.7e-44	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012762)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66150
fragaria_vesca	FvH4_1g29920
malus_domestica	MD09G1266700.v1.1 MD17G1262700.v1.1
prunus_persica	Prupe.3G164300_v2.0.a1
pyrus_communis	pycom09g17970 pycom17g26270
rosa_chinensis	RchiOBHm_Chr3g0492431
rosa_laevigata	RLG00000022769
rosa_multiflora	Rmu_sc0003156.1_g000009 Rmu_sc0027181.1_g000001
rosa_roxburghii	Rroxscaffold_6G00392320
rosa_rugosa	Rorug03G0253800
rosa_samantha	Rh3AG304000 Rh3BG339900 Rh3CG337100 Rh3DG339100
rosa_wichuraiana	Rw3G026800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	2801
AccB1I	GGYRCC	1 cut(s)	2563
AccB7I	CCANNNNNTGG	1 cut(s)	2404
AccII	CGCG	4 cut(s)	890, 1019, 1439, 2589
AccIII	TCCGGA	2 cut(s)	2025, 2706
AciI	CCGC	8 cut(s)	888, 1063, 1199, 1502, 1867, 2500, 2587, 2954
AclWI	GGATC	4 cut(s)	478, 491, 1885, 2744
AcoI	YGGCCR	5 cut(s)	294, 777, 786, 2315, 2584
AcsI	RAATTY	5 cut(s)	732, 909, 1144, 1654, 2171
AcuI	CTGAAG	3 cut(s)	404, 1620, 2937
AdeI	CACNNNGTG	2 cut(s)	1940, 2863
AfaI	GTAC	5 cut(s)	191, 514, 1633, 2303, 2794
AfeI	AGCGCT	1 cut(s)	554
AfiI	CCNNNNNNNGG	9 cut(s)	279, 441, 1062, 1244, 1616, 2324, 2404, 2677, 2852
AflII	CTTAAG	2 cut(s)	1124, 2963
AflIII	ACRYGT	1 cut(s)	1017
AjnI	CCWGG	4 cut(s)	479, 658, 1243, 2559
AloI	GAACNNNNNNTCC	2 cut(s)	1411, 1443
Alw21I	GWGCWC	2 cut(s)	1936, 2025
Alw26I	GTCTC	2 cut(s)	1653, 2344
Alw44I	GTGCAC	1 cut(s)	1932
AlwI	GGATC	4 cut(s)	478, 491, 1885, 2744
AlwNI	CAGNNNCTG	1 cut(s)	2582
Ama87I	CYCGRG	2 cut(s)	548, 1260
Aor13HI	TCCGGA	2 cut(s)	2025, 2706
Aor51HI	AGCGCT	1 cut(s)	554
ApaLI	GTGCAC	1 cut(s)	1932
ApeKI	GCWGC	5 cut(s)	365, 456, 755, 1006, 1516
ApoI	RAATTY	5 cut(s)	732, 909, 1144, 1654, 2171
ArsI	GACNNNNNNTTYG	2 cut(s)	1141, 1173
AseI	ATTAAT	1 cut(s)	1778
Asp700I	GAANNNNTTC	3 cut(s)	1423, 1693, 2259
AspLEI	GCGC	1 cut(s)	555
AsuC2I	CCSGG	4 cut(s)	428, 901, 1191, 2647
AsuHPI	GGTGA	7 cut(s)	487, 488, 674, 1129, 1259, 2017, 2635
AsuII	TTCGAA	1 cut(s)	1013
AvaI	CYCGRG	2 cut(s)	548, 1260
AvaII	GGWCC	9 cut(s)	420, 430, 444, 584, 1028, 1097, 1169, 1387, 1643
AxyI	CCTNAGG	1 cut(s)	2676
BaeGI	GKGCMC	1 cut(s)	1936
BalI	TGGCCA	2 cut(s)	296, 2317
BamHI	GGATCC	1 cut(s)	483
BanI	GGYRCC	1 cut(s)	2563
BanII	GRGCYC	2 cut(s)	1844, 1971
BarI	GAAGNNNNNNTAC	2 cut(s)	505, 537
Bbv12I	GWGCWC	2 cut(s)	1936, 2025
BbvI	GCAGC	5 cut(s)	352, 443, 767, 993, 1503
BccI	CCATC	7 cut(s)	409, 411, 821, 2240, 2418, 2626, 3092
BceAI	ACGGC	3 cut(s)	2273, 2369, 2818
BciT130I	CCWGG	4 cut(s)	481, 660, 1245, 2561
BciVI	GTATCC	1 cut(s)	2549
BclI	TGATCA	1 cut(s)	2905
BcnI	CCSGG	4 cut(s)	428, 901, 1191, 2647
BcoDI	GTCTC	2 cut(s)	1653, 2344
BfaI	CTAG	4 cut(s)	41, 1133, 1698, 1917
BfmI	CTRYAG	1 cut(s)	3093
BfoI	RGCGCY	1 cut(s)	556
BfrI	CTTAAG	2 cut(s)	1124, 2963
BfuAI	ACCTGC	1 cut(s)	2801
BfuI	GTATCC	1 cut(s)	2549
BglI	GCCNNNNNGGC	1 cut(s)	785
BisI	GCNGC	8 cut(s)	366, 457, 756, 1007, 1517, 2501, 2587, 2954
BlpI	GCTNAGC	2 cut(s)	632, 2294
BlsI	GCNGC	8 cut(s)	367, 458, 757, 1008, 1518, 2502, 2588, 2955
BmcAI	AGTACT	2 cut(s)	1633, 2794
Bme1390I	CCNGG	8 cut(s)	428, 481, 660, 901, 1191, 1245, 2561, 2647
Bme18I	GGWCC	9 cut(s)	420, 430, 444, 584, 1028, 1097, 1169, 1387, 1643
BmeT110I	CYCGRG	2 cut(s)	548, 1260
BmiI	GGNNCC	5 cut(s)	432, 446, 485, 2565, 2705
BmrFI	CCNGG	8 cut(s)	428, 481, 660, 901, 1191, 1245, 2561, 2647
BmrI	ACTGGG	1 cut(s)	500
BmsI	GCATC	5 cut(s)	352, 767, 2224, 2280, 3060
BmuI	ACTGGG	1 cut(s)	500
BplI	GAGNNNNNCTC	2 cut(s)	1930, 1962
BpmI	CTGGAG	1 cut(s)	2493
Bpu10I	CCTNAGC	1 cut(s)	2475
Bpu1102I	GCTNAGC	2 cut(s)	632, 2294
Bpu14I	TTCGAA	1 cut(s)	1013
BpuEI	CTTGAG	3 cut(s)	731, 1090, 2268
BpuMI	CCSGG	4 cut(s)	428, 901, 1191, 2647
BsaJI	CCNNGG	3 cut(s)	874, 1190, 2398
BsaWI	WCCGGW	4 cut(s)	797, 1036, 2025, 2706
BsaXI	ACNNNNNCTCC	6 cut(s)	1057, 1087, 1411, 1441, 1725, 1755
Bsc4I	CCNNNNNNNGG	9 cut(s)	279, 441, 1062, 1244, 1616, 2324, 2404, 2677, 2852
Bse118I	RCCGGY	2 cut(s)	1177, 2298
Bse1I	ACTGG	9 cut(s)	11, 495, 1099, 1106, 1492, 2318, 2343, 2587, 2784
Bse21I	CCTNAGG	1 cut(s)	2676
Bse3DI	GCAATG	3 cut(s)	614, 963, 2815
BseAI	TCCGGA	2 cut(s)	2025, 2706
BseBI	CCWGG	4 cut(s)	481, 660, 1245, 2561
BseDI	CCNNGG	3 cut(s)	874, 1190, 2398
BseGI	GGATG	5 cut(s)	422, 1861, 2251, 2295, 3051
BseLI	CCNNNNNNNGG	9 cut(s)	279, 441, 1062, 1244, 1616, 2324, 2404, 2677, 2852
BseMI	GCAATG	3 cut(s)	614, 963, 2815
BseMII	CTCAG	7 cut(s)	646, 1928, 2172, 2308, 2667, 3056, 3069
BseNI	ACTGG	9 cut(s)	11, 495, 1099, 1106, 1492, 2318, 2343, 2587, 2784
BseRI	GAGGAG	2 cut(s)	47, 2693
BseSI	GKGCMC	1 cut(s)	1936
BseXI	GCAGC	5 cut(s)	352, 443, 767, 993, 1503
BseYI	CCCAGC	5 cut(s)	278, 308, 1570, 1958, 3026
BsgI	GTGCAG	5 cut(s)	421, 774, 1365, 1506, 2087
Bsh1236I	CGCG	4 cut(s)	890, 1019, 1439, 2589
BshNI	GGYRCC	1 cut(s)	2563
BsiHKAI	GWGCWC	2 cut(s)	1936, 2025
BsiHKCI	CYCGRG	2 cut(s)	548, 1260
BslFI	GGGAC	4 cut(s)	1435, 2095, 2444, 2560
BslI	CCNNNNNNNGG	9 cut(s)	279, 441, 1062, 1244, 1616, 2324, 2404, 2677, 2852
BsmAI	GTCTC	2 cut(s)	1653, 2344
BsmBI	CGTCTC	2 cut(s)	1653, 2344
BsmFI	GGGAC	4 cut(s)	1435, 2095, 2444, 2560
BsmI	GAATGC	1 cut(s)	1009
BsoBI	CYCGRG	2 cut(s)	548, 1260
Bsp119I	TTCGAA	1 cut(s)	1013
Bsp1286I	GDGCHC	4 cut(s)	1844, 1936, 1971, 2025
Bsp13I	TCCGGA	2 cut(s)	2025, 2706
Bsp1407I	TGTACA	1 cut(s)	189
Bsp143I	GATC	5 cut(s)	483, 1877, 2749, 2761, 2905
Bsp1720I	GCTNAGC	2 cut(s)	632, 2294
Bsp19I	CCATGG	1 cut(s)	2398
BspACI	CCGC	8 cut(s)	888, 1063, 1199, 1502, 1867, 2500, 2587, 2954
BspCNI	CTCAG	7 cut(s)	645, 1929, 2173, 2307, 2668, 3055, 3070
BspEI	TCCGGA	2 cut(s)	2025, 2706
BspFNI	CGCG	4 cut(s)	890, 1019, 1439, 2589
BspLI	GGNNCC	5 cut(s)	432, 446, 485, 2565, 2705
BspMAI	CTGCAG	1 cut(s)	3097
BspMI	ACCTGC	1 cut(s)	2801
BspPI	GGATC	4 cut(s)	478, 491, 1885, 2744
BspQI	GCTCTTC	1 cut(s)	2232
BspT104I	TTCGAA	1 cut(s)	1013
BspT107I	GGYRCC	1 cut(s)	2563
BspTI	CTTAAG	2 cut(s)	1124, 2963
BsrDI	GCAATG	3 cut(s)	614, 963, 2815
BsrFI	RCCGGY	2 cut(s)	1177, 2298
BsrGI	TGTACA	1 cut(s)	189
BsrI	ACTGG	9 cut(s)	11, 495, 1099, 1106, 1492, 2318, 2343, 2587, 2784
BssAI	RCCGGY	2 cut(s)	1177, 2298
BssECI	CCNNGG	3 cut(s)	874, 1190, 2398
BssMI	GATC	5 cut(s)	483, 1877, 2749, 2761, 2905
BssT1I	CCWWGG	2 cut(s)	874, 2398
Bst2UI	CCWGG	4 cut(s)	481, 660, 1245, 2561
Bst4CI	ACNGT	8 cut(s)	1387, 1531, 1647, 1694, 1906, 2086, 2797, 2863
Bst6I	CTCTTC	5 cut(s)	82, 594, 1959, 2232, 3013
BstAFI	CTTAAG	2 cut(s)	1124, 2963
BstAUI	TGTACA	1 cut(s)	189
BstBI	TTCGAA	1 cut(s)	1013
BstDSI	CCRYGG	1 cut(s)	2398
BstEII	GGTNACC	4 cut(s)	475, 494, 1298, 1604
BstENI	CCTNNNNNAGG	1 cut(s)	1614
BstF5I	GGATG	5 cut(s)	422, 1861, 2251, 2295, 3051
BstFNI	CGCG	4 cut(s)	890, 1019, 1439, 2589
BstH2I	RGCGCY	1 cut(s)	556
BstHHI	GCGC	1 cut(s)	555
BstKTI	GATC	5 cut(s)	486, 1880, 2752, 2764, 2908
BstMAI	GTCTC	2 cut(s)	1653, 2344
BstMBI	GATC	5 cut(s)	483, 1877, 2749, 2761, 2905
BstMWI	GCNNNNNNNGC	7 cut(s)	559, 785, 931, 1508, 1513, 2480, 2807
BstNI	CCWGG	4 cut(s)	481, 660, 1245, 2561
BstNSI	RCATGY	2 cut(s)	10, 2689
BstPI	GGTNACC	4 cut(s)	475, 494, 1298, 1604
BstSCI	CCNGG	8 cut(s)	426, 479, 658, 899, 1189, 1243, 2559, 2645
BstSFI	CTRYAG	1 cut(s)	3093
BstSLI	GKGCMC	1 cut(s)	1936
BstUI	CGCG	4 cut(s)	890, 1019, 1439, 2589
BstV1I	GCAGC	5 cut(s)	352, 443, 767, 993, 1503
BstX2I	RGATCY	1 cut(s)	483
BstXI	CCANNNNNNTGG	2 cut(s)	159, 2343
BstYI	RGATCY	1 cut(s)	483
Bsu36I	CCTNAGG	1 cut(s)	2676
BsuI	GTATCC	1 cut(s)	2549
BtgI	CCRYGG	1 cut(s)	2398
BtgZI	GCGATG	1 cut(s)	3000
BtsCI	GGATG	5 cut(s)	422, 1861, 2251, 2295, 3051
BtsI	GCAGTG	1 cut(s)	1969
BtsIMutI	CAGTG	8 cut(s)	1113, 1299, 1934, 1969, 2091, 2336, 2791, 2859
BveI	ACCTGC	1 cut(s)	2801
CaiI	CAGNNNCTG	1 cut(s)	2582
CfoI	GCGC	1 cut(s)	555
Cfr10I	RCCGGY	2 cut(s)	1177, 2298
CseI	GACGC	1 cut(s)	1428
Csp6I	GTAC	5 cut(s)	190, 513, 1632, 2302, 2793
CviQI	GTAC	5 cut(s)	190, 513, 1632, 2302, 2793
DpnI	GATC	5 cut(s)	485, 1879, 2751, 2763, 2907
DpnII	GATC	5 cut(s)	483, 1877, 2749, 2761, 2905
DraIII	CACNNNGTG	2 cut(s)	1940, 2863
EaeI	YGGCCR	5 cut(s)	294, 777, 786, 2315, 2584
Eam1104I	CTCTTC	5 cut(s)	82, 594, 1959, 2232, 3013
EarI	CTCTTC	5 cut(s)	82, 594, 1959, 2232, 3013
Eco130I	CCWWGG	2 cut(s)	874, 2398
Eco24I	GRGCYC	2 cut(s)	1844, 1971
Eco47I	GGWCC	9 cut(s)	420, 430, 444, 584, 1028, 1097, 1169, 1387, 1643
Eco47III	AGCGCT	1 cut(s)	554
Eco57I	CTGAAG	3 cut(s)	404, 1620, 2937
Eco81I	CCTNAGG	1 cut(s)	2676
Eco88I	CYCGRG	2 cut(s)	548, 1260
Eco91I	GGTNACC	4 cut(s)	475, 494, 1298, 1604
EcoNI	CCTNNNNNAGG	1 cut(s)	1614
EcoO109I	RGGNCCY	1 cut(s)	584
EcoO65I	GGTNACC	4 cut(s)	475, 494, 1298, 1604
EcoRII	CCWGG	4 cut(s)	479, 658, 1243, 2559
EcoT14I	CCWWGG	2 cut(s)	874, 2398
EcoT38I	GRGCYC	2 cut(s)	1844, 1971
ErhI	CCWWGG	2 cut(s)	874, 2398
Esp3I	CGTCTC	2 cut(s)	1653, 2344
FalI	AAGNNNNNCTT	2 cut(s)	501, 533
FaqI	GGGAC	4 cut(s)	1435, 2095, 2444, 2560
FauI	CCCGC	2 cut(s)	895, 1874
FbaI	TGATCA	1 cut(s)	2905
Fnu4HI	GCNGC	8 cut(s)	366, 457, 756, 1007, 1517, 2501, 2587, 2954
FokI	GGATG	5 cut(s)	429, 1848, 2258, 2302, 3038
FriOI	GRGCYC	2 cut(s)	1844, 1971
Fsp4HI	GCNGC	8 cut(s)	366, 457, 756, 1007, 1517, 2501, 2587, 2954
FspBI	CTAG	4 cut(s)	41, 1133, 1698, 1917
GlaI	GCGC	1 cut(s)	554
GluI	GCNGC	8 cut(s)	366, 457, 756, 1007, 1517, 2501, 2587, 2954
GsaI	CCCAGC	5 cut(s)	282, 312, 1574, 1962, 3030
GsuI	CTGGAG	1 cut(s)	2493
HaeII	RGCGCY	1 cut(s)	556
HgaI	GACGC	1 cut(s)	1428
HhaI	GCGC	1 cut(s)	555
Hin6I	GCGC	1 cut(s)	553
HinP1I	GCGC	1 cut(s)	553
HincII	GTYRAC	1 cut(s)	847
HindII	GTYRAC	1 cut(s)	847
HindIII	AAGCTT	1 cut(s)	48
HpaI	GTTAAC	1 cut(s)	847
HphI	GGTGA	7 cut(s)	487, 488, 674, 1129, 1259, 2017, 2635
Hpy166II	GTNNAC	4 cut(s)	648, 847, 1092, 1934
Hpy8I	GTNNAC	4 cut(s)	648, 847, 1092, 1934
Hpy99I	CGWCG	1 cut(s)	2111
HpyCH4III	ACNGT	8 cut(s)	1387, 1531, 1647, 1694, 1906, 2086, 2797, 2863
HpyCH4IV	ACGT	1 cut(s)	1271
HpyF10VI	GCNNNNNNNGC	7 cut(s)	559, 785, 931, 1508, 1513, 2480, 2807
HpySE526I	ACGT	1 cut(s)	1271
HspAI	GCGC	1 cut(s)	553
Kpn2I	TCCGGA	2 cut(s)	2025, 2706
KroI	GCCGGC	1 cut(s)	1177
KroNI	GCCGGC	1 cut(s)	1179
Ksp22I	TGATCA	1 cut(s)	2905
KspAI	GTTAAC	1 cut(s)	847
Kzo9I	GATC	5 cut(s)	483, 1877, 2749, 2761, 2905
LguI	GCTCTTC	1 cut(s)	2232
LmnI	GCTCC	6 cut(s)	1065, 1504, 2028, 2512, 2635, 2887
Lsp1109I	GCAGC	5 cut(s)	352, 443, 767, 993, 1503
LweI	GCATC	5 cut(s)	352, 767, 2224, 2280, 3060
MaeI	CTAG	4 cut(s)	41, 1133, 1698, 1917
MaeII	ACGT	1 cut(s)	1271
MalI	GATC	5 cut(s)	485, 1879, 2751, 2763, 2907
MboI	GATC	5 cut(s)	483, 1877, 2749, 2761, 2905
MfeI	CAATTG	4 cut(s)	1281, 2361, 2526, 2757
MflI	RGATCY	1 cut(s)	483
MhlI	GDGCHC	4 cut(s)	1844, 1936, 1971, 2025
MlsI	TGGCCA	2 cut(s)	296, 2317
MluI	ACGCGT	1 cut(s)	1017
MluNI	TGGCCA	2 cut(s)	296, 2317
MlyI	GAGTC	7 cut(s)	847, 979, 1249, 1743, 2723, 2872, 3089
MmeI	TCCRAC	2 cut(s)	447, 511
Mox20I	TGGCCA	2 cut(s)	296, 2317
MroI	TCCGGA	2 cut(s)	2025, 2706
MroNI	GCCGGC	1 cut(s)	1177
MroXI	GAANNNNTTC	3 cut(s)	1423, 1693, 2259
MscI	TGGCCA	2 cut(s)	296, 2317
MslI	CAYNNNNRTG	3 cut(s)	968, 2341, 2820
Msp20I	TGGCCA	2 cut(s)	296, 2317
MspA1I	CMGCKG	2 cut(s)	1502, 1640
MspCI	CTTAAG	2 cut(s)	1124, 2963
MspR9I	CCNGG	8 cut(s)	428, 481, 660, 901, 1191, 1245, 2561, 2647
MunI	CAATTG	4 cut(s)	1281, 2361, 2526, 2757
Mva1269I	GAATGC	1 cut(s)	1009
MvaI	CCWGG	4 cut(s)	481, 660, 1245, 2561
MvnI	CGCG	4 cut(s)	890, 1019, 1439, 2589
MwoI	GCNNNNNNNGC	7 cut(s)	559, 785, 931, 1508, 1513, 2480, 2807
NaeI	GCCGGC	1 cut(s)	1179
NciI	CCSGG	4 cut(s)	428, 901, 1191, 2647
NcoI	CCATGG	1 cut(s)	2398
NdeII	GATC	5 cut(s)	483, 1877, 2749, 2761, 2905
NgoMIV	GCCGGC	1 cut(s)	1177
NlaIV	GGNNCC	5 cut(s)	432, 446, 485, 2565, 2705
NmuCI	GTSAC	7 cut(s)	475, 494, 1128, 1253, 2032, 2207, 2590
NspI	RCATGY	2 cut(s)	10, 2689
NspV	TTCGAA	1 cut(s)	1013
PaeI	GCATGC	2 cut(s)	10, 2689
PaeR7I	CTCGAG	2 cut(s)	548, 1260
PciSI	GCTCTTC	1 cut(s)	2232
PcsI	WCGNNNNNNNCGW	1 cut(s)	420
PctI	GAATGC	1 cut(s)	1009
PdiI	GCCGGC	1 cut(s)	1179
PdmI	GAANNNNTTC	3 cut(s)	1423, 1693, 2259
PfeI	GAWTC	4 cut(s)	163, 407, 1495, 3002
PflMI	CCANNNNNTGG	1 cut(s)	2404
PkrI	GCNGC	8 cut(s)	367, 458, 757, 1008, 1518, 2502, 2588, 2955
PleI	GAGTC	7 cut(s)	846, 979, 1248, 1742, 2723, 2872, 3088
PpsI	GAGTC	7 cut(s)	846, 979, 1248, 1742, 2723, 2872, 3088
PpuMI	RGGWCCY	1 cut(s)	584
PshBI	ATTAAT	1 cut(s)	1778
Psp5II	RGGWCCY	1 cut(s)	584
Psp6I	CCWGG	4 cut(s)	479, 658, 1243, 2559
PspEI	GGTNACC	4 cut(s)	475, 494, 1298, 1604
PspFI	CCCAGC	5 cut(s)	278, 308, 1570, 1958, 3026
PspGI	CCWGG	4 cut(s)	479, 658, 1243, 2559
PspN4I	GGNNCC	5 cut(s)	432, 446, 485, 2565, 2705
PspPPI	RGGWCCY	1 cut(s)	584
PspXI	VCTCGAGB	2 cut(s)	548, 1260
PstI	CTGCAG	1 cut(s)	3097
PstNI	CAGNNNCTG	1 cut(s)	2582
PsuI	RGATCY	1 cut(s)	483
PvuII	CAGCTG	1 cut(s)	1640
RsaI	GTAC	5 cut(s)	191, 514, 1633, 2303, 2794
RsaNI	GTAC	5 cut(s)	190, 513, 1632, 2302, 2793
RseI	CAYNNNNRTG	3 cut(s)	968, 2341, 2820
SapI	GCTCTTC	1 cut(s)	2232
SatI	GCNGC	8 cut(s)	366, 457, 756, 1007, 1517, 2501, 2587, 2954
Sau3AI	GATC	5 cut(s)	483, 1877, 2749, 2761, 2905
ScaI	AGTACT	2 cut(s)	1633, 2794
SchI	GAGTC	7 cut(s)	847, 979, 1249, 1743, 2723, 2872, 3089
ScrFI	CCNGG	8 cut(s)	428, 481, 660, 901, 1191, 1245, 2561, 2647
SduI	GDGCHC	4 cut(s)	1844, 1936, 1971, 2025
SfaNI	GCATC	5 cut(s)	352, 767, 2224, 2280, 3060
SfcI	CTRYAG	1 cut(s)	3093
SfiI	GGCCNNNNNGGCC	1 cut(s)	785
Sfr274I	CTCGAG	2 cut(s)	548, 1260
SfuI	TTCGAA	1 cut(s)	1013
SinI	GGWCC	9 cut(s)	420, 430, 444, 584, 1028, 1097, 1169, 1387, 1643
SlaI	CTCGAG	2 cut(s)	548, 1260
SmiMI	CAYNNNNRTG	3 cut(s)	968, 2341, 2820
SmlI	CTYRAG	7 cut(s)	548, 746, 1069, 1124, 1260, 2283, 2963
SmoI	CTYRAG	7 cut(s)	548, 746, 1069, 1124, 1260, 2283, 2963
SphI	GCATGC	2 cut(s)	10, 2689
SsiI	CCGC	8 cut(s)	888, 1063, 1199, 1502, 1867, 2500, 2587, 2954
SspI	AATATT	1 cut(s)	2449
SspMI	CTAG	4 cut(s)	41, 1133, 1698, 1917
StyD4I	CCNGG	8 cut(s)	426, 479, 658, 899, 1189, 1243, 2559, 2645
StyI	CCWWGG	2 cut(s)	874, 2398
TaaI	ACNGT	8 cut(s)	1387, 1531, 1647, 1694, 1906, 2086, 2797, 2863
TaiI	ACGT	1 cut(s)	1274
TaqI	TCGA	4 cut(s)	549, 1013, 1261, 2876
TaqII	GACCGA	2 cut(s)	1070, 2480
TatI	WGTACW	3 cut(s)	189, 1631, 2792
TauI	GCSGC	3 cut(s)	2503, 2589, 2956
TfiI	GAWTC	4 cut(s)	163, 407, 1495, 3002
TscAI	CASTG	8 cut(s)	1113, 1299, 1941, 1969, 2091, 2343, 2791, 2866
TseFI	GTSAC	7 cut(s)	475, 494, 1128, 1253, 2032, 2207, 2590
TseI	GCWGC	5 cut(s)	365, 456, 755, 1006, 1516
Tsp45I	GTSAC	7 cut(s)	475, 494, 1128, 1253, 2032, 2207, 2590
TspDTI	ATGAA	9 cut(s)	275, 306, 1850, 1863, 1910, 1989, 2268, 2707, 3003
TspGWI	ACGGA	1 cut(s)	2124
TspRI	CASTG	8 cut(s)	1113, 1299, 1941, 1969, 2091, 2343, 2791, 2866
Van91I	CCANNNNNTGG	1 cut(s)	2404
Vha464I	CTTAAG	2 cut(s)	1124, 2963
VneI	GTGCAC	1 cut(s)	1932
VpaK11BI	GGWCC	9 cut(s)	420, 430, 444, 584, 1028, 1097, 1169, 1387, 1643
VspI	ATTAAT	1 cut(s)	1778
XagI	CCTNNNNNAGG	1 cut(s)	1614
XapI	RAATTY	5 cut(s)	732, 909, 1144, 1654, 2171
XbaI	TCTAGA	1 cut(s)	1697
XceI	RCATGY	2 cut(s)	10, 2689
XcmI	CCANNNNNNNNNTGG	2 cut(s)	487, 818
XhoI	CTCGAG	2 cut(s)	548, 1260
XmnI	GAANNNNTTC	3 cut(s)	1423, 1693, 2259
XspI	CTAG	4 cut(s)	41, 1133, 1698, 1917
ZrmI	AGTACT	2 cut(s)	1633, 2794

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.