Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0012762

Physical Location & Seq

Genomic Coordinates Reverse (-)

24069085 .. 24069899

Gene Structure 815 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0253800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGGCACAAGATGAGAGGCTTAGAGCCACTTCTGAGATCCTAAACAGTATGAAGATCATTAAGTTACAATCCTGGGAAGAGAAATTCAAAAACTCGGTCAATTCCCTTCGAGAAAGAGAATTCAAATGGTTGTCTGAGGGACAATTTAGGAAGGCTTATGGAACTTTACTCTACTGGATGTCACCAACCATGATCTCTTCTGTTGTTTTTCTAGGGTGTATCCTTTTCAAAAGTGTCCCTCTGAATGCAAGTACTATATTCACAGTTTTAGCTTCACTAAGGAGCATGGGAGAACCTGTGAGAATGATACCAGAGGCTCTTTCAGTAATGATCCAAGTCAAGGTCTCATTTGATCGGCTAAATGCTTTTTTGCTTGATGATGAGTTGAAAGATGATGAGATAAGGAAGCTCCCATCACCAAATTCAGATGAGAGCTTGAGAATACAAAAAGGCATTTTCAGTTGGTATCCTGAATCAGCAATTCAAACTCTGAAAGAAGTGAACCTAGAAGCAAAATGTGAGCAGAAAATTGCAGTTTGTGGACCAGTTGGAGCTGGAAAATCATCACTTTTATTTGCTATACTTGGAGAGATGCCCAAAATTTCAGGAGCTGTCGATGTATTTGGAACCATAGCCTATGTTTCTCAAACTTCTTGGATACAAAGTGGGATAGTTCGTGATAACATACTCTATGGGAAGCCAATTAATGGACAAGAACAAATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005576 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_4 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

241

Amino Acids

27.07

Weight (kDa)

7.62

Isoelectric Point (pI)

39.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_tran	PF00005	164 - 210	1.1e-06	ABC transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012762)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66150
fragaria_vesca	FvH4_1g29920
malus_domestica	MD09G1266700.v1.1 MD17G1262700.v1.1
prunus_persica	Prupe.3G164300_v2.0.a1
pyrus_communis	pycom09g17970 pycom17g26270
rosa_chinensis	RchiOBHm_Chr3g0492431
rosa_laevigata	RLG00000022769
rosa_multiflora	Rmu_sc0003156.1_g000009 Rmu_sc0027181.1_g000001
rosa_roxburghii	Rroxscaffold_6G00392320
rosa_rugosa	Rorug03G0253800
rosa_samantha	Rh3AG304000 Rh3BG339900 Rh3CG337100 Rh3DG339100
rosa_wichuraiana	Rw3G026800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	707
AclWI	GGATC	2 cut(s)	31, 325
AcsI	RAATTY	4 cut(s)	83, 119, 421, 600
AfaI	GTAC	1 cut(s)	253
AfiI	CCNNNNNNNGG	2 cut(s)	340, 707
AgsI	TTSAA	5 cut(s)	88, 124, 229, 388, 485
AjnI	CCWGG	1 cut(s)	71
AluBI	AGCT	5 cut(s)	272, 409, 435, 554, 611
AluI	AGCT	5 cut(s)	272, 409, 435, 554, 611
Alw26I	GTCTC	1 cut(s)	349
AlwI	GGATC	2 cut(s)	31, 325
AlwNI	CAGNNNCTG	1 cut(s)	611
ApoI	RAATTY	4 cut(s)	83, 119, 421, 600
ArsI	GACNNNNNNTTYG	2 cut(s)	81, 113
AseI	ATTAAT	1 cut(s)	705
AspS9I	GGNCC	1 cut(s)	542
AsuHPI	GGTGA	2 cut(s)	174, 408
AvaII	GGWCC	1 cut(s)	542
BccI	CCATC	1 cut(s)	421
BciT130I	CCWGG	1 cut(s)	73
BciVI	GTATCC	3 cut(s)	230, 477, 651
BcoDI	GTCTC	1 cut(s)	349
BfaI	CTAG	2 cut(s)	212, 506
BfuI	GTATCC	3 cut(s)	230, 477, 651
BmcAI	AGTACT	1 cut(s)	253
Bme1390I	CCNGG	1 cut(s)	73
Bme18I	GGWCC	1 cut(s)	542
BmgT120I	GGNCC	1 cut(s)	542
BmiI	GGNNCC	1 cut(s)	628
BmrFI	CCNGG	1 cut(s)	73
BmsI	GCATC	1 cut(s)	582
BpuEI	CTTGAG	1 cut(s)	457
BsaI	GGTCTC	1 cut(s)	349
BsaJI	CCNNGG	1 cut(s)	72
BsaXI	ACNNNNNCTCC	2 cut(s)	282, 312
Bsc4I	CCNNNNNNNGG	2 cut(s)	340, 707
Bse1I	ACTGG	2 cut(s)	179, 545
BseBI	CCWGG	1 cut(s)	73
BseDI	CCNNGG	1 cut(s)	72
BseGI	GGATG	1 cut(s)	183
BseLI	CCNNNNNNNGG	2 cut(s)	340, 707
BseMII	CTCAG	2 cut(s)	24, 126
BseNI	ACTGG	2 cut(s)	179, 545
BslFI	GGGAC	2 cut(s)	153, 221
BslI	CCNNNNNNNGG	2 cut(s)	340, 707
BsmAI	GTCTC	1 cut(s)	349
BsmFI	GGGAC	2 cut(s)	153, 221
BsmI	GAATGC	1 cut(s)	250
Bso31I	GGTCTC	1 cut(s)	349
Bsp143I	GATC	5 cut(s)	36, 54, 192, 330, 352
BspCNI	CTCAG	2 cut(s)	25, 127
BspLI	GGNNCC	1 cut(s)	628
BspPI	GGATC	2 cut(s)	31, 325
BspTNI	GGTCTC	1 cut(s)	349
BsrI	ACTGG	2 cut(s)	179, 545
BssECI	CCNNGG	1 cut(s)	72
BssMI	GATC	5 cut(s)	36, 54, 192, 330, 352
Bst2UI	CCWGG	1 cut(s)	73
Bst4CI	ACNGT	2 cut(s)	47, 265
Bst6I	CTCTTC	2 cut(s)	72, 202
BstDEI	CTNAG	4 cut(s)	20, 33, 135, 278
BstF5I	GGATG	1 cut(s)	183
BstKTI	GATC	5 cut(s)	39, 57, 195, 333, 355
BstMAI	GTCTC	1 cut(s)	349
BstMBI	GATC	5 cut(s)	36, 54, 192, 330, 352
BstNI	CCWGG	1 cut(s)	73
BstSCI	CCNGG	1 cut(s)	71
BstX2I	RGATCY	1 cut(s)	36
BstYI	RGATCY	1 cut(s)	36
BsuI	GTATCC	3 cut(s)	230, 477, 651
BtsCI	GGATG	1 cut(s)	183
CaiI	CAGNNNCTG	1 cut(s)	611
Cfr13I	GGNCC	1 cut(s)	542
Csp6I	GTAC	1 cut(s)	252
CviAII	CATG	2 cut(s)	190, 286
CviQI	GTAC	1 cut(s)	252
DdeI	CTNAG	4 cut(s)	20, 33, 135, 278
DpnI	GATC	5 cut(s)	38, 56, 194, 332, 354
DpnII	GATC	5 cut(s)	36, 54, 192, 330, 352
Eam1104I	CTCTTC	2 cut(s)	72, 202
EarI	CTCTTC	2 cut(s)	72, 202
Eco31I	GGTCTC	1 cut(s)	349
Eco47I	GGWCC	1 cut(s)	542
EcoRI	GAATTC	1 cut(s)	119
EcoRII	CCWGG	1 cut(s)	71
FaeI	CATG	2 cut(s)	193, 289
FaqI	GGGAC	2 cut(s)	153, 221
FatI	CATG	2 cut(s)	189, 285
FokI	GGATG	1 cut(s)	190
FspBI	CTAG	2 cut(s)	212, 506
Hin1II	CATG	2 cut(s)	193, 289
HinfI	GANTC	1 cut(s)	473
HphI	GGTGA	2 cut(s)	174, 408
Hpy166II	GTNNAC	2 cut(s)	502, 542
Hpy188I	TCNGA	5 cut(s)	34, 136, 243, 427, 492
Hpy188III	TCNNGA	4 cut(s)	110, 470, 606, 677
Hpy8I	GTNNAC	2 cut(s)	502, 542
HpyAV	CCTTC	2 cut(s)	116, 145
HpyCH4III	ACNGT	2 cut(s)	47, 265
HpyCH4V	TGCA	2 cut(s)	248, 533
HpyF3I	CTNAG	4 cut(s)	20, 33, 135, 278
Hsp92II	CATG	2 cut(s)	193, 289
Kzo9I	GATC	5 cut(s)	36, 54, 192, 330, 352
LmnI	GCTCC	4 cut(s)	282, 414, 551, 608
LpnPI	CCDG	9 cut(s)	58, 85, 160, 309, 324, 483, 540, 558, 591
LweI	GCATC	1 cut(s)	582
MaeI	CTAG	2 cut(s)	212, 506
MaeIII	GTNAC	2 cut(s)	63, 180
MalI	GATC	5 cut(s)	38, 56, 194, 332, 354
MboI	GATC	5 cut(s)	36, 54, 192, 330, 352
MboII	GAAGA	3 cut(s)	64, 89, 189
MflI	RGATCY	1 cut(s)	36
MluCI	AATT	9 cut(s)	83, 100, 119, 143, 421, 480, 528, 600, 702
MmeI	TCCRAC	1 cut(s)	529
MnlI	CCTC	4 cut(s)	9, 130, 249, 307
MseI	TTAA	2 cut(s)	60, 705
MspR9I	CCNGG	1 cut(s)	73
Mva1269I	GAATGC	1 cut(s)	250
MvaI	CCWGG	1 cut(s)	73
NdeII	GATC	5 cut(s)	36, 54, 192, 330, 352
NlaIII	CATG	2 cut(s)	193, 289
NlaIV	GGNNCC	1 cut(s)	628
NmuCI	GTSAC	1 cut(s)	180
PctI	GAATGC	1 cut(s)	250
PfeI	GAWTC	1 cut(s)	473
PflMI	CCANNNNNTGG	1 cut(s)	707
PshBI	ATTAAT	1 cut(s)	705
Psp6I	CCWGG	1 cut(s)	71
PspGI	CCWGG	1 cut(s)	71
PspN4I	GGNNCC	1 cut(s)	628
PspPI	GGNCC	1 cut(s)	542
PstNI	CAGNNNCTG	1 cut(s)	611
PsuI	RGATCY	1 cut(s)	36
RsaI	GTAC	1 cut(s)	253
RsaNI	GTAC	1 cut(s)	252
SaqAI	TTAA	2 cut(s)	60, 705
Sau3AI	GATC	5 cut(s)	36, 54, 192, 330, 352
Sau96I	GGNCC	1 cut(s)	542
ScaI	AGTACT	1 cut(s)	253
ScrFI	CCNGG	1 cut(s)	73
SetI	ASST	8 cut(s)	274, 298, 345, 411, 437, 507, 556, 613
SfaNI	GCATC	1 cut(s)	582
SinI	GGWCC	1 cut(s)	542
SmlI	CTYRAG	1 cut(s)	436
SmoI	CTYRAG	1 cut(s)	436
Sse9I	AATT	9 cut(s)	83, 100, 119, 143, 421, 480, 528, 600, 702
SspMI	CTAG	2 cut(s)	212, 506
StyD4I	CCNGG	1 cut(s)	71
TaaI	ACNGT	2 cut(s)	47, 265
TaqI	TCGA	2 cut(s)	109, 615
TaqII	GACCGA	1 cut(s)	85
TasI	AATT	9 cut(s)	83, 100, 119, 143, 421, 480, 528, 600, 702
TatI	WGTACW	1 cut(s)	251
TfiI	GAWTC	1 cut(s)	473
Tru1I	TTAA	2 cut(s)	60, 705
Tru9I	TTAA	2 cut(s)	60, 705
TseFI	GTSAC	1 cut(s)	180
Tsp45I	GTSAC	1 cut(s)	180
TspDTI	ATGAA	1 cut(s)	65
Van91I	CCANNNNNTGG	1 cut(s)	707
VpaK11BI	GGWCC	1 cut(s)	542
VspI	ATTAAT	1 cut(s)	705
XapI	RAATTY	4 cut(s)	83, 119, 421, 600
XspI	CTAG	2 cut(s)	212, 506
ZrmI	AGTACT	1 cut(s)	253

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.