MD10G1001800.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0016400
Physical Location & Seq
Reverse (-)
500759 .. 503240
2482 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1001800.v1.1.491

Sequence Viewer

Length: 372 bp
ATGCGGCCTACTAAACAATCACGGCTTGCAGAGGCAGAAGAATCAAAGGCGGCAGAGGCACAAGGATCGAAGGCGGCTGAGGCACAACAACAAAAGGTGGCTGAGGCACAGGGACCAAAGAAGTTTGCTTTTGATTATGCTATACAAACCCCAAAGTTCAGGTACTGTCGCATTTGTATGAAGAATGATCACAGTGCACCACTTTGCCCGTACGGGAGATATTGCTCACCAGATGTAACTGTTGGCCCAGATGCTGCAATAGTCTGTACGTGTTGCCATGGTGATCCAAAAACAGCGCACCCTGATGTCGCTGATGTGGAAATGGTAACAAGAGCTGTACTCAAGAGTTCTCTGCCACGATCAAGGAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

124

Amino Acids

13.47

Weight (kDa)

8.88

Isoelectric Point (pI)

44.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016400)

Species Orthologous Gene IDs
malus_domestica MD10G1001800.v1.1
pyrus_communis pycom10g00170
rosa_laevigata RLG00000007703 RLG00000007704
rosa_multiflora Rmu_sc0001162.1_g000001
rosa_rugosa Rorug04G0169600 Rorug04G0175900
rosa_samantha Rh4AG230300 Rh4AG234900 Rh4BG233200 Rh4CG249800 Rh4DG229000 Rh4DG233800
rosa_wichuraiana Rw4G019940 Rw4G020350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 4, 50, 74
AclWI GGATC 2 cut(s) 73, 278
AfaI GTAC 4 cut(s) 164, 212, 268, 339
AflIII ACRYGT 1 cut(s) 269
AluBI AGCT 1 cut(s) 335
AluI AGCT 1 cut(s) 335
Alw21I GWGCWC 1 cut(s) 199
Alw44I GTGCAC 1 cut(s) 195
AlwI GGATC 2 cut(s) 73, 278
AlwNI CAGNNNCTG 2 cut(s) 165, 254
AoxI GGCC 2 cut(s) 5, 244
ApaLI GTGCAC 1 cut(s) 195
ApeKI GCWGC 1 cut(s) 254
AspLEI GCGC 1 cut(s) 298
AspS9I GGNCC 2 cut(s) 113, 245
AsuHPI GGTGA 2 cut(s) 219, 293
AvaII GGWCC 1 cut(s) 113
BaeGI GKGCMC 1 cut(s) 199
Bbv12I GWGCWC 1 cut(s) 199
BbvCI CCTCAGC 2 cut(s) 78, 102
BbvI GCAGC 1 cut(s) 241
BceAI ACGGC 1 cut(s) 38
BcgI CGANNNNNNTGC 2 cut(s) 48, 82
BclI TGATCA 1 cut(s) 187
BisI GCNGC 4 cut(s) 5, 51, 75, 255
BlsI GCNGC 4 cut(s) 6, 52, 76, 256
Bme18I GGWCC 1 cut(s) 113
BmgT120I GGNCC 2 cut(s) 113, 245
BmiI GGNNCC 1 cut(s) 114
BmsI GCATC 1 cut(s) 241
BplI GAGNNNNNCTC 2 cut(s) 324, 356
Bpu10I CCTNAGC 2 cut(s) 78, 102
BpuEI CTTGAG 1 cut(s) 326
BsaAI YACGTR 1 cut(s) 270
BsaJI CCNNGG 1 cut(s) 277
BseDI CCNNGG 1 cut(s) 277
BseMII CTCAG 2 cut(s) 69, 93
BseSI GKGCMC 1 cut(s) 199
BseXI GCAGC 1 cut(s) 241
BshFI GGCC 2 cut(s) 7, 246
BsiHKAI GWGCWC 1 cut(s) 199
BsiWI CGTACG 1 cut(s) 210
BslFI GGGAC 1 cut(s) 126
BsmFI GGGAC 1 cut(s) 126
BsnI GGCC 2 cut(s) 7, 246
Bsp1286I GDGCHC 1 cut(s) 199
Bsp143I GATC 4 cut(s) 65, 187, 283, 359
Bsp19I CCATGG 1 cut(s) 277
BspACI CCGC 3 cut(s) 4, 50, 74
BspANI GGCC 2 cut(s) 7, 246
BspCNI CTCAG 2 cut(s) 70, 94
BspLI GGNNCC 1 cut(s) 114
BspPI GGATC 2 cut(s) 73, 278
BssECI CCNNGG 1 cut(s) 277
BssMI GATC 4 cut(s) 65, 187, 283, 359
BssT1I CCWWGG 1 cut(s) 277
Bst4CI ACNGT 3 cut(s) 167, 194, 241
BstBAI YACGTR 1 cut(s) 270
BstC8I GCNNGC 1 cut(s) 27
BstDEI CTNAG 2 cut(s) 78, 102
BstDSI CCRYGG 1 cut(s) 277
BstHHI GCGC 1 cut(s) 298
BstKTI GATC 4 cut(s) 68, 190, 286, 362
BstMBI GATC 4 cut(s) 65, 187, 283, 359
BstMWI GCNNNNNNNGC 2 cut(s) 56, 80
BstSLI GKGCMC 1 cut(s) 199
BstV1I GCAGC 1 cut(s) 241
BsuRI GGCC 2 cut(s) 7, 246
BtgI CCRYGG 1 cut(s) 277
BtsIMutI CAGTG 1 cut(s) 199
Cac8I GCNNGC 1 cut(s) 27
CaiI CAGNNNCTG 2 cut(s) 165, 254
CfoI GCGC 1 cut(s) 298
Cfr13I GGNCC 2 cut(s) 113, 245
Csp6I GTAC 4 cut(s) 163, 211, 267, 338
CviAII CATG 1 cut(s) 278
CviJI RGCY 6 cut(s) 7, 25, 77, 101, 246, 335
CviKI_1 RGCY 6 cut(s) 7, 25, 77, 101, 246, 335
CviQI GTAC 4 cut(s) 163, 211, 267, 338
DdeI CTNAG 2 cut(s) 78, 102
DpnI GATC 4 cut(s) 67, 189, 285, 361
DpnII GATC 4 cut(s) 65, 187, 283, 359
Eco130I CCWWGG 1 cut(s) 277
Eco47I GGWCC 1 cut(s) 113
EcoT14I CCWWGG 1 cut(s) 277
ErhI CCWWGG 1 cut(s) 277
FaeI CATG 1 cut(s) 281
FaiI YATR 4 cut(s) 138, 143, 179, 279
FaqI GGGAC 1 cut(s) 126
FatI CATG 1 cut(s) 277
FbaI TGATCA 1 cut(s) 187
Fnu4HI GCNGC 4 cut(s) 5, 51, 75, 255
Fsp4HI GCNGC 4 cut(s) 5, 51, 75, 255
GlaI GCGC 1 cut(s) 297
GluI GCNGC 4 cut(s) 5, 51, 75, 255
HaeIII GGCC 2 cut(s) 7, 246
HhaI GCGC 1 cut(s) 298
Hin1II CATG 1 cut(s) 281
Hin6I GCGC 1 cut(s) 296
HinP1I GCGC 1 cut(s) 296
HinfI GANTC 1 cut(s) 41
HphI GGTGA 2 cut(s) 219, 293
Hpy166II GTNNAC 1 cut(s) 197
Hpy188III TCNNGA 1 cut(s) 343
Hpy8I GTNNAC 1 cut(s) 197
HpyAV CCTTC 1 cut(s) 64
HpyCH4III ACNGT 3 cut(s) 167, 194, 241
HpyCH4IV ACGT 1 cut(s) 269
HpyCH4V TGCA 3 cut(s) 29, 197, 257
HpyF10VI GCNNNNNNNGC 2 cut(s) 56, 80
HpyF3I CTNAG 2 cut(s) 78, 102
HpySE526I ACGT 1 cut(s) 269
Hsp92II CATG 1 cut(s) 281
HspAI GCGC 1 cut(s) 296
Ksp22I TGATCA 1 cut(s) 187
Kzo9I GATC 4 cut(s) 65, 187, 283, 359
LpnPI CCDG 5 cut(s) 95, 145, 243, 261, 315
Lsp1109I GCAGC 1 cut(s) 241
LweI GCATC 1 cut(s) 241
MaeII ACGT 1 cut(s) 269
MaeIII GTNAC 2 cut(s) 235, 325
MalI GATC 4 cut(s) 67, 189, 285, 361
MboI GATC 4 cut(s) 65, 187, 283, 359
MboII GAAGA 2 cut(s) 50, 193
MhlI GDGCHC 1 cut(s) 199
MnlI CCTC 5 cut(s) 25, 49, 73, 97, 360
MslI CAYNNNNRTG 2 cut(s) 176, 303
MwoI GCNNNNNNNGC 2 cut(s) 56, 80
NcoI CCATGG 1 cut(s) 277
NdeII GATC 4 cut(s) 65, 187, 283, 359
NlaIII CATG 1 cut(s) 281
NlaIV GGNNCC 1 cut(s) 114
PfeI GAWTC 1 cut(s) 41
Pfl23II CGTACG 1 cut(s) 210
PkrI GCNGC 4 cut(s) 6, 52, 76, 256
Ppu21I YACGTR 1 cut(s) 270
PspLI CGTACG 1 cut(s) 210
PspN4I GGNNCC 1 cut(s) 114
PspPI GGNCC 2 cut(s) 113, 245
PstNI CAGNNNCTG 2 cut(s) 165, 254
RsaI GTAC 4 cut(s) 164, 212, 268, 339
RsaNI GTAC 4 cut(s) 163, 211, 267, 338
RseI CAYNNNNRTG 2 cut(s) 176, 303
SatI GCNGC 4 cut(s) 5, 51, 75, 255
Sau3AI GATC 4 cut(s) 65, 187, 283, 359
Sau96I GGNCC 2 cut(s) 113, 245
SduI GDGCHC 1 cut(s) 199
SetI ASST 5 cut(s) 99, 164, 272, 337, 371
SfaNI GCATC 1 cut(s) 241
SinI GGWCC 1 cut(s) 113
SmiMI CAYNNNNRTG 2 cut(s) 176, 303
SmlI CTYRAG 1 cut(s) 341
SmoI CTYRAG 1 cut(s) 341
SsiI CCGC 3 cut(s) 4, 50, 74
StyI CCWWGG 1 cut(s) 277
TaaI ACNGT 3 cut(s) 167, 194, 241
TaiI ACGT 1 cut(s) 272
TaqI TCGA 1 cut(s) 68
TatI WGTACW 1 cut(s) 337
TauI GCSGC 3 cut(s) 7, 53, 77
TfiI GAWTC 1 cut(s) 41
TscAI CASTG 1 cut(s) 199
TseI GCWGC 1 cut(s) 254
TspDTI ATGAA 1 cut(s) 194
TspRI CASTG 1 cut(s) 199
VneI GTGCAC 1 cut(s) 195
VpaK11BI GGWCC 1 cut(s) 113
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.