RLG00000007704

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0016400
Physical Location & Seq
Reverse (-)
20071834 .. 20072500
667 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000007704

Sequence Viewer

Length: 369 bp
ATGATCCGCATGAAACCTGGGAAGCTGAAACCAATGGTGCTGGTCTGTGATCCGTTAAAGAACTGGGAGCAAAAATGGGTAACGACTGTGGAGAACCCGGAAAAACCAGGACAAATCCTATGGGTGAAATACATGGAAGGGCTGTCGGAGGGCGATTTAGATGTACCTCCGTTGAGTGAGAAGTTGAAAGAAACGAGAAAAACCGCTGCTCGGTTGTTTTCACCTCGTGGGACCAAAACCGACGAGTGGATTTGTGGGGATTGTTATCAGTGGGATGACCACTGGCCTCCAACGTGCCCATACACGGACACGGATGATCCTACAGTACCCCACGCCAAAACAGCAAAACTCATACAGTCTAAGATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

123

Amino Acids

14.09

Weight (kDa)

6.72

Isoelectric Point (pI)

26.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016400)

Species Orthologous Gene IDs
malus_domestica MD10G1001800.v1.1
pyrus_communis pycom10g00170
rosa_laevigata RLG00000007703 RLG00000007704
rosa_multiflora Rmu_sc0001162.1_g000001
rosa_rugosa Rorug04G0169600 Rorug04G0175900
rosa_samantha Rh4AG230300 Rh4AG234900 Rh4BG233200 Rh4CG249800 Rh4DG229000 Rh4DG233800
rosa_wichuraiana Rw4G019940 Rw4G020350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 7, 204
AclWI GGATC 2 cut(s) 44, 311
AdeI CACNNNGTG 1 cut(s) 227
AfaI GTAC 2 cut(s) 165, 327
AfiI CCNNNNNNNGG 3 cut(s) 210, 246, 304
AgsI TTSAA 1 cut(s) 187
AjnI CCWGG 2 cut(s) 16, 106
AluBI AGCT 1 cut(s) 25
AluI AGCT 1 cut(s) 25
AlwI GGATC 2 cut(s) 44, 311
AoxI GGCC 1 cut(s) 284
ApeKI GCWGC 1 cut(s) 206
AspS9I GGNCC 1 cut(s) 231
AsuC2I CCSGG 1 cut(s) 98
AsuHPI GGTGA 2 cut(s) 136, 213
AvaII GGWCC 1 cut(s) 231
BaeGI GKGCMC 1 cut(s) 299
BauI CACGAG 1 cut(s) 225
BbvI GCAGC 1 cut(s) 193
BciT130I CCWGG 2 cut(s) 18, 108
BcnI CCSGG 1 cut(s) 98
BfmI CTRYAG 1 cut(s) 321
BisI GCNGC 1 cut(s) 207
BlsI GCNGC 1 cut(s) 208
Bme1390I CCNGG 3 cut(s) 18, 98, 108
Bme18I GGWCC 1 cut(s) 231
BmgT120I GGNCC 1 cut(s) 231
BmiI GGNNCC 1 cut(s) 232
BmrFI CCNGG 3 cut(s) 18, 98, 108
BmrI ACTGGG 1 cut(s) 73
BmuI ACTGGG 1 cut(s) 73
BpuMI CCSGG 1 cut(s) 98
BsaBI GATNNNNATC 1 cut(s) 264
BsaJI CCNNGG 1 cut(s) 17
Bsc4I CCNNNNNNNGG 3 cut(s) 210, 246, 304
Bse1I ACTGG 2 cut(s) 68, 287
Bse8I GATNNNNATC 1 cut(s) 264
BseBI CCWGG 2 cut(s) 18, 108
BseDI CCNNGG 1 cut(s) 17
BseGI GGATG 2 cut(s) 280, 319
BseJI GATNNNNATC 1 cut(s) 264
BseLI CCNNNNNNNGG 3 cut(s) 210, 246, 304
BseNI ACTGG 2 cut(s) 68, 287
BseSI GKGCMC 1 cut(s) 299
BseXI GCAGC 1 cut(s) 193
BshFI GGCC 1 cut(s) 286
BsiSI CCGG 1 cut(s) 98
BslFI GGGAC 1 cut(s) 244
BslI CCNNNNNNNGG 3 cut(s) 210, 246, 304
BsmFI GGGAC 1 cut(s) 244
BsnI GGCC 1 cut(s) 286
Bsp1286I GDGCHC 1 cut(s) 299
Bsp143I GATC 3 cut(s) 3, 49, 316
BspACI CCGC 2 cut(s) 7, 204
BspANI GGCC 1 cut(s) 286
BspLI GGNNCC 1 cut(s) 232
BspPI GGATC 2 cut(s) 44, 311
BsrI ACTGG 2 cut(s) 68, 287
BssECI CCNNGG 1 cut(s) 17
BssMI GATC 3 cut(s) 3, 49, 316
BssSI CACGAG 1 cut(s) 225
Bst2BI CACGAG 1 cut(s) 225
Bst2UI CCWGG 2 cut(s) 18, 108
Bst4CI ACNGT 3 cut(s) 88, 325, 357
BstDEI CTNAG 1 cut(s) 360
BstF5I GGATG 2 cut(s) 280, 319
BstKTI GATC 3 cut(s) 6, 52, 319
BstMBI GATC 3 cut(s) 3, 49, 316
BstMWI GCNNNNNNNGC 1 cut(s) 341
BstNI CCWGG 2 cut(s) 18, 108
BstSCI CCNGG 3 cut(s) 16, 96, 106
BstSFI CTRYAG 1 cut(s) 321
BstSLI GKGCMC 1 cut(s) 299
BstV1I GCAGC 1 cut(s) 193
BsuRI GGCC 1 cut(s) 286
BtsCI GGATG 2 cut(s) 280, 319
BtsIMutI CAGTG 2 cut(s) 275, 280
Cfr13I GGNCC 1 cut(s) 231
Csp6I GTAC 2 cut(s) 164, 326
CviAII CATG 2 cut(s) 10, 133
CviJI RGCY 3 cut(s) 25, 142, 286
CviKI_1 RGCY 3 cut(s) 25, 142, 286
CviQI GTAC 2 cut(s) 164, 326
DdeI CTNAG 1 cut(s) 360
DpnI GATC 3 cut(s) 5, 51, 318
DpnII GATC 3 cut(s) 3, 49, 316
DraIII CACNNNGTG 1 cut(s) 227
Eco47I GGWCC 1 cut(s) 231
EcoRII CCWGG 2 cut(s) 16, 106
FaeI CATG 2 cut(s) 13, 136
FaiI YATR 5 cut(s) 11, 121, 134, 301, 353
FaqI GGGAC 1 cut(s) 244
FatI CATG 2 cut(s) 9, 132
Fnu4HI GCNGC 1 cut(s) 207
FokI GGATG 2 cut(s) 287, 326
Fsp4HI GCNGC 1 cut(s) 207
GluI GCNGC 1 cut(s) 207
HaeIII GGCC 1 cut(s) 286
HapII CCGG 1 cut(s) 98
Hin1II CATG 2 cut(s) 13, 136
HpaII CCGG 1 cut(s) 98
HphI GGTGA 2 cut(s) 136, 213
Hpy188I TCNGA 1 cut(s) 148
Hpy99I CGWCG 1 cut(s) 245
HpyAV CCTTC 1 cut(s) 131
HpyCH4III ACNGT 3 cut(s) 88, 325, 357
HpyCH4IV ACGT 1 cut(s) 293
HpyF10VI GCNNNNNNNGC 1 cut(s) 341
HpyF3I CTNAG 1 cut(s) 360
HpySE526I ACGT 1 cut(s) 293
Hsp92II CATG 2 cut(s) 13, 136
Kzo9I GATC 3 cut(s) 3, 49, 316
LmnI GCTCC 1 cut(s) 67
LpnPI CCDG 8 cut(s) 3, 26, 30, 49, 93, 111, 120, 268
Lsp1109I GCAGC 1 cut(s) 193
MaeII ACGT 1 cut(s) 293
MaeIII GTNAC 1 cut(s) 79
MalI GATC 3 cut(s) 5, 51, 318
MboI GATC 3 cut(s) 3, 49, 316
MhlI GDGCHC 1 cut(s) 299
MmeI TCCRAC 2 cut(s) 126, 314
MnlI CCTC 4 cut(s) 142, 177, 234, 297
MseI TTAA 1 cut(s) 56
MspA1I CMGCKG 1 cut(s) 206
MspI CCGG 1 cut(s) 98
MspR9I CCNGG 3 cut(s) 18, 98, 108
MvaI CCWGG 2 cut(s) 18, 108
MwoI GCNNNNNNNGC 1 cut(s) 341
NciI CCSGG 1 cut(s) 98
NdeII GATC 3 cut(s) 3, 49, 316
NlaIII CATG 2 cut(s) 13, 136
NlaIV GGNNCC 1 cut(s) 232
PkrI GCNGC 1 cut(s) 208
Psp6I CCWGG 2 cut(s) 16, 106
PspGI CCWGG 2 cut(s) 16, 106
PspN4I GGNNCC 1 cut(s) 232
PspPI GGNCC 1 cut(s) 231
RsaI GTAC 2 cut(s) 165, 327
RsaNI GTAC 2 cut(s) 164, 326
SaqAI TTAA 1 cut(s) 56
SatI GCNGC 1 cut(s) 207
Sau3AI GATC 3 cut(s) 3, 49, 316
Sau96I GGNCC 1 cut(s) 231
ScrFI CCNGG 3 cut(s) 18, 98, 108
SduI GDGCHC 1 cut(s) 299
SetI ASST 5 cut(s) 19, 27, 169, 226, 296
SfcI CTRYAG 1 cut(s) 321
SinI GGWCC 1 cut(s) 231
SsiI CCGC 2 cut(s) 7, 204
StyD4I CCNGG 3 cut(s) 16, 96, 106
TaaI ACNGT 3 cut(s) 88, 325, 357
TaiI ACGT 1 cut(s) 296
Tru1I TTAA 1 cut(s) 56
Tru9I TTAA 1 cut(s) 56
TscAI CASTG 2 cut(s) 275, 287
TseI GCWGC 1 cut(s) 206
TspDTI ATGAA 1 cut(s) 26
TspGWI ACGGA 4 cut(s) 42, 159, 320, 326
TspRI CASTG 2 cut(s) 275, 287
VpaK11BI GGWCC 1 cut(s) 231
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.