RLG00000007703

zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0016400
Physical Location & Seq
Reverse (-)
20068849 .. 20069589
741 bp
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UTR
Exon/CDS
Intron
RLM00000007703

Sequence Viewer

Length: 741 bp
ATGTGCTCGTACAAGTATATCTATCCTGATTTTGCTGAATACAGTGATAGCGCGTCTGCTACTGGCAAGAGTACAATCCAAATGCCTGAAAGCTTTGCCAAAGGAGGTGATGTTATGTTTTGTGGGATTTGTGGTGCGAGGGACCACAACCCTAAAATATGCTACTTCAAGCGTTTTATCAAATTATTCACTGGTACACCTCCACCTGTCAAGATTATTGATGTTCGTCCAAGCTCACCAGAAAGGAAATTCACTTGGTCGACGGACTTCCTTGTTGTGCCAAGGGAGTTTTTACATCAGTCATGGGTGAAGCCTAGTGGTGATGTGGATGAGGAATTCTTTGCTTCCCCGGCGGAGATGGTTGAATATATCATGGAGACAAACAAGAAGAATAAACCAACAGGTAGTGTGGCAGAAAAACCAGTGGTTATTGGAGGTGCGTTTACTTCTCCACGACGTCCTCTTGAGTACTGTAGGATTTGTTGCAAGTACATTGACCACTGTGATTTAACTTGTCCATACCTGGAATATGTCCCACCTGGTGCAACTGTTGGCCTTGGATGTCTAGTAGTTTGTAGTCTGTGTGGTTCCGAGAAATGTGACGAATGTCGGGTCCAACGTGTTGCTCCCATGTTTTGTCTGAAGTGTGCTACTAAGTTTGACCACCTCGAGAGAGATTGCCCACTCAAGACTAGAGAGGATGCAGCTGCTGGTGCATTTAGCAGTATGGTAACCTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

247

Amino Acids

27.45

Weight (kDa)

6.85

Isoelectric Point (pI)

39.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016400)

Species Orthologous Gene IDs
malus_domestica MD10G1001800.v1.1
pyrus_communis pycom10g00170
rosa_laevigata RLG00000007703 RLG00000007704
rosa_multiflora Rmu_sc0001162.1_g000001
rosa_rugosa Rorug04G0169600 Rorug04G0175900
rosa_samantha Rh4AG230300 Rh4AG234900 Rh4BG233200 Rh4CG249800 Rh4DG229000 Rh4DG233800
rosa_wichuraiana Rw4G019940 Rw4G020350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 460
AccI GTMKAC 1 cut(s) 260
AccII CGCG 1 cut(s) 53
AciI CCGC 1 cut(s) 353
AcsI RAATTY 2 cut(s) 248, 335
AcuI CTGAAG 1 cut(s) 662
AcyI GRCGYC 1 cut(s) 457
AdeI CACNNNGTG 1 cut(s) 542
AfaI GTAC 5 cut(s) 11, 73, 196, 470, 491
AflIII ACRYGT 1 cut(s) 619
AgsI TTSAA 2 cut(s) 169, 365
AjnI CCWGG 2 cut(s) 522, 538
AluBI AGCT 3 cut(s) 93, 234, 707
AluI AGCT 3 cut(s) 93, 234, 707
Alw21I GWGCWC 1 cut(s) 8
Alw26I GTCTC 1 cut(s) 371
AlwNI CAGNNNCTG 1 cut(s) 710
Ama87I CYCGRG 1 cut(s) 668
AoxI GGCC 1 cut(s) 553
ApeKI GCWGC 2 cut(s) 704, 707
ApoI RAATTY 2 cut(s) 248, 335
ArsI GACNNNNNNTTYG 2 cut(s) 597, 629
AspLEI GCGC 1 cut(s) 53
AspS9I GGNCC 2 cut(s) 142, 613
AsuC2I CCSGG 1 cut(s) 350
AsuHPI GGTGA 4 cut(s) 119, 228, 319, 332
AvaI CYCGRG 1 cut(s) 668
AvaII GGWCC 2 cut(s) 142, 613
Bbv12I GWGCWC 1 cut(s) 8
BbvI GCAGC 2 cut(s) 694, 716
BccI CCATC 1 cut(s) 352
BciT130I CCWGG 2 cut(s) 524, 540
BcnI CCSGG 1 cut(s) 350
BcoDI GTCTC 1 cut(s) 371
BfaI CTAG 3 cut(s) 315, 566, 693
BfmI CTRYAG 1 cut(s) 472
BisI GCNGC 2 cut(s) 705, 708
BlsI GCNGC 2 cut(s) 706, 709
BmcAI AGTACT 1 cut(s) 470
Bme1390I CCNGG 3 cut(s) 350, 524, 540
Bme18I GGWCC 2 cut(s) 142, 613
BmeT110I CYCGRG 1 cut(s) 668
BmgT120I GGNCC 2 cut(s) 142, 613
BmiI GGNNCC 3 cut(s) 143, 589, 614
BmrFI CCNGG 3 cut(s) 350, 524, 540
BmsI GCATC 1 cut(s) 691
BoxI GACNNNNGTC 1 cut(s) 606
BpuEI CTTGAG 2 cut(s) 485, 671
BpuMI CCSGG 1 cut(s) 350
BsaHI GRCGYC 1 cut(s) 457
BsaJI CCNNGG 3 cut(s) 281, 348, 556
BsaXI ACNNNNNCTCC 2 cut(s) 96, 126
Bse1I ACTGG 3 cut(s) 67, 196, 422
BseBI CCWGG 2 cut(s) 524, 540
BseDI CCNNGG 3 cut(s) 281, 348, 556
BseGI GGATG 3 cut(s) 334, 566, 706
BseNI ACTGG 3 cut(s) 67, 196, 422
BseXI GCAGC 2 cut(s) 694, 716
Bsh1236I CGCG 1 cut(s) 53
BshFI GGCC 1 cut(s) 555
BsiHKAI GWGCWC 1 cut(s) 8
BsiHKCI CYCGRG 1 cut(s) 668
BsiSI CCGG 1 cut(s) 350
BslFI GGGAC 2 cut(s) 155, 518
BsmAI GTCTC 1 cut(s) 371
BsmFI GGGAC 2 cut(s) 155, 518
BsnI GGCC 1 cut(s) 555
BsoBI CYCGRG 1 cut(s) 668
Bsp1286I GDGCHC 1 cut(s) 8
BspACI CCGC 1 cut(s) 353
BspANI GGCC 1 cut(s) 555
BspFNI CGCG 1 cut(s) 53
BspLI GGNNCC 3 cut(s) 143, 589, 614
BsrI ACTGG 3 cut(s) 67, 196, 422
BssECI CCNNGG 3 cut(s) 281, 348, 556
BssNI GRCGYC 1 cut(s) 457
BssT1I CCWWGG 2 cut(s) 281, 556
Bst2UI CCWGG 2 cut(s) 524, 540
Bst4CI ACNGT 4 cut(s) 44, 473, 503, 550
BstACI GRCGYC 1 cut(s) 457
BstDEI CTNAG 1 cut(s) 654
BstEII GGTNACC 1 cut(s) 730
BstF5I GGATG 3 cut(s) 334, 566, 706
BstFNI CGCG 1 cut(s) 53
BstHHI GCGC 1 cut(s) 53
BstMAI GTCTC 1 cut(s) 371
BstMWI GCNNNNNNNGC 2 cut(s) 350, 713
BstNI CCWGG 2 cut(s) 524, 540
BstPAI GACNNNNGTC 1 cut(s) 606
BstPI GGTNACC 1 cut(s) 730
BstSCI CCNGG 3 cut(s) 348, 522, 538
BstSFI CTRYAG 1 cut(s) 472
BstUI CGCG 1 cut(s) 53
BstV1I GCAGC 2 cut(s) 694, 716
BsuRI GGCC 1 cut(s) 555
BtsCI GGATG 3 cut(s) 334, 566, 706
BtsIMutI CAGTG 4 cut(s) 49, 189, 429, 499
CaiI CAGNNNCTG 1 cut(s) 710
CfoI GCGC 1 cut(s) 53
Cfr13I GGNCC 2 cut(s) 142, 613
CseI GACGC 1 cut(s) 42
CsiI ACCWGGT 1 cut(s) 538
Csp6I GTAC 5 cut(s) 10, 72, 195, 469, 490
CviAII CATG 3 cut(s) 303, 373, 631
CviJI RGCY 5 cut(s) 93, 234, 313, 555, 707
CviKI_1 RGCY 5 cut(s) 93, 234, 313, 555, 707
CviQI GTAC 5 cut(s) 10, 72, 195, 469, 490
DdeI CTNAG 1 cut(s) 654
DraIII CACNNNGTG 1 cut(s) 542
EciI GGCGGA 1 cut(s) 368
Eco130I CCWWGG 2 cut(s) 281, 556
Eco47I GGWCC 2 cut(s) 142, 613
Eco57I CTGAAG 1 cut(s) 662
Eco88I CYCGRG 1 cut(s) 668
Eco91I GGTNACC 1 cut(s) 730
EcoO65I GGTNACC 1 cut(s) 730
EcoRI GAATTC 1 cut(s) 335
EcoRII CCWGG 2 cut(s) 522, 538
EcoT14I CCWWGG 2 cut(s) 281, 556
ErhI CCWWGG 2 cut(s) 281, 556
FaeI CATG 3 cut(s) 306, 376, 634
FaqI GGGAC 2 cut(s) 155, 518
FatI CATG 3 cut(s) 302, 372, 630
FblI GTMKAC 1 cut(s) 260
Fnu4HI GCNGC 2 cut(s) 705, 708
FokI GGATG 3 cut(s) 341, 573, 713
Fsp4HI GCNGC 2 cut(s) 705, 708
FspBI CTAG 3 cut(s) 315, 566, 693
GlaI GCGC 1 cut(s) 52
GluI GCNGC 2 cut(s) 705, 708
HaeIII GGCC 1 cut(s) 555
HapII CCGG 1 cut(s) 350
HgaI GACGC 1 cut(s) 42
HhaI GCGC 1 cut(s) 53
Hin1I GRCGYC 1 cut(s) 457
Hin1II CATG 3 cut(s) 306, 376, 634
Hin6I GCGC 1 cut(s) 51
HinP1I GCGC 1 cut(s) 51
HincII GTYRAC 1 cut(s) 261
HindII GTYRAC 1 cut(s) 261
HindIII AAGCTT 1 cut(s) 91
HpaII CCGG 1 cut(s) 350
HphI GGTGA 4 cut(s) 119, 228, 319, 332
Hpy166II GTNNAC 3 cut(s) 197, 261, 444
Hpy188I TCNGA 2 cut(s) 592, 642
Hpy188III TCNNGA 5 cut(s) 26, 211, 464, 670, 688
Hpy8I GTNNAC 3 cut(s) 197, 261, 444
Hpy99I CGWCG 2 cut(s) 265, 459
HpyCH4III ACNGT 4 cut(s) 44, 473, 503, 550
HpyCH4IV ACGT 2 cut(s) 457, 619
HpyCH4V TGCA 4 cut(s) 486, 545, 704, 716
HpyF10VI GCNNNNNNNGC 2 cut(s) 350, 713
HpyF3I CTNAG 1 cut(s) 654
HpySE526I ACGT 2 cut(s) 457, 619
Hsp92I GRCGYC 1 cut(s) 457
Hsp92II CATG 3 cut(s) 306, 376, 634
HspAI GCGC 1 cut(s) 51
LmnI GCTCC 1 cut(s) 631
Lsp1109I GCAGC 2 cut(s) 694, 716
LweI GCATC 1 cut(s) 691
MabI ACCWGGT 1 cut(s) 538
MaeI CTAG 3 cut(s) 315, 566, 693
MaeII ACGT 2 cut(s) 457, 619
MaeIII GTNAC 2 cut(s) 599, 730
MboII GAAGA 1 cut(s) 400
MhlI GDGCHC 1 cut(s) 8
MluCI AATT 3 cut(s) 182, 248, 335
MmeI TCCRAC 1 cut(s) 640
MnlI CCTC 8 cut(s) 98, 132, 210, 325, 428, 471, 677, 691
MseI TTAA 1 cut(s) 509
MspA1I CMGCKG 1 cut(s) 707
MspI CCGG 1 cut(s) 350
MspR9I CCNGG 3 cut(s) 350, 524, 540
MvaI CCWGG 2 cut(s) 524, 540
MvnI CGCG 1 cut(s) 53
MwoI GCNNNNNNNGC 2 cut(s) 350, 713
NciI CCSGG 1 cut(s) 350
NlaIII CATG 3 cut(s) 306, 376, 634
NlaIV GGNNCC 3 cut(s) 143, 589, 614
NmuCI GTSAC 1 cut(s) 599
PaeR7I CTCGAG 1 cut(s) 668
PcsI WCGNNNNNNNCGW 1 cut(s) 616
PkrI GCNGC 2 cut(s) 706, 709
PshAI GACNNNNGTC 1 cut(s) 606
Psp6I CCWGG 2 cut(s) 522, 538
PspEI GGTNACC 1 cut(s) 730
PspGI CCWGG 2 cut(s) 522, 538
PspN4I GGNNCC 3 cut(s) 143, 589, 614
PspPI GGNCC 2 cut(s) 142, 613
PstNI CAGNNNCTG 1 cut(s) 710
PvuII CAGCTG 1 cut(s) 707
RsaI GTAC 5 cut(s) 11, 73, 196, 470, 491
RsaNI GTAC 5 cut(s) 10, 72, 195, 469, 490
SalI GTCGAC 1 cut(s) 259
SaqAI TTAA 1 cut(s) 509
SatI GCNGC 2 cut(s) 705, 708
Sau96I GGNCC 2 cut(s) 142, 613
ScaI AGTACT 1 cut(s) 470
ScrFI CCNGG 3 cut(s) 350, 524, 540
SduI GDGCHC 1 cut(s) 8
SexAI ACCWGGT 1 cut(s) 538
SfaNI GCATC 1 cut(s) 691
SfcI CTRYAG 1 cut(s) 472
Sfr274I CTCGAG 1 cut(s) 668
SinI GGWCC 2 cut(s) 142, 613
SlaI CTCGAG 1 cut(s) 668
SmlI CTYRAG 3 cut(s) 464, 668, 686
SmoI CTYRAG 3 cut(s) 464, 668, 686
Sse9I AATT 3 cut(s) 182, 248, 335
SsiI CCGC 1 cut(s) 353
SspMI CTAG 3 cut(s) 315, 566, 693
StyD4I CCNGG 3 cut(s) 348, 522, 538
StyI CCWWGG 2 cut(s) 281, 556
TaaI ACNGT 4 cut(s) 44, 473, 503, 550
TaiI ACGT 2 cut(s) 460, 622
TaqI TCGA 2 cut(s) 260, 669
TasI AATT 3 cut(s) 182, 248, 335
TatI WGTACW 3 cut(s) 71, 468, 489
Tru1I TTAA 1 cut(s) 509
Tru9I TTAA 1 cut(s) 509
TscAI CASTG 4 cut(s) 49, 196, 429, 506
TseFI GTSAC 1 cut(s) 599
TseI GCWGC 2 cut(s) 704, 707
Tsp45I GTSAC 1 cut(s) 599
TspGWI ACGGA 1 cut(s) 278
TspRI CASTG 4 cut(s) 49, 196, 429, 506
VpaK11BI GGWCC 2 cut(s) 142, 613
XapI RAATTY 2 cut(s) 248, 335
XhoI CTCGAG 1 cut(s) 668
XmiI GTMKAC 1 cut(s) 260
XspI CTAG 3 cut(s) 315, 566, 693
ZraI GACGTC 1 cut(s) 458
ZrmI AGTACT 1 cut(s) 470
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.