MD10G1058700.v1.1

auxin-induced protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0017723
Physical Location & Seq
Reverse (-)
7939190 .. 7939543
354 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1058700.v1.1.491

Sequence Viewer

Length: 354 bp
ATGGGCATTCGTGTAGCAGACATTGTTCTTCATCATGCTAAGCAAATTGTCCGAAGACATAAGAGGTCTCAACATTTCAAGTACCATTTCTTATATACACCACTTGCATCGACAATAACAGCAACAACAACGTTGGATGTTCCGAAAGGCTGTTTTGCGGTTTATGTCGGAGAGGAAGACGAGGAGAAGAAGCGGTTTGTGATTCCGGTTTCCTACTTGAACCACCCTTCATTCCAAGATTTGTTGAGTCAGGCTGCCGAAGAGTTTGGTTTTGATCATCAAGTGGGTGGCCTTAGAATTCCTTGCAGTGAAAGGCATTTTACGGACCTCACTTTCCGTTTAAATATTAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

118

Amino Acids

13.54

Weight (kDa)

8.65

Isoelectric Point (pI)

49.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 22 - 111 5.3e-24 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017723)

Species Orthologous Gene IDs
malus_domestica MD10G1058700.v1.1
rosa_chinensis RchiOBHm_Chr5g0056751 RchiOBHm_Chr6g0269011
rosa_laevigata RLG00000013889 RLG00000035125
rosa_multiflora Rmu_sc0001460.1_g000058 Rmu_sc0004350.1_g000009
rosa_roxburghii Rroxscaffold_1G00023620 Rroxscaffold_7G00199090
rosa_rugosa Rorug06G0044600
rosa_wichuraiana Rw5G034900 Rw6G014180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 158, 193
AclI AACGTT 1 cut(s) 131
AcsI RAATTY 1 cut(s) 297
AfaI GTAC 1 cut(s) 83
AgsI TTSAA 2 cut(s) 79, 220
Alw26I GTCTC 1 cut(s) 72
AoxI GGCC 1 cut(s) 289
ApeKI GCWGC 1 cut(s) 254
ApoI RAATTY 1 cut(s) 297
AspS9I GGNCC 1 cut(s) 325
AvaII GGWCC 1 cut(s) 325
BbsI GAAGAC 2 cut(s) 61, 183
BbvI GCAGC 1 cut(s) 241
BclI TGATCA 1 cut(s) 274
BcoDI GTCTC 1 cut(s) 72
BisI GCNGC 1 cut(s) 255
BlpI GCTNAGC 1 cut(s) 39
BlsI GCNGC 1 cut(s) 256
Bme18I GGWCC 1 cut(s) 325
BmgT120I GGNCC 1 cut(s) 325
BmsI GCATC 1 cut(s) 116
BpiI GAAGAC 2 cut(s) 61, 183
Bpu1102I GCTNAGC 1 cut(s) 39
BsaI GGTCTC 1 cut(s) 72
BsaWI WCCGGW 1 cut(s) 205
BseGI GGATG 1 cut(s) 142
BseRI GAGGAG 1 cut(s) 197
BseXI GCAGC 1 cut(s) 241
BshFI GGCC 1 cut(s) 291
BsiSI CCGG 1 cut(s) 206
BsmAI GTCTC 1 cut(s) 72
BsmI GAATGC 1 cut(s) 6
BsnI GGCC 1 cut(s) 291
Bso31I GGTCTC 1 cut(s) 72
Bsp143I GATC 1 cut(s) 274
Bsp1720I GCTNAGC 1 cut(s) 39
BspACI CCGC 2 cut(s) 158, 193
BspANI GGCC 1 cut(s) 291
BspTNI GGTCTC 1 cut(s) 72
BssMI GATC 1 cut(s) 274
Bst6I CTCTTC 1 cut(s) 255
BstDEI CTNAG 2 cut(s) 39, 293
BstF5I GGATG 1 cut(s) 142
BstKTI GATC 1 cut(s) 277
BstMAI GTCTC 1 cut(s) 72
BstMBI GATC 1 cut(s) 274
BstV1I GCAGC 1 cut(s) 241
BstV2I GAAGAC 2 cut(s) 61, 183
BsuRI GGCC 1 cut(s) 291
BtsCI GGATG 1 cut(s) 142
BtsI GCAGTG 1 cut(s) 313
BtsIMutI CAGTG 1 cut(s) 313
Cfr13I GGNCC 1 cut(s) 325
Csp6I GTAC 1 cut(s) 82
CviAII CATG 1 cut(s) 35
CviJI RGCY 3 cut(s) 150, 254, 291
CviKI_1 RGCY 3 cut(s) 150, 254, 291
CviQI GTAC 1 cut(s) 82
DdeI CTNAG 2 cut(s) 39, 293
DpnI GATC 1 cut(s) 276
DpnII GATC 1 cut(s) 274
DraI TTTAAA 1 cut(s) 342
Eam1104I CTCTTC 1 cut(s) 255
EarI CTCTTC 1 cut(s) 255
Eco31I GGTCTC 1 cut(s) 72
Eco47I GGWCC 1 cut(s) 325
EcoRI GAATTC 1 cut(s) 297
FaeI CATG 1 cut(s) 38
FaiI YATR 5 cut(s) 36, 60, 94, 96, 165
FatI CATG 1 cut(s) 34
FbaI TGATCA 1 cut(s) 274
Fnu4HI GCNGC 1 cut(s) 255
FokI GGATG 1 cut(s) 149
Fsp4HI GCNGC 1 cut(s) 255
GluI GCNGC 1 cut(s) 255
HaeIII GGCC 1 cut(s) 291
HapII CCGG 1 cut(s) 206
Hin1II CATG 1 cut(s) 38
HinfI GANTC 2 cut(s) 202, 247
HpaII CCGG 1 cut(s) 206
Hpy188I TCNGA 3 cut(s) 53, 144, 170
HpyAV CCTTC 1 cut(s) 237
HpyCH4IV ACGT 1 cut(s) 131
HpyCH4V TGCA 2 cut(s) 107, 306
HpyF3I CTNAG 2 cut(s) 39, 293
HpySE526I ACGT 1 cut(s) 131
Hsp92II CATG 1 cut(s) 38
Ksp22I TGATCA 1 cut(s) 274
Kzo9I GATC 1 cut(s) 274
LpnPI CCDG 2 cut(s) 219, 236
Lsp1109I GCAGC 1 cut(s) 241
LweI GCATC 1 cut(s) 116
MaeII ACGT 1 cut(s) 131
MalI GATC 1 cut(s) 276
MboI GATC 1 cut(s) 274
MboII GAAGA 5 cut(s) 20, 66, 188, 199, 272
MluCI AATT 2 cut(s) 45, 297
MlyI GAGTC 1 cut(s) 256
MmeI TCCRAC 2 cut(s) 114, 148
MnlI CCTC 4 cut(s) 57, 166, 175, 338
MseI TTAA 1 cut(s) 341
MspI CCGG 1 cut(s) 206
Mva1269I GAATGC 1 cut(s) 6
NdeII GATC 1 cut(s) 274
NlaIII CATG 1 cut(s) 38
PctI GAATGC 1 cut(s) 6
PfeI GAWTC 1 cut(s) 202
PkrI GCNGC 1 cut(s) 256
PleI GAGTC 1 cut(s) 255
PpsI GAGTC 1 cut(s) 255
Psp1406I AACGTT 1 cut(s) 131
PspPI GGNCC 1 cut(s) 325
RsaI GTAC 1 cut(s) 83
RsaNI GTAC 1 cut(s) 82
SaqAI TTAA 1 cut(s) 341
SatI GCNGC 1 cut(s) 255
Sau3AI GATC 1 cut(s) 274
Sau96I GGNCC 1 cut(s) 325
SchI GAGTC 1 cut(s) 256
SetI ASST 3 cut(s) 68, 134, 330
SfaNI GCATC 1 cut(s) 116
SinI GGWCC 1 cut(s) 325
Sse9I AATT 2 cut(s) 45, 297
SsiI CCGC 2 cut(s) 158, 193
SspI AATATT 1 cut(s) 346
TaiI ACGT 1 cut(s) 134
TaqI TCGA 1 cut(s) 110
TasI AATT 2 cut(s) 45, 297
TfiI GAWTC 1 cut(s) 202
Tru1I TTAA 1 cut(s) 341
Tru9I TTAA 1 cut(s) 341
TscAI CASTG 1 cut(s) 313
TseI GCWGC 1 cut(s) 254
TspDTI ATGAA 2 cut(s) 20, 219
TspGWI ACGGA 2 cut(s) 326, 338
TspRI CASTG 1 cut(s) 313
VpaK11BI GGWCC 1 cut(s) 325
XapI RAATTY 1 cut(s) 297
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.