Rroxscaffold_1G00023620

Auxin-induced protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0017723
Physical Location & Seq
Forward (+)
29160565 .. 29164033
3469 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00023620.1

Sequence Viewer

Length: 420 bp
ATGGGCATTCGTGTAACAGACATGGTCATTCGTGCTAGGCAAATTATCCAGAGACATAAAAGCAGGTCTCATTCCATCTCATCTTATTCACAACCAACATCAACAGCAGCGTTGGATGTTCCGAAAGGCTATTTTGCGGTTTATGTCGGTGAGGAAGACGAGAAGCAGAAGCGATTTGTGATTCCGATATCCTACTTGAACTACCCTTTGTTCCAAGACTTGTTGAATCAGGCTGCTGAAGAATTCGGTTTTGATCCTCCAACGGGTAAAAGCGGACTTAGAATACCTTGCAAGGTTTTACTGGAGCTCGTTGTGGATGACTGTTGGTTGATAGTGGATGAGCTCGAGTTAGTCATGGATGAGCTGATAGTCTTGATGGGTGCAGCAGAACAGCCACGTCAATTGGACTTTGCCGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

139

Amino Acids

15.72

Weight (kDa)

4.87

Isoelectric Point (pI)

34.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 14 - 100 3.3e-22 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017723)

Species Orthologous Gene IDs
malus_domestica MD10G1058700.v1.1
rosa_chinensis RchiOBHm_Chr5g0056751 RchiOBHm_Chr6g0269011
rosa_laevigata RLG00000013889 RLG00000035125
rosa_multiflora Rmu_sc0001460.1_g000058 Rmu_sc0004350.1_g000009
rosa_roxburghii Rroxscaffold_1G00023620 Rroxscaffold_7G00199090
rosa_rugosa Rorug06G0044600
rosa_wichuraiana Rw5G034900 Rw6G014180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 54
AciI CCGC 3 cut(s) 137, 273, 414
AclWI GGATC 1 cut(s) 248
AcsI RAATTY 1 cut(s) 242
AcuI CTGAAG 1 cut(s) 258
AfiI CCNNNNNNNGG 1 cut(s) 263
AgsI TTSAA 2 cut(s) 199, 226
AjiI CACGTC 1 cut(s) 398
AluBI AGCT 3 cut(s) 307, 343, 364
AluI AGCT 3 cut(s) 307, 343, 364
Alw21I GWGCWC 2 cut(s) 309, 345
Alw26I GTCTC 2 cut(s) 46, 72
AlwI GGATC 1 cut(s) 248
Ama87I CYCGRG 1 cut(s) 344
ApeKI GCWGC 3 cut(s) 107, 233, 383
ApoI RAATTY 1 cut(s) 242
AsuHPI GGTGA 1 cut(s) 161
AvaI CYCGRG 1 cut(s) 344
BanII GRGCYC 2 cut(s) 309, 345
BbsI GAAGAC 1 cut(s) 162
Bbv12I GWGCWC 2 cut(s) 309, 345
BbvI GCAGC 3 cut(s) 119, 220, 395
BccI CCATC 2 cut(s) 83, 370
BcoDI GTCTC 2 cut(s) 46, 72
BfaI CTAG 1 cut(s) 36
BfuAI ACCTGC 1 cut(s) 54
BisI GCNGC 4 cut(s) 108, 234, 384, 414
BlsI GCNGC 4 cut(s) 109, 235, 385, 415
BmeT110I CYCGRG 1 cut(s) 344
BmgBI CACGTC 1 cut(s) 398
BpiI GAAGAC 1 cut(s) 162
BpmI CTGGAG 1 cut(s) 323
BsaI GGTCTC 1 cut(s) 72
Bsc4I CCNNNNNNNGG 1 cut(s) 263
Bse1I ACTGG 1 cut(s) 306
BseGI GGATG 4 cut(s) 121, 322, 343, 364
BseLI CCNNNNNNNGG 1 cut(s) 263
BseNI ACTGG 1 cut(s) 306
BseXI GCAGC 3 cut(s) 119, 220, 395
BsgI GTGCAG 1 cut(s) 402
BsiHKAI GWGCWC 2 cut(s) 309, 345
BsiHKCI CYCGRG 1 cut(s) 344
BslI CCNNNNNNNGG 1 cut(s) 263
BsmAI GTCTC 2 cut(s) 46, 72
BsmI GAATGC 1 cut(s) 6
Bso31I GGTCTC 1 cut(s) 72
BsoBI CYCGRG 1 cut(s) 344
Bsp1286I GDGCHC 2 cut(s) 309, 345
Bsp143I GATC 1 cut(s) 253
BspACI CCGC 3 cut(s) 137, 273, 414
BspMI ACCTGC 1 cut(s) 54
BspPI GGATC 1 cut(s) 248
BspTNI GGTCTC 1 cut(s) 72
BsrI ACTGG 1 cut(s) 306
BssMI GATC 1 cut(s) 253
Bst4CI ACNGT 1 cut(s) 323
BstDEI CTNAG 1 cut(s) 278
BstF5I GGATG 4 cut(s) 121, 322, 343, 364
BstKTI GATC 1 cut(s) 256
BstMAI GTCTC 2 cut(s) 46, 72
BstMBI GATC 1 cut(s) 253
BstV1I GCAGC 3 cut(s) 119, 220, 395
BstV2I GAAGAC 1 cut(s) 162
BtrI CACGTC 1 cut(s) 398
BtsCI GGATG 4 cut(s) 121, 322, 343, 364
BveI ACCTGC 1 cut(s) 54
CspCI CAANNNNNGTGG 2 cut(s) 384, 419
CviAII CATG 2 cut(s) 22, 355
CviJI RGCY 6 cut(s) 129, 233, 307, 343, 364, 394
CviKI_1 RGCY 6 cut(s) 129, 233, 307, 343, 364, 394
DdeI CTNAG 1 cut(s) 278
DpnI GATC 1 cut(s) 255
DpnII GATC 1 cut(s) 253
Ecl136II GAGCTC 2 cut(s) 307, 343
Eco24I GRGCYC 2 cut(s) 309, 345
Eco31I GGTCTC 1 cut(s) 72
Eco32I GATATC 1 cut(s) 189
Eco53kI GAGCTC 2 cut(s) 307, 343
Eco57I CTGAAG 1 cut(s) 258
Eco88I CYCGRG 1 cut(s) 344
EcoICRI GAGCTC 2 cut(s) 307, 343
EcoRI GAATTC 1 cut(s) 242
EcoRV GATATC 1 cut(s) 189
EcoT38I GRGCYC 2 cut(s) 309, 345
FaeI CATG 2 cut(s) 25, 358
FaiI YATR 4 cut(s) 23, 57, 144, 356
FatI CATG 2 cut(s) 21, 354
Fnu4HI GCNGC 4 cut(s) 108, 234, 384, 414
FokI GGATG 4 cut(s) 128, 329, 350, 371
FriOI GRGCYC 2 cut(s) 309, 345
Fsp4HI GCNGC 4 cut(s) 108, 234, 384, 414
FspBI CTAG 1 cut(s) 36
GluI GCNGC 4 cut(s) 108, 234, 384, 414
GsuI CTGGAG 1 cut(s) 323
Hin1II CATG 2 cut(s) 25, 358
HinfI GANTC 2 cut(s) 181, 226
HphI GGTGA 1 cut(s) 161
Hpy188I TCNGA 2 cut(s) 123, 186
Hpy188III TCNNGA 2 cut(s) 49, 373
HpyCH4III ACNGT 1 cut(s) 323
HpyCH4IV ACGT 1 cut(s) 397
HpyCH4V TGCA 2 cut(s) 291, 383
HpyF3I CTNAG 1 cut(s) 278
HpySE526I ACGT 1 cut(s) 397
Hsp92II CATG 2 cut(s) 25, 358
Kzo9I GATC 1 cut(s) 253
LmnI GCTCC 1 cut(s) 304
LpnPI CCDG 4 cut(s) 49, 62, 215, 287
Lsp1109I GCAGC 3 cut(s) 119, 220, 395
MaeI CTAG 1 cut(s) 36
MaeII ACGT 1 cut(s) 397
MaeIII GTNAC 1 cut(s) 13
MalI GATC 1 cut(s) 255
MboI GATC 1 cut(s) 253
MboII GAAGA 2 cut(s) 167, 251
MfeI CAATTG 1 cut(s) 401
MhlI GDGCHC 2 cut(s) 309, 345
MluCI AATT 3 cut(s) 42, 242, 401
MmeI TCCRAC 2 cut(s) 93, 284
MnlI CCTC 2 cut(s) 145, 267
MunI CAATTG 1 cut(s) 401
Mva1269I GAATGC 1 cut(s) 6
NdeII GATC 1 cut(s) 253
NlaIII CATG 2 cut(s) 25, 358
PaeR7I CTCGAG 1 cut(s) 344
PctI GAATGC 1 cut(s) 6
PfeI GAWTC 2 cut(s) 181, 226
PflFI GACNNNGTC 1 cut(s) 23
PkrI GCNGC 4 cut(s) 109, 235, 385, 415
Psp124BI GAGCTC 2 cut(s) 309, 345
PspXI VCTCGAGB 1 cut(s) 344
PsyI GACNNNGTC 1 cut(s) 23
SacI GAGCTC 2 cut(s) 309, 345
SatI GCNGC 4 cut(s) 108, 234, 384, 414
Sau3AI GATC 1 cut(s) 253
SduI GDGCHC 2 cut(s) 309, 345
SetI ASST 7 cut(s) 68, 289, 297, 309, 345, 366, 400
Sfr274I CTCGAG 1 cut(s) 344
SlaI CTCGAG 1 cut(s) 344
SmlI CTYRAG 1 cut(s) 344
SmoI CTYRAG 1 cut(s) 344
Sse9I AATT 3 cut(s) 42, 242, 401
SsiI CCGC 3 cut(s) 137, 273, 414
SspMI CTAG 1 cut(s) 36
SstI GAGCTC 2 cut(s) 309, 345
TaaI ACNGT 1 cut(s) 323
TaiI ACGT 1 cut(s) 400
TaqI TCGA 1 cut(s) 345
TasI AATT 3 cut(s) 42, 242, 401
TauI GCSGC 1 cut(s) 416
TfiI GAWTC 2 cut(s) 181, 226
TseI GCWGC 3 cut(s) 107, 233, 383
Tth111I GACNNNGTC 1 cut(s) 23
XapI RAATTY 1 cut(s) 242
XhoI CTCGAG 1 cut(s) 344
XspI CTAG 1 cut(s) 36
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.