Rroxscaffold_7G00199090

Auxin-induced protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0017723
Physical Location & Seq
Reverse (-)
45004810 .. 45005215
406 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00199090.1

Sequence Viewer

Length: 339 bp
ATGGGCATTCGTGTGACAGACATGGTCATTCATGCTAGGCAAATTATCCGGAGACATAAAAGCAGGTCTCATTCCATCTCATCTTATTCAGAACCAGCATCAACGGCAGCATTGGATGTTCCGAAAGGCTATTTTGCGGTTTATGTCGGAGAGGAAGACAAGAAGCAGAAGCGGTTTGTAATTCCGATATCCTACTTGAACCACCCTCTGTTCCAAGACTTGTTGAATCAGGCTGCGGAAGAATTCGGTTTTGATCCTCCAACGGATAAAATTGCTGAGACCAGAGAACTTGGGTTAATGTTGTCGTGGTCTTCAGATCTAGTTGATATATATGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

112

Amino Acids

12.78

Weight (kDa)

5.78

Isoelectric Point (pI)

44.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 14 - 85 6.1e-20 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017723)

Species Orthologous Gene IDs
malus_domestica MD10G1058700.v1.1
rosa_chinensis RchiOBHm_Chr5g0056751 RchiOBHm_Chr6g0269011
rosa_laevigata RLG00000013889 RLG00000035125
rosa_multiflora Rmu_sc0001460.1_g000058 Rmu_sc0004350.1_g000009
rosa_roxburghii Rroxscaffold_1G00023620 Rroxscaffold_7G00199090
rosa_rugosa Rorug06G0044600
rosa_wichuraiana Rw5G034900 Rw6G014180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 54
AccIII TCCGGA 1 cut(s) 48
AciI CCGC 3 cut(s) 137, 172, 236
AclWI GGATC 1 cut(s) 248
AcsI RAATTY 1 cut(s) 242
AcuI CTGAAG 1 cut(s) 297
AgsI TTSAA 2 cut(s) 199, 226
Alw26I GTCTC 3 cut(s) 46, 72, 272
AlwI GGATC 1 cut(s) 248
Aor13HI TCCGGA 1 cut(s) 48
ApeKI GCWGC 2 cut(s) 107, 233
ApoI RAATTY 1 cut(s) 242
BbsI GAAGAC 2 cut(s) 162, 303
BbvI GCAGC 2 cut(s) 119, 220
BccI CCATC 1 cut(s) 83
BceAI ACGGC 1 cut(s) 120
BcoDI GTCTC 3 cut(s) 46, 72, 272
BfaI CTAG 2 cut(s) 36, 320
BfuAI ACCTGC 1 cut(s) 54
BglII AGATCT 1 cut(s) 316
BisI GCNGC 2 cut(s) 108, 234
BlsI GCNGC 2 cut(s) 109, 235
BmsI GCATC 1 cut(s) 107
BpiI GAAGAC 2 cut(s) 162, 303
BsaI GGTCTC 2 cut(s) 72, 272
BsaWI WCCGGW 1 cut(s) 48
BseAI TCCGGA 1 cut(s) 48
BseGI GGATG 1 cut(s) 121
BseMII CTCAG 1 cut(s) 267
BseXI GCAGC 2 cut(s) 119, 220
BsiSI CCGG 1 cut(s) 49
BsmAI GTCTC 3 cut(s) 46, 72, 272
BsmI GAATGC 1 cut(s) 6
Bso31I GGTCTC 2 cut(s) 72, 272
Bsp13I TCCGGA 1 cut(s) 48
Bsp143I GATC 2 cut(s) 253, 316
BspACI CCGC 3 cut(s) 137, 172, 236
BspCNI CTCAG 1 cut(s) 268
BspEI TCCGGA 1 cut(s) 48
BspMI ACCTGC 1 cut(s) 54
BspPI GGATC 1 cut(s) 248
BspTNI GGTCTC 2 cut(s) 72, 272
BssMI GATC 2 cut(s) 253, 316
BstDEI CTNAG 1 cut(s) 276
BstF5I GGATG 1 cut(s) 121
BstKTI GATC 2 cut(s) 256, 319
BstMAI GTCTC 3 cut(s) 46, 72, 272
BstMBI GATC 2 cut(s) 253, 316
BstMWI GCNNNNNNNGC 1 cut(s) 104
BstV1I GCAGC 2 cut(s) 119, 220
BstV2I GAAGAC 2 cut(s) 162, 303
BstX2I RGATCY 1 cut(s) 316
BstYI RGATCY 1 cut(s) 316
BtsCI GGATG 1 cut(s) 121
BveI ACCTGC 1 cut(s) 54
CviAII CATG 2 cut(s) 22, 32
CviJI RGCY 2 cut(s) 129, 233
CviKI_1 RGCY 2 cut(s) 129, 233
DdeI CTNAG 1 cut(s) 276
DpnI GATC 2 cut(s) 255, 318
DpnII GATC 2 cut(s) 253, 316
Eco31I GGTCTC 2 cut(s) 72, 272
Eco32I GATATC 1 cut(s) 189
Eco57I CTGAAG 1 cut(s) 297
EcoRI GAATTC 1 cut(s) 242
EcoRV GATATC 1 cut(s) 189
FaeI CATG 2 cut(s) 25, 35
FaiI YATR 7 cut(s) 23, 33, 57, 144, 329, 331, 333
FatI CATG 2 cut(s) 21, 31
Fnu4HI GCNGC 2 cut(s) 108, 234
FokI GGATG 1 cut(s) 128
Fsp4HI GCNGC 2 cut(s) 108, 234
FspBI CTAG 2 cut(s) 36, 320
GluI GCNGC 2 cut(s) 108, 234
HapII CCGG 1 cut(s) 49
Hin1II CATG 2 cut(s) 25, 35
HinfI GANTC 1 cut(s) 226
HpaII CCGG 1 cut(s) 49
Hpy188I TCNGA 5 cut(s) 91, 123, 149, 186, 316
Hpy188III TCNNGA 1 cut(s) 49
HpyF10VI GCNNNNNNNGC 1 cut(s) 104
HpyF3I CTNAG 1 cut(s) 276
Hsp92II CATG 2 cut(s) 25, 35
Kpn2I TCCGGA 1 cut(s) 48
Kzo9I GATC 2 cut(s) 253, 316
LpnPI CCDG 5 cut(s) 49, 62, 108, 215, 295
Lsp1109I GCAGC 2 cut(s) 119, 220
LweI GCATC 1 cut(s) 107
MaeI CTAG 2 cut(s) 36, 320
MaeIII GTNAC 1 cut(s) 13
MalI GATC 2 cut(s) 255, 318
MboI GATC 2 cut(s) 253, 316
MboII GAAGA 3 cut(s) 167, 251, 303
MflI RGATCY 1 cut(s) 316
MluCI AATT 4 cut(s) 42, 180, 242, 270
MmeI TCCRAC 2 cut(s) 127, 284
MnlI CCTC 3 cut(s) 145, 216, 267
MroI TCCGGA 1 cut(s) 48
MseI TTAA 1 cut(s) 296
MslI CAYNNNNRTG 1 cut(s) 11
MspI CCGG 1 cut(s) 49
Mva1269I GAATGC 1 cut(s) 6
MwoI GCNNNNNNNGC 1 cut(s) 104
NdeII GATC 2 cut(s) 253, 316
NlaIII CATG 2 cut(s) 25, 35
NmuCI GTSAC 1 cut(s) 13
PctI GAATGC 1 cut(s) 6
PfeI GAWTC 1 cut(s) 226
PflFI GACNNNGTC 1 cut(s) 23
PkrI GCNGC 2 cut(s) 109, 235
PsuI RGATCY 1 cut(s) 316
PsyI GACNNNGTC 1 cut(s) 23
RseI CAYNNNNRTG 1 cut(s) 11
SaqAI TTAA 1 cut(s) 296
SatI GCNGC 2 cut(s) 108, 234
Sau3AI GATC 2 cut(s) 253, 316
SetI ASST 1 cut(s) 68
SfaNI GCATC 1 cut(s) 107
SmiMI CAYNNNNRTG 1 cut(s) 11
Sse9I AATT 4 cut(s) 42, 180, 242, 270
SsiI CCGC 3 cut(s) 137, 172, 236
SspMI CTAG 2 cut(s) 36, 320
TasI AATT 4 cut(s) 42, 180, 242, 270
TfiI GAWTC 1 cut(s) 226
Tru1I TTAA 1 cut(s) 296
Tru9I TTAA 1 cut(s) 296
TseFI GTSAC 1 cut(s) 13
TseI GCWGC 2 cut(s) 107, 233
Tsp45I GTSAC 1 cut(s) 13
TspDTI ATGAA 1 cut(s) 20
TspGWI ACGGA 1 cut(s) 278
Tth111I GACNNNGTC 1 cut(s) 23
XapI RAATTY 1 cut(s) 242
XspI CTAG 2 cut(s) 36, 320
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.