Rmu_sc0001460.1_g000058

Auxin-induced protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001460.1
OG0017723
Physical Location & Seq
Forward (+)
237063 .. 237398
336 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001460.1_g000058.1.cds

Sequence Viewer

Length: 336 bp
atgggcattcgtgtaacagacatggtcattcatgccaggcaaattatccggagacataaaagcaggtctcattccatctcatcttattcacaaccaacatcaacagcagcgttggatgttccgaaaggctattttgcggtttatgtcggtgaggaagacgagaagctgaagcgatttgtgattccgatatcctacttgaaccaccctttgttccaagacttgttgaatcaggctgcagaagaattcggttttgatcctccaacgggtaggagcggacttagaataccttgcagtgaaagccactttcttgatctcactttctgtttaaatagataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

111

Amino Acids

12.64

Weight (kDa)

7.86

Isoelectric Point (pI)

51.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017723)

Species Orthologous Gene IDs
malus_domestica MD10G1058700.v1.1
rosa_chinensis RchiOBHm_Chr5g0056751 RchiOBHm_Chr6g0269011
rosa_laevigata RLG00000013889 RLG00000035125
rosa_multiflora Rmu_sc0001460.1_g000058 Rmu_sc0004350.1_g000009
rosa_roxburghii Rroxscaffold_1G00023620 Rroxscaffold_7G00199090
rosa_rugosa Rorug06G0044600
rosa_wichuraiana Rw5G034900 Rw6G014180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 54
AccBSI CCGCTC 1 cut(s) 273
AccIII TCCGGA 1 cut(s) 48
AciI CCGC 2 cut(s) 137, 273
AclWI GGATC 1 cut(s) 248
AcsI RAATTY 1 cut(s) 242
AcuI CTGAAG 1 cut(s) 188
AfiI CCNNNNNNNGG 1 cut(s) 263
AgsI TTSAA 2 cut(s) 199, 226
AjnI CCWGG 1 cut(s) 35
AluBI AGCT 1 cut(s) 166
AluI AGCT 1 cut(s) 166
Alw26I GTCTC 2 cut(s) 46, 72
AlwI GGATC 1 cut(s) 248
Aor13HI TCCGGA 1 cut(s) 48
ApeKI GCWGC 2 cut(s) 107, 233
ApoI RAATTY 1 cut(s) 242
AsuHPI GGTGA 1 cut(s) 161
BbsI GAAGAC 1 cut(s) 162
BbvI GCAGC 2 cut(s) 119, 220
BccI CCATC 1 cut(s) 83
BciT130I CCWGG 1 cut(s) 37
BcoDI GTCTC 2 cut(s) 46, 72
BfmI CTRYAG 1 cut(s) 234
BfuAI ACCTGC 1 cut(s) 54
BisI GCNGC 2 cut(s) 108, 234
BlsI GCNGC 2 cut(s) 109, 235
Bme1390I CCNGG 1 cut(s) 37
BmrFI CCNGG 1 cut(s) 37
BpiI GAAGAC 1 cut(s) 162
BsaI GGTCTC 1 cut(s) 72
BsaWI WCCGGW 1 cut(s) 48
Bsc4I CCNNNNNNNGG 1 cut(s) 263
BseAI TCCGGA 1 cut(s) 48
BseBI CCWGG 1 cut(s) 37
BseGI GGATG 1 cut(s) 121
BseLI CCNNNNNNNGG 1 cut(s) 263
BseXI GCAGC 2 cut(s) 119, 220
BsiSI CCGG 1 cut(s) 49
BslI CCNNNNNNNGG 1 cut(s) 263
BsmAI GTCTC 2 cut(s) 46, 72
BsmI GAATGC 1 cut(s) 6
Bso31I GGTCTC 1 cut(s) 72
Bsp13I TCCGGA 1 cut(s) 48
Bsp143I GATC 2 cut(s) 253, 310
BspACI CCGC 2 cut(s) 137, 273
BspEI TCCGGA 1 cut(s) 48
BspMAI CTGCAG 1 cut(s) 238
BspMI ACCTGC 1 cut(s) 54
BspPI GGATC 1 cut(s) 248
BspTNI GGTCTC 1 cut(s) 72
BsrBI CCGCTC 1 cut(s) 273
BssMI GATC 2 cut(s) 253, 310
Bst2UI CCWGG 1 cut(s) 37
BstDEI CTNAG 1 cut(s) 278
BstF5I GGATG 1 cut(s) 121
BstKTI GATC 2 cut(s) 256, 313
BstMAI GTCTC 2 cut(s) 46, 72
BstMBI GATC 2 cut(s) 253, 310
BstMWI GCNNNNNNNGC 1 cut(s) 297
BstNI CCWGG 1 cut(s) 37
BstSCI CCNGG 1 cut(s) 35
BstSFI CTRYAG 1 cut(s) 234
BstV1I GCAGC 2 cut(s) 119, 220
BstV2I GAAGAC 1 cut(s) 162
BtsCI GGATG 1 cut(s) 121
BtsI GCAGTG 1 cut(s) 298
BtsIMutI CAGTG 1 cut(s) 298
BveI ACCTGC 1 cut(s) 54
CviAII CATG 2 cut(s) 22, 32
CviJI RGCY 4 cut(s) 129, 166, 233, 300
CviKI_1 RGCY 4 cut(s) 129, 166, 233, 300
DdeI CTNAG 1 cut(s) 278
DpnI GATC 2 cut(s) 255, 312
DpnII GATC 2 cut(s) 253, 310
DraI TTTAAA 1 cut(s) 327
Eco31I GGTCTC 1 cut(s) 72
Eco32I GATATC 1 cut(s) 189
Eco57I CTGAAG 1 cut(s) 188
EcoRI GAATTC 1 cut(s) 242
EcoRII CCWGG 1 cut(s) 35
EcoRV GATATC 1 cut(s) 189
FaeI CATG 2 cut(s) 25, 35
FaiI YATR 4 cut(s) 23, 33, 57, 144
FatI CATG 2 cut(s) 21, 31
Fnu4HI GCNGC 2 cut(s) 108, 234
FokI GGATG 1 cut(s) 128
Fsp4HI GCNGC 2 cut(s) 108, 234
GluI GCNGC 2 cut(s) 108, 234
HapII CCGG 1 cut(s) 49
Hin1II CATG 2 cut(s) 25, 35
HinfI GANTC 2 cut(s) 181, 226
HpaII CCGG 1 cut(s) 49
HphI GGTGA 1 cut(s) 161
Hpy188I TCNGA 2 cut(s) 123, 186
Hpy188III TCNNGA 2 cut(s) 49, 308
HpyCH4V TGCA 2 cut(s) 236, 291
HpyF10VI GCNNNNNNNGC 1 cut(s) 297
HpyF3I CTNAG 1 cut(s) 278
Hsp92II CATG 2 cut(s) 25, 35
Kpn2I TCCGGA 1 cut(s) 48
Kzo9I GATC 2 cut(s) 253, 310
LmnI GCTCC 1 cut(s) 270
LpnPI CCDG 5 cut(s) 22, 49, 49, 62, 215
Lsp1109I GCAGC 2 cut(s) 119, 220
MaeIII GTNAC 1 cut(s) 13
MalI GATC 2 cut(s) 255, 312
MbiI CCGCTC 1 cut(s) 273
MboI GATC 2 cut(s) 253, 310
MboII GAAGA 2 cut(s) 167, 251
MluCI AATT 2 cut(s) 42, 242
MmeI TCCRAC 2 cut(s) 93, 284
MnlI CCTC 2 cut(s) 145, 267
MroI TCCGGA 1 cut(s) 48
MseI TTAA 1 cut(s) 326
MspI CCGG 1 cut(s) 49
MspR9I CCNGG 1 cut(s) 37
Mva1269I GAATGC 1 cut(s) 6
MvaI CCWGG 1 cut(s) 37
MwoI GCNNNNNNNGC 1 cut(s) 297
NdeII GATC 2 cut(s) 253, 310
NlaIII CATG 2 cut(s) 25, 35
PctI GAATGC 1 cut(s) 6
PfeI GAWTC 2 cut(s) 181, 226
PflFI GACNNNGTC 1 cut(s) 23
PkrI GCNGC 2 cut(s) 109, 235
Psp6I CCWGG 1 cut(s) 35
PspGI CCWGG 1 cut(s) 35
PstI CTGCAG 1 cut(s) 238
PsyI GACNNNGTC 1 cut(s) 23
SaqAI TTAA 1 cut(s) 326
SatI GCNGC 2 cut(s) 108, 234
Sau3AI GATC 2 cut(s) 253, 310
ScrFI CCNGG 1 cut(s) 37
SetI ASST 3 cut(s) 68, 168, 289
SfcI CTRYAG 1 cut(s) 234
Sse9I AATT 2 cut(s) 42, 242
SsiI CCGC 2 cut(s) 137, 273
StyD4I CCNGG 1 cut(s) 35
TasI AATT 2 cut(s) 42, 242
TfiI GAWTC 2 cut(s) 181, 226
Tru1I TTAA 1 cut(s) 326
Tru9I TTAA 1 cut(s) 326
TscAI CASTG 1 cut(s) 298
TseI GCWGC 2 cut(s) 107, 233
TspDTI ATGAA 1 cut(s) 20
TspRI CASTG 1 cut(s) 298
Tth111I GACNNNGTC 1 cut(s) 23
XapI RAATTY 1 cut(s) 242
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.