Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0017723

Physical Location & Seq

Genomic Coordinates Forward (+)

26213259 .. 26214214

Gene Structure 956 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ24130

Sequence Viewer

CDS Protein Promoter (2k)

Length: 207 bp

ATGTTCCGAAAGGCTATTTTGCAGTTTGAGGAAGACAAGAAGCAGAAGCGGTTTGTGATTCCGATATCCTACTTGAACCACCCTTTGTTCCAAGACTTGTTTAATCAGGCTGCAGAAGAATTCGGTTTTGATCCTCCAACGGGTAACGGCGGACTTAGAATACCTTGCAGTGAAAGCCACTTTCTTACTTTCTGTTTAAATAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Auxin_inducible

Protein Analysis

68

Amino Acids

7.95

Weight (kDa)

6.71

Isoelectric Point (pI)

48.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Auxin_inducible	PF02519	13 - 62	2.1e-16	Auxin responsive protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0017723)

Species	Orthologous Gene IDs
malus_domestica	MD10G1058700.v1.1
rosa_chinensis	RchiOBHm_Chr5g0056751 RchiOBHm_Chr6g0269011
rosa_laevigata	RLG00000013889 RLG00000035125
rosa_multiflora	Rmu_sc0001460.1_g000058 Rmu_sc0004350.1_g000009
rosa_roxburghii	Rroxscaffold_1G00023620 Rroxscaffold_7G00199090
rosa_rugosa	Rorug06G0044600
rosa_wichuraiana	Rw5G034900 Rw6G014180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	49, 150
AclWI	GGATC	1 cut(s)	125
AcsI	RAATTY	1 cut(s)	119
AfiI	CCNNNNNNNGG	1 cut(s)	140
AgsI	TTSAA	1 cut(s)	76
AlwI	GGATC	1 cut(s)	125
ApeKI	GCWGC	1 cut(s)	110
ApoI	RAATTY	1 cut(s)	119
BbsI	GAAGAC	1 cut(s)	39
BbvI	GCAGC	1 cut(s)	97
BceAI	ACGGC	1 cut(s)	163
BfmI	CTRYAG	1 cut(s)	111
BisI	GCNGC	1 cut(s)	111
BlsI	GCNGC	1 cut(s)	112
BpiI	GAAGAC	1 cut(s)	39
Bsc4I	CCNNNNNNNGG	1 cut(s)	140
BseLI	CCNNNNNNNGG	1 cut(s)	140
BseXI	GCAGC	1 cut(s)	97
BslI	CCNNNNNNNGG	1 cut(s)	140
Bsp143I	GATC	1 cut(s)	130
BspACI	CCGC	2 cut(s)	49, 150
BspMAI	CTGCAG	1 cut(s)	115
BspPI	GGATC	1 cut(s)	125
BssMI	GATC	1 cut(s)	130
BstDEI	CTNAG	1 cut(s)	155
BstKTI	GATC	1 cut(s)	133
BstMBI	GATC	1 cut(s)	130
BstMWI	GCNNNNNNNGC	1 cut(s)	174
BstSFI	CTRYAG	1 cut(s)	111
BstV1I	GCAGC	1 cut(s)	97
BstV2I	GAAGAC	1 cut(s)	39
BtsI	GCAGTG	1 cut(s)	175
BtsIMutI	CAGTG	1 cut(s)	175
CviJI	RGCY	3 cut(s)	14, 110, 177
CviKI_1	RGCY	3 cut(s)	14, 110, 177
DdeI	CTNAG	1 cut(s)	155
DpnI	GATC	1 cut(s)	132
DpnII	GATC	1 cut(s)	130
DraI	TTTAAA	1 cut(s)	198
EciI	GGCGGA	1 cut(s)	165
Eco32I	GATATC	1 cut(s)	66
EcoRI	GAATTC	1 cut(s)	119
EcoRV	GATATC	1 cut(s)	66
Fnu4HI	GCNGC	1 cut(s)	111
Fsp4HI	GCNGC	1 cut(s)	111
GluI	GCNGC	1 cut(s)	111
HinfI	GANTC	1 cut(s)	58
Hpy188I	TCNGA	2 cut(s)	8, 63
HpyCH4V	TGCA	3 cut(s)	22, 113, 168
HpyF10VI	GCNNNNNNNGC	1 cut(s)	174
HpyF3I	CTNAG	1 cut(s)	155
Kzo9I	GATC	1 cut(s)	130
LpnPI	CCDG	1 cut(s)	92
Lsp1109I	GCAGC	1 cut(s)	97
MaeIII	GTNAC	1 cut(s)	143
MalI	GATC	1 cut(s)	132
MboI	GATC	1 cut(s)	130
MboII	GAAGA	2 cut(s)	44, 128
MluCI	AATT	1 cut(s)	119
MmeI	TCCRAC	1 cut(s)	161
MnlI	CCTC	2 cut(s)	22, 144
MseI	TTAA	2 cut(s)	102, 197
MwoI	GCNNNNNNNGC	1 cut(s)	174
NdeII	GATC	1 cut(s)	130
PfeI	GAWTC	1 cut(s)	58
PkrI	GCNGC	1 cut(s)	112
PstI	CTGCAG	1 cut(s)	115
SaqAI	TTAA	2 cut(s)	102, 197
SatI	GCNGC	1 cut(s)	111
Sau3AI	GATC	1 cut(s)	130
SetI	ASST	1 cut(s)	166
SfcI	CTRYAG	1 cut(s)	111
SgeI	CNNG	7 cut(s)	49, 85, 104, 109, 119, 153, 177
Sse9I	AATT	1 cut(s)	119
SsiI	CCGC	2 cut(s)	49, 150
TasI	AATT	1 cut(s)	119
TfiI	GAWTC	1 cut(s)	58
Tru1I	TTAA	2 cut(s)	102, 197
Tru9I	TTAA	2 cut(s)	102, 197
TscAI	CASTG	1 cut(s)	175
TseI	GCWGC	1 cut(s)	110
TspRI	CASTG	1 cut(s)	175
XapI	RAATTY	1 cut(s)	119

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.