RLG00000013889

Auxin-induced protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0017723
Physical Location & Seq
Reverse (-)
43628519 .. 43628854
336 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000013889

Sequence Viewer

Length: 336 bp
ATGGTCATTCGTGTGACAGACATGGTCATTCATGCTAGGCAAATTATCCAGAGACATAAAAGCAGGTCTCATTCCATCTCATCTTATTCGGAACCAACATCAACAGCAGCATTGGATGTTCCAAAAGGCTATTTTGTGGTTTATGTCGGAGAGGAAGACAAGAAGCAGAAGCGGTTTGTGATTCCGATATCCTACTTGAACAACCCTTTGTTCCAAGACTTGTTGAATCAGGCTGTAGAAGAATTCGGTTTTGATCTTCCAACGGGTAACCGCGGACTTAGAAAACCTTGCAGTGAAAGCCACTTTCTTGATCTCACTTTCTGTTTAAATAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

112

Amino Acids

12.76

Weight (kDa)

8.64

Isoelectric Point (pI)

43.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 16 - 106 8e-22 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017723)

Species Orthologous Gene IDs
malus_domestica MD10G1058700.v1.1
rosa_chinensis RchiOBHm_Chr5g0056751 RchiOBHm_Chr6g0269011
rosa_laevigata RLG00000013889 RLG00000035125
rosa_multiflora Rmu_sc0001460.1_g000058 Rmu_sc0004350.1_g000009
rosa_roxburghii Rroxscaffold_1G00023620 Rroxscaffold_7G00199090
rosa_rugosa Rorug06G0044600
rosa_wichuraiana Rw5G034900 Rw6G014180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 54
AccII CGCG 1 cut(s) 273
AciI CCGC 3 cut(s) 172, 271, 273
AcsI RAATTY 1 cut(s) 242
AgsI TTSAA 2 cut(s) 199, 226
Alw26I GTCTC 2 cut(s) 46, 72
ApeKI GCWGC 1 cut(s) 107
ApoI RAATTY 1 cut(s) 242
BbsI GAAGAC 1 cut(s) 162
BbvI GCAGC 1 cut(s) 119
BccI CCATC 1 cut(s) 83
BcoDI GTCTC 2 cut(s) 46, 72
BfaI CTAG 1 cut(s) 36
BfmI CTRYAG 1 cut(s) 234
BfuAI ACCTGC 1 cut(s) 54
BisI GCNGC 1 cut(s) 108
BlsI GCNGC 1 cut(s) 109
BmiI GGNNCC 1 cut(s) 93
BpiI GAAGAC 1 cut(s) 162
BsaI GGTCTC 1 cut(s) 72
BsaJI CCNNGG 1 cut(s) 271
BseDI CCNNGG 1 cut(s) 271
BseGI GGATG 1 cut(s) 121
BseXI GCAGC 1 cut(s) 119
Bsh1236I CGCG 1 cut(s) 273
BsmAI GTCTC 2 cut(s) 46, 72
Bso31I GGTCTC 1 cut(s) 72
Bsp143I GATC 2 cut(s) 253, 310
BspACI CCGC 3 cut(s) 172, 271, 273
BspFNI CGCG 1 cut(s) 273
BspLI GGNNCC 1 cut(s) 93
BspMI ACCTGC 1 cut(s) 54
BspTNI GGTCTC 1 cut(s) 72
BssECI CCNNGG 1 cut(s) 271
BssMI GATC 2 cut(s) 253, 310
BstDEI CTNAG 1 cut(s) 278
BstDSI CCRYGG 1 cut(s) 271
BstEII GGTNACC 1 cut(s) 266
BstF5I GGATG 1 cut(s) 121
BstFNI CGCG 1 cut(s) 273
BstKTI GATC 2 cut(s) 256, 313
BstMAI GTCTC 2 cut(s) 46, 72
BstMBI GATC 2 cut(s) 253, 310
BstMWI GCNNNNNNNGC 1 cut(s) 297
BstPI GGTNACC 1 cut(s) 266
BstSFI CTRYAG 1 cut(s) 234
BstUI CGCG 1 cut(s) 273
BstV1I GCAGC 1 cut(s) 119
BstV2I GAAGAC 1 cut(s) 162
BtgI CCRYGG 1 cut(s) 271
BtsCI GGATG 1 cut(s) 121
BtsI GCAGTG 1 cut(s) 298
BtsIMutI CAGTG 1 cut(s) 298
BveI ACCTGC 1 cut(s) 54
Cfr42I CCGCGG 1 cut(s) 274
CviAII CATG 2 cut(s) 22, 32
CviJI RGCY 3 cut(s) 129, 233, 300
CviKI_1 RGCY 3 cut(s) 129, 233, 300
DdeI CTNAG 1 cut(s) 278
DpnI GATC 2 cut(s) 255, 312
DpnII GATC 2 cut(s) 253, 310
DraI TTTAAA 1 cut(s) 327
Eco31I GGTCTC 1 cut(s) 72
Eco32I GATATC 1 cut(s) 189
Eco91I GGTNACC 1 cut(s) 266
EcoO65I GGTNACC 1 cut(s) 266
EcoRI GAATTC 1 cut(s) 242
EcoRV GATATC 1 cut(s) 189
FaeI CATG 2 cut(s) 25, 35
FaiI YATR 4 cut(s) 23, 33, 57, 144
FatI CATG 2 cut(s) 21, 31
Fnu4HI GCNGC 1 cut(s) 108
FokI GGATG 1 cut(s) 128
Fsp4HI GCNGC 1 cut(s) 108
FspBI CTAG 1 cut(s) 36
GluI GCNGC 1 cut(s) 108
Hin1II CATG 2 cut(s) 25, 35
HinfI GANTC 2 cut(s) 181, 226
Hpy188I TCNGA 3 cut(s) 91, 149, 186
Hpy188III TCNNGA 2 cut(s) 49, 308
HpyCH4V TGCA 1 cut(s) 291
HpyF10VI GCNNNNNNNGC 1 cut(s) 297
HpyF3I CTNAG 1 cut(s) 278
Hsp92II CATG 2 cut(s) 25, 35
KspI CCGCGG 1 cut(s) 274
Kzo9I GATC 2 cut(s) 253, 310
LpnPI CCDG 3 cut(s) 49, 62, 215
Lsp1109I GCAGC 1 cut(s) 119
MaeI CTAG 1 cut(s) 36
MaeIII GTNAC 2 cut(s) 13, 266
MalI GATC 2 cut(s) 255, 312
MboI GATC 2 cut(s) 253, 310
MboII GAAGA 3 cut(s) 167, 248, 251
MluCI AATT 2 cut(s) 42, 242
MmeI TCCRAC 2 cut(s) 127, 284
MnlI CCTC 1 cut(s) 145
MseI TTAA 1 cut(s) 326
MslI CAYNNNNRTG 1 cut(s) 11
MspA1I CMGCKG 1 cut(s) 273
MvnI CGCG 1 cut(s) 273
MwoI GCNNNNNNNGC 1 cut(s) 297
NdeII GATC 2 cut(s) 253, 310
NlaIII CATG 2 cut(s) 25, 35
NlaIV GGNNCC 1 cut(s) 93
NmuCI GTSAC 1 cut(s) 13
PfeI GAWTC 2 cut(s) 181, 226
PflFI GACNNNGTC 1 cut(s) 23
PkrI GCNGC 1 cut(s) 109
PspEI GGTNACC 1 cut(s) 266
PspN4I GGNNCC 1 cut(s) 93
PsyI GACNNNGTC 1 cut(s) 23
RseI CAYNNNNRTG 1 cut(s) 11
SacII CCGCGG 1 cut(s) 274
SaqAI TTAA 1 cut(s) 326
SatI GCNGC 1 cut(s) 108
Sau3AI GATC 2 cut(s) 253, 310
SetI ASST 2 cut(s) 68, 289
SfcI CTRYAG 1 cut(s) 234
Sfr303I CCGCGG 1 cut(s) 274
SgrBI CCGCGG 1 cut(s) 274
SmiMI CAYNNNNRTG 1 cut(s) 11
Sse9I AATT 2 cut(s) 42, 242
SsiI CCGC 3 cut(s) 172, 271, 273
SspMI CTAG 1 cut(s) 36
TasI AATT 2 cut(s) 42, 242
TfiI GAWTC 2 cut(s) 181, 226
Tru1I TTAA 1 cut(s) 326
Tru9I TTAA 1 cut(s) 326
TscAI CASTG 1 cut(s) 298
TseFI GTSAC 1 cut(s) 13
TseI GCWGC 1 cut(s) 107
Tsp45I GTSAC 1 cut(s) 13
TspDTI ATGAA 1 cut(s) 20
TspRI CASTG 1 cut(s) 298
Tth111I GACNNNGTC 1 cut(s) 23
XapI RAATTY 1 cut(s) 242
XspI CTAG 1 cut(s) 36
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.