Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0013802

Physical Location & Seq

Genomic Coordinates Forward (+)

21502659 .. 21504653

Gene Structure 1995 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1133300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGGAAGAAAAGCTTTCGAGATCAAGATTCAAGAGGGTTTGTGTGTTTTGTGGCAGCAGTACTGGGAAGAGGAACTGCTACAAAGATGCTGCCATTGAATTAGCTGAAGAGCTGGTTTCAAGGAGGCTTGACCTTGTGTATGGTGGAGGGAGCATCGGGCTGATGGGTCTGGTTTCCCAGGCTGTTTATCATGGTGGAGGGAATGTTCTTGGGATCATACCAAGAACTTTAATGTGTAAAGAGATTACAGGTGAAACAGTTGGAGAGGTAAGGCCAGTAGCCGACATGCACCAAAGGAAGGCAGAAATGGCCCGCCATTCCGATTGCTTCATTGCCCTACCAGGTGGCTATGGAACTTTGGAGGAGTTGCTAGAAGTGATCACTTGGGCACAGCTTGGAATCCATGACAAACCTGTGGGATTGCTGAATGTTGATGGATACTACAACTACCTCCTCACTTTTATTGACAAAGCCGTGGATGATGGCTTTATCAAGCCTTCCCAGCGCCACATCATAGTCTCTGCCCCCAATGCCAAAGAGCTTGTCCAAAAACTTGAGGAGTATGTGCCAGTGCATGATGGAGCCATAGCCAAAGCAAGGTGGGAGGTTGAGCAGCAGCAGCAGCAACAGGTGGTGGTGGGGTTCAATGCAGGTGCAGCTGCTGCTGCTTTGCAGACAGAGGTAGCTTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lysine_decarbox

Protein Analysis

231

Amino Acids

25.16

Weight (kDa)

5.89

Isoelectric Point (pI)

43.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LDcluster4	PF18306	18 - 143	2.5e-12	SLOG cluster4 family
Lysine_decarbox	PF03641	55 - 185	5.9e-48	Possible lysine decarboxylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013802)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35190 AT4G35190
malus_domestica	MD05G1130400.v1.1 MD10G1133300.v1.1
prunus_persica	Prupe.8G174600_v2.0.a1
pyrus_communis	pycom05g12710
rosa_chinensis	RchiOBHm_Chr6g0279791
rosa_laevigata	RLG00000013119
rosa_multiflora	Rmu_sc0002340.1_g000021
rosa_roxburghii	Rroxscaffold_7G00188650
rosa_rugosa	Rorug06G0128200 Rorug06G0128300
rosa_samantha	Rh6AG236400 Rh6BG240500 Rh6CG242800 Rh6DG234200
rosa_wichuraiana	Rw6G020600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	641
Acc36I	ACCTGC	1 cut(s)	641
AciI	CCGC	1 cut(s)	313
AclWI	GGATC	1 cut(s)	221
AcuI	CTGAAG	1 cut(s)	126
AfaI	GTAC	1 cut(s)	61
AfiI	CCNNNNNNNGG	2 cut(s)	298, 597
AgsI	TTSAA	4 cut(s)	31, 98, 120, 646
AjnI	CCWGG	2 cut(s)	177, 340
AloI	GAACNNNNNNTCC	2 cut(s)	189, 221
AluBI	AGCT	7 cut(s)	13, 104, 112, 394, 541, 659, 686
AluI	AGCT	7 cut(s)	13, 104, 112, 394, 541, 659, 686
Alw26I	GTCTC	1 cut(s)	523
AlwI	GGATC	1 cut(s)	221
AlwNI	CAGNNNCTG	1 cut(s)	662
AoxI	GGCC	2 cut(s)	272, 309
ArsI	GACNNNNNNTTYG	2 cut(s)	528, 560
AspLEI	GCGC	1 cut(s)	507
AspS9I	GGNCC	1 cut(s)	310
AsuHPI	GGTGA	1 cut(s)	263
BaeGI	GKGCMC	1 cut(s)	391
BccI	CCATC	4 cut(s)	157, 428, 476, 572
BceAI	ACGGC	1 cut(s)	458
BciT130I	CCWGG	2 cut(s)	179, 342
BciVI	GTATCC	1 cut(s)	431
BclI	TGATCA	1 cut(s)	378
BcoDI	GTCTC	1 cut(s)	523
BfaI	CTAG	1 cut(s)	371
BfoI	RGCGCY	1 cut(s)	508
BfuAI	ACCTGC	1 cut(s)	641
BfuI	GTATCC	1 cut(s)	431
BmcAI	AGTACT	1 cut(s)	61
Bme1390I	CCNGG	2 cut(s)	179, 342
BmgT120I	GGNCC	1 cut(s)	310
BmiI	GGNNCC	1 cut(s)	583
BmrFI	CCNGG	2 cut(s)	179, 342
BmrI	ACTGGG	1 cut(s)	72
BmsI	GCATC	2 cut(s)	76, 162
BmuI	ACTGGG	1 cut(s)	72
BpuEI	CTTGAG	1 cut(s)	575
BsaJI	CCNNGG	2 cut(s)	177, 474
BsaXI	ACNNNNNCTCC	2 cut(s)	189, 219
Bsc4I	CCNNNNNNNGG	2 cut(s)	298, 597
Bse1I	ACTGG	3 cut(s)	67, 275, 569
Bse3DI	GCAATG	1 cut(s)	330
BseBI	CCWGG	2 cut(s)	179, 342
BseDI	CCNNGG	2 cut(s)	177, 474
BseGI	GGATG	1 cut(s)	484
BseLI	CCNNNNNNNGG	2 cut(s)	298, 597
BseMI	GCAATG	1 cut(s)	330
BseNI	ACTGG	3 cut(s)	67, 275, 569
BseRI	GAGGAG	3 cut(s)	377, 443, 572
BseSI	GKGCMC	1 cut(s)	391
BseYI	CCCAGC	1 cut(s)	501
BsgI	GTGCAG	1 cut(s)	675
BshFI	GGCC	2 cut(s)	274, 311
BslI	CCNNNNNNNGG	2 cut(s)	298, 597
BsmAI	GTCTC	1 cut(s)	523
BsnI	GGCC	2 cut(s)	274, 311
Bsp1286I	GDGCHC	1 cut(s)	391
Bsp143I	GATC	3 cut(s)	20, 213, 378
BspACI	CCGC	1 cut(s)	313
BspANI	GGCC	2 cut(s)	274, 311
BspLI	GGNNCC	1 cut(s)	583
BspMI	ACCTGC	1 cut(s)	641
BspPI	GGATC	1 cut(s)	221
BspQI	GCTCTTC	1 cut(s)	102
BsrDI	GCAATG	1 cut(s)	330
BsrI	ACTGG	3 cut(s)	67, 275, 569
BssECI	CCNNGG	2 cut(s)	177, 474
BssMI	GATC	3 cut(s)	20, 213, 378
Bst2UI	CCWGG	2 cut(s)	179, 342
Bst4CI	ACNGT	1 cut(s)	259
Bst6I	CTCTTC	2 cut(s)	62, 102
BstAPI	GCANNNNNTGC	1 cut(s)	662
BstC8I	GCNNGC	1 cut(s)	313
BstDSI	CCRYGG	1 cut(s)	474
BstF5I	GGATG	1 cut(s)	484
BstH2I	RGCGCY	1 cut(s)	508
BstHHI	GCGC	1 cut(s)	507
BstKTI	GATC	3 cut(s)	23, 216, 381
BstMAI	GTCTC	1 cut(s)	523
BstMBI	GATC	3 cut(s)	20, 213, 378
BstMWI	GCNNNNNNNGC	8 cut(s)	308, 502, 530, 619, 622, 656, 662, 665
BstNI	CCWGG	2 cut(s)	179, 342
BstNSI	RCATGY	1 cut(s)	289
BstSCI	CCNGG	2 cut(s)	177, 340
BstSLI	GKGCMC	1 cut(s)	391
BsuI	GTATCC	1 cut(s)	431
BsuRI	GGCC	2 cut(s)	274, 311
BtgI	CCRYGG	1 cut(s)	474
BtsCI	GGATG	1 cut(s)	484
BtsIMutI	CAGTG	1 cut(s)	576
BveI	ACCTGC	1 cut(s)	641
Cac8I	GCNNGC	1 cut(s)	313
CaiI	CAGNNNCTG	1 cut(s)	662
CfoI	GCGC	1 cut(s)	507
Cfr13I	GGNCC	1 cut(s)	310
CsiI	ACCWGGT	1 cut(s)	340
Csp6I	GTAC	1 cut(s)	60
CviAII	CATG	4 cut(s)	191, 286, 404, 575
CviQI	GTAC	1 cut(s)	60
DpnI	GATC	3 cut(s)	22, 215, 380
DpnII	GATC	3 cut(s)	20, 213, 378
Eam1104I	CTCTTC	2 cut(s)	62, 102
EarI	CTCTTC	2 cut(s)	62, 102
Eco57I	CTGAAG	1 cut(s)	126
EcoRII	CCWGG	2 cut(s)	177, 340
FaeI	CATG	4 cut(s)	194, 289, 407, 578
FalI	AAGNNNNNCTT	1 cut(s)	29
FatI	CATG	4 cut(s)	190, 285, 403, 574
FauI	CCCGC	1 cut(s)	320
FbaI	TGATCA	1 cut(s)	378
FokI	GGATG	1 cut(s)	491
FspBI	CTAG	1 cut(s)	371
GlaI	GCGC	1 cut(s)	506
GsaI	CCCAGC	1 cut(s)	505
HaeII	RGCGCY	1 cut(s)	508
HaeIII	GGCC	2 cut(s)	274, 311
HhaI	GCGC	1 cut(s)	507
Hin1II	CATG	4 cut(s)	194, 289, 407, 578
Hin6I	GCGC	1 cut(s)	505
HinP1I	GCGC	1 cut(s)	505
HindIII	AAGCTT	1 cut(s)	11
HinfI	GANTC	2 cut(s)	27, 399
HphI	GGTGA	1 cut(s)	263
Hpy188I	TCNGA	1 cut(s)	322
Hpy188III	TCNNGA	3 cut(s)	18, 24, 31
HpyAV	CCTTC	2 cut(s)	292, 507
HpyCH4III	ACNGT	1 cut(s)	259
HpyCH4V	TGCA	5 cut(s)	289, 574, 650, 656, 673
HpyF10VI	GCNNNNNNNGC	8 cut(s)	308, 502, 530, 619, 622, 656, 662, 665
Hsp92II	CATG	4 cut(s)	194, 289, 407, 578
HspAI	GCGC	1 cut(s)	505
Ksp22I	TGATCA	1 cut(s)	378
Kzo9I	GATC	3 cut(s)	20, 213, 378
LguI	GCTCTTC	1 cut(s)	102
LmnI	GCTCC	2 cut(s)	150, 581
LweI	GCATC	2 cut(s)	76, 162
MabI	ACCWGGT	1 cut(s)	340
MaeI	CTAG	1 cut(s)	371
MalI	GATC	3 cut(s)	22, 215, 380
MboI	GATC	3 cut(s)	20, 213, 378
MboII	GAAGA	3 cut(s)	17, 79, 119
MhlI	GDGCHC	1 cut(s)	391
MluCI	AATT	1 cut(s)	98
MmeI	TCCRAC	1 cut(s)	241
MseI	TTAA	1 cut(s)	230
MspA1I	CMGCKG	1 cut(s)	659
MspR9I	CCNGG	2 cut(s)	179, 342
MvaI	CCWGG	2 cut(s)	179, 342
MwoI	GCNNNNNNNGC	8 cut(s)	308, 502, 530, 619, 622, 656, 662, 665
NdeII	GATC	3 cut(s)	20, 213, 378
NlaIII	CATG	4 cut(s)	194, 289, 407, 578
NlaIV	GGNNCC	1 cut(s)	583
NspI	RCATGY	1 cut(s)	289
PaqCI	CACCTGC	1 cut(s)	641
PciSI	GCTCTTC	1 cut(s)	102
PfeI	GAWTC	2 cut(s)	27, 399
Psp6I	CCWGG	2 cut(s)	177, 340
PspFI	CCCAGC	1 cut(s)	501
PspGI	CCWGG	2 cut(s)	177, 340
PspN4I	GGNNCC	1 cut(s)	583
PspPI	GGNCC	1 cut(s)	310
PstNI	CAGNNNCTG	1 cut(s)	662
PvuII	CAGCTG	1 cut(s)	659
RsaI	GTAC	1 cut(s)	61
RsaNI	GTAC	1 cut(s)	60
SapI	GCTCTTC	1 cut(s)	102
SaqAI	TTAA	1 cut(s)	230
Sau3AI	GATC	3 cut(s)	20, 213, 378
Sau96I	GGNCC	1 cut(s)	310
ScaI	AGTACT	1 cut(s)	61
ScrFI	CCNGG	2 cut(s)	179, 342
SduI	GDGCHC	1 cut(s)	391
SexAI	ACCWGGT	1 cut(s)	340
SfaNI	GCATC	2 cut(s)	76, 162
SmlI	CTYRAG	1 cut(s)	554
SmoI	CTYRAG	1 cut(s)	554
Sse9I	AATT	1 cut(s)	98
SsiI	CCGC	1 cut(s)	313
SspMI	CTAG	1 cut(s)	371
StyD4I	CCNGG	2 cut(s)	177, 340
TaaI	ACNGT	1 cut(s)	259
TaqI	TCGA	1 cut(s)	17
TasI	AATT	1 cut(s)	98
TatI	WGTACW	1 cut(s)	59
TfiI	GAWTC	2 cut(s)	27, 399
Tru1I	TTAA	1 cut(s)	230
Tru9I	TTAA	1 cut(s)	230
TscAI	CASTG	1 cut(s)	576
TspDTI	ATGAA	1 cut(s)	319
TspRI	CASTG	1 cut(s)	576
XceI	RCATGY	1 cut(s)	289
XspI	CTAG	1 cut(s)	371
ZrmI	AGTACT	1 cut(s)	61

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.