Rh6AG236400
NAC Family

Cytokinin-activating enzyme working in the direct activation pathway. Phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
Physical Location & Seq
Forward (+)
42135926 .. 42138360
2435 bp
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UTR
Exon/CDS
Intron
Rh6AG236400.1

Sequence Viewer

Length: 477 bp
ATGGAAGAGGAGGAGGCTGTGAGGTCAAGATTCAAGAGGGTTTGTGTGTTTTGTGGAAGCAGTACTGGGAAGAGGGAATGTTACAAAGATGCTGCCATAGAATTAGGCCAAGAGCTGGTGTCAAGGAGGCTGGACCTTGTCTATGGAGGTGGAAGCATTGGACTGATGGGTTTGGTTTCACAGGCTGTGCATGATGGTGGAGGCAAAGTTCTTGGGATCATCCCCAGGCCTCTAATGGGTGCAGAGATAACAGGTGAAACAGTTGGGGAGGAAAGGTCTGTAACCGACATGCACCAAAGGAAGGCTGAAATGGCCCGCCATTCTGATTGTTTTATAGCATTACCAGGTGGGTATGGAACTTTGGAAGAGTTGCTGGAAGTGATAGCTTGGTCCCAGCTTGGTATCCATGACAAACCTGTAAGAGAACATATTATGATACTGAAAAACCCCCACCACAAGCACAAGAAGAGTCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

158

Amino Acids

17.44

Weight (kDa)

6.75

Isoelectric Point (pI)

55.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LDcluster4 PF18306 19 - 125 8.9e-14 SLOG cluster4 family
Lysine_decarbox PF03641 56 - 140 7e-31 Possible lysine decarboxylase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0013802)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 115
AciI CCGC 1 cut(s) 316
AclWI GGATC 1 cut(s) 224
AfaI GTAC 1 cut(s) 64
AfiI CCNNNNNNNGG 3 cut(s) 115, 236, 301
AgsI TTSAA 1 cut(s) 34
AjnI CCWGG 2 cut(s) 224, 343
AloI GAACNNNNNNTCC 2 cut(s) 192, 224
AluBI AGCT 3 cut(s) 115, 386, 397
AluI AGCT 3 cut(s) 115, 386, 397
AlwI GGATC 1 cut(s) 224
AoxI GGCC 3 cut(s) 106, 227, 312
ApeKI GCWGC 1 cut(s) 92
AspS9I GGNCC 3 cut(s) 133, 313, 390
AsuHPI GGTGA 1 cut(s) 266
AvaII GGWCC 2 cut(s) 133, 390
BbvI GCAGC 1 cut(s) 79
BccI CCATC 2 cut(s) 160, 188
BciT130I CCWGG 2 cut(s) 226, 345
BciVI GTATCC 1 cut(s) 413
BfuI GTATCC 1 cut(s) 413
BisI GCNGC 1 cut(s) 93
BlsI GCNGC 1 cut(s) 94
BmcAI AGTACT 1 cut(s) 64
Bme1390I CCNGG 2 cut(s) 226, 345
Bme18I GGWCC 2 cut(s) 133, 390
BmgT120I GGNCC 3 cut(s) 133, 313, 390
BmiI GGNNCC 1 cut(s) 392
BmrFI CCNGG 2 cut(s) 226, 345
BmrI ACTGGG 1 cut(s) 75
BmsI GCATC 1 cut(s) 79
BmuI ACTGGG 1 cut(s) 75
BsaJI CCNNGG 1 cut(s) 224
BsaXI ACNNNNNCTCC 4 cut(s) 192, 222, 260, 290
Bsc4I CCNNNNNNNGG 3 cut(s) 115, 236, 301
Bse1I ACTGG 1 cut(s) 70
BseBI CCWGG 2 cut(s) 226, 345
BseDI CCNNGG 1 cut(s) 224
BseGI GGATG 1 cut(s) 219
BseLI CCNNNNNNNGG 3 cut(s) 115, 236, 301
BseNI ACTGG 1 cut(s) 70
BseRI GAGGAG 2 cut(s) 23, 26
BseXI GCAGC 1 cut(s) 79
BseYI CCCAGC 1 cut(s) 393
BsgI GTGCAG 1 cut(s) 261
BshFI GGCC 3 cut(s) 108, 229, 314
BslFI GGGAC 1 cut(s) 376
BslI CCNNNNNNNGG 3 cut(s) 115, 236, 301
BsmFI GGGAC 1 cut(s) 376
BsnI GGCC 3 cut(s) 108, 229, 314
Bsp143I GATC 1 cut(s) 216
BspACI CCGC 1 cut(s) 316
BspANI GGCC 3 cut(s) 108, 229, 314
BspLI GGNNCC 1 cut(s) 392
BspPI GGATC 1 cut(s) 224
BsrI ACTGG 1 cut(s) 70
BssECI CCNNGG 1 cut(s) 224
BssMI GATC 1 cut(s) 216
Bst2UI CCWGG 2 cut(s) 226, 345
Bst4CI ACNGT 1 cut(s) 262
Bst6I CTCTTC 3 cut(s) 65, 360, 461
BstC8I GCNNGC 1 cut(s) 316
BstF5I GGATG 1 cut(s) 219
BstKTI GATC 1 cut(s) 219
BstMBI GATC 1 cut(s) 216
BstMWI GCNNNNNNNGC 1 cut(s) 311
BstNI CCWGG 2 cut(s) 226, 345
BstNSI RCATGY 1 cut(s) 292
BstSCI CCNGG 2 cut(s) 224, 343
BstV1I GCAGC 1 cut(s) 79
BsuI GTATCC 1 cut(s) 413
BsuRI GGCC 3 cut(s) 108, 229, 314
BtsCI GGATG 1 cut(s) 219
Cac8I GCNNGC 1 cut(s) 316
Cfr13I GGNCC 3 cut(s) 133, 313, 390
CsiI ACCWGGT 1 cut(s) 343
Csp6I GTAC 1 cut(s) 63
CviAII CATG 3 cut(s) 191, 289, 407
CviQI GTAC 1 cut(s) 63
DpnI GATC 1 cut(s) 218
DpnII GATC 1 cut(s) 216
Eam1104I CTCTTC 3 cut(s) 65, 360, 461
EarI CTCTTC 3 cut(s) 65, 360, 461
Eco147I AGGCCT 1 cut(s) 229
Eco47I GGWCC 2 cut(s) 133, 390
EcoRII CCWGG 2 cut(s) 224, 343
FaeI CATG 3 cut(s) 194, 292, 410
FaiI YATR 9 cut(s) 98, 144, 192, 290, 335, 354, 408, 429, 434
FaqI GGGAC 1 cut(s) 376
FatI CATG 3 cut(s) 190, 288, 406
FauI CCCGC 1 cut(s) 323
Fnu4HI GCNGC 1 cut(s) 93
FokI GGATG 1 cut(s) 206
Fsp4HI GCNGC 1 cut(s) 93
GluI GCNGC 1 cut(s) 93
GsaI CCCAGC 1 cut(s) 397
HaeIII GGCC 3 cut(s) 108, 229, 314
Hin1II CATG 3 cut(s) 194, 292, 410
HinfI GANTC 2 cut(s) 30, 469
HphI GGTGA 1 cut(s) 266
Hpy188I TCNGA 1 cut(s) 325
Hpy188III TCNNGA 2 cut(s) 27, 34
HpyAV CCTTC 1 cut(s) 295
HpyCH4III ACNGT 1 cut(s) 262
HpyCH4V TGCA 3 cut(s) 190, 242, 292
HpyF10VI GCNNNNNNNGC 1 cut(s) 311
Hsp92II CATG 3 cut(s) 194, 292, 410
Kzo9I GATC 1 cut(s) 216
Lsp1109I GCAGC 1 cut(s) 79
LweI GCATC 1 cut(s) 79
MabI ACCWGGT 1 cut(s) 343
MaeIII GTNAC 2 cut(s) 80, 280
MalI GATC 1 cut(s) 218
MboI GATC 1 cut(s) 216
MboII GAAGA 3 cut(s) 17, 82, 377
MluCI AATT 1 cut(s) 101
MslI CAYNNNNRTG 1 cut(s) 195
MspR9I CCNGG 2 cut(s) 226, 345
MvaI CCWGG 2 cut(s) 226, 345
MwoI GCNNNNNNNGC 1 cut(s) 311
NdeII GATC 1 cut(s) 216
NlaIII CATG 3 cut(s) 194, 292, 410
NlaIV GGNNCC 1 cut(s) 392
NspI RCATGY 1 cut(s) 292
PceI AGGCCT 1 cut(s) 229
PfeI GAWTC 1 cut(s) 30
PflFI GACNNNGTC 1 cut(s) 137
PflMI CCANNNNNTGG 1 cut(s) 115
PkrI GCNGC 1 cut(s) 94
Psp6I CCWGG 2 cut(s) 224, 343
PspFI CCCAGC 1 cut(s) 393
PspGI CCWGG 2 cut(s) 224, 343
PspN4I GGNNCC 1 cut(s) 392
PspPI GGNCC 3 cut(s) 133, 313, 390
PsyI GACNNNGTC 1 cut(s) 137
RsaI GTAC 1 cut(s) 64
RsaNI GTAC 1 cut(s) 63
RseI CAYNNNNRTG 1 cut(s) 195
SatI GCNGC 1 cut(s) 93
Sau3AI GATC 1 cut(s) 216
Sau96I GGNCC 3 cut(s) 133, 313, 390
ScaI AGTACT 1 cut(s) 64
ScrFI CCNGG 2 cut(s) 226, 345
SexAI ACCWGGT 1 cut(s) 343
SfaNI GCATC 1 cut(s) 79
SinI GGWCC 2 cut(s) 133, 390
SmiMI CAYNNNNRTG 1 cut(s) 195
Sse9I AATT 1 cut(s) 101
SseBI AGGCCT 1 cut(s) 229
SsiI CCGC 1 cut(s) 316
StuI AGGCCT 1 cut(s) 229
StyD4I CCNGG 2 cut(s) 224, 343
TaaI ACNGT 1 cut(s) 262
TasI AATT 1 cut(s) 101
TatI WGTACW 1 cut(s) 62
TfiI GAWTC 1 cut(s) 30
TseI GCWGC 1 cut(s) 92
Tth111I GACNNNGTC 1 cut(s) 137
Van91I CCANNNNNTGG 1 cut(s) 115
VpaK11BI GGWCC 2 cut(s) 133, 390
XceI RCATGY 1 cut(s) 292
XcmI CCANNNNNNNNNTGG 1 cut(s) 232
ZrmI AGTACT 1 cut(s) 64
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.