Rh6CG242800
NAC Family

Cytokinin-activating enzyme working in the direct activation pathway. Phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
Physical Location & Seq
Forward (+)
40906341 .. 40908270
1930 bp
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UTR
Exon/CDS
Intron
Rh6CG242800.1

Sequence Viewer

Length: 648 bp
ATGGAAGAGGAGGAGGCTGTGAGGTCAAGATTCAAGAGGGTTTGTGTGTTTTGTGGAAGCAGTACTGGGAAGAGGGAATGTTACAAAGATGCTGCCATAGAATTAGGCCAAGAGCTGGTGTCAAGGAGGCTGGACCTTGTCTATGGAGGTGGAAGCATTGGACTGATGGGTTTGGTTTCACAGGCTGTGCATGATGGTGGAGGCAAAGTTCTTGGGATCATCCCCAGGCCTCTAATGGGTGCAGAGATAACAGGTGAAACAGTTGGGGAGGAAAGGTCTGTAACCGACATGCACCAAAGGAAGGCTGAAATGGCCCGCCATTCTGATTGTTTTATAGCATTACCAGGTGGGTATGGAACTTTGGAAGAGTTGCTGGAAGTGATAGCTTGGTCCCAGCTTGGTATCCATGACAAACCTGTTGGTTTGCTCAATGTTGATGGCTACTACGACTACCTCCTCACTTTTATTGACAAAGCCGTGGATGATGGCTTTATTGAGCCTTCCCAGCGCCACATCATAGTCTCTGCCACCAATGCCAAGGAGCTTGTTGAAAAACTTGAGGAGTATGTGCCAGTGCATGATGGAGCCATAGCCAAAGCAAGTTGGGAGGTTCAGCAACAAGAACAGCAGGAGAAACAACAGTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

215

Amino Acids

23.77

Weight (kDa)

4.91

Isoelectric Point (pI)

54.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LDcluster4 PF18306 19 - 144 4.3e-14 SLOG cluster4 family
Lysine_decarbox PF03641 56 - 186 2e-47 Possible lysine decarboxylase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0013802)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 115
AciI CCGC 1 cut(s) 316
AclWI GGATC 1 cut(s) 224
AfaI GTAC 1 cut(s) 64
AfiI CCNNNNNNNGG 3 cut(s) 115, 236, 301
AgsI TTSAA 2 cut(s) 34, 551
AjnI CCWGG 2 cut(s) 224, 343
AloI GAACNNNNNNTCC 2 cut(s) 192, 224
AluBI AGCT 4 cut(s) 115, 386, 397, 544
AluI AGCT 4 cut(s) 115, 386, 397, 544
Alw26I GTCTC 1 cut(s) 526
AlwI GGATC 1 cut(s) 224
AoxI GGCC 3 cut(s) 106, 227, 312
ApeKI GCWGC 1 cut(s) 92
AspLEI GCGC 1 cut(s) 510
AspS9I GGNCC 3 cut(s) 133, 313, 390
AsuHPI GGTGA 1 cut(s) 266
AvaII GGWCC 2 cut(s) 133, 390
BbvI GCAGC 1 cut(s) 79
BccI CCATC 5 cut(s) 160, 188, 431, 479, 575
BceAI ACGGC 1 cut(s) 461
BciT130I CCWGG 2 cut(s) 226, 345
BciVI GTATCC 1 cut(s) 413
BcoDI GTCTC 1 cut(s) 526
BfoI RGCGCY 1 cut(s) 511
BfuI GTATCC 1 cut(s) 413
BisI GCNGC 1 cut(s) 93
BlsI GCNGC 1 cut(s) 94
BmcAI AGTACT 1 cut(s) 64
Bme1390I CCNGG 2 cut(s) 226, 345
Bme18I GGWCC 2 cut(s) 133, 390
BmgT120I GGNCC 3 cut(s) 133, 313, 390
BmiI GGNNCC 2 cut(s) 392, 586
BmrFI CCNGG 2 cut(s) 226, 345
BmrI ACTGGG 1 cut(s) 75
BmsI GCATC 1 cut(s) 79
BmuI ACTGGG 1 cut(s) 75
BpuEI CTTGAG 1 cut(s) 578
BsaJI CCNNGG 3 cut(s) 224, 477, 537
BsaXI ACNNNNNCTCC 4 cut(s) 192, 222, 260, 290
Bsc4I CCNNNNNNNGG 3 cut(s) 115, 236, 301
Bse1I ACTGG 2 cut(s) 70, 572
BseBI CCWGG 2 cut(s) 226, 345
BseDI CCNNGG 3 cut(s) 224, 477, 537
BseGI GGATG 2 cut(s) 219, 487
BseLI CCNNNNNNNGG 3 cut(s) 115, 236, 301
BseNI ACTGG 2 cut(s) 70, 572
BseRI GAGGAG 4 cut(s) 23, 26, 446, 575
BseXI GCAGC 1 cut(s) 79
BseYI CCCAGC 2 cut(s) 393, 504
BsgI GTGCAG 1 cut(s) 261
BshFI GGCC 3 cut(s) 108, 229, 314
BslFI GGGAC 1 cut(s) 376
BslI CCNNNNNNNGG 3 cut(s) 115, 236, 301
BsmAI GTCTC 1 cut(s) 526
BsmFI GGGAC 1 cut(s) 376
BsnI GGCC 3 cut(s) 108, 229, 314
Bsp143I GATC 1 cut(s) 216
BspACI CCGC 1 cut(s) 316
BspANI GGCC 3 cut(s) 108, 229, 314
BspLI GGNNCC 2 cut(s) 392, 586
BspPI GGATC 1 cut(s) 224
BsrI ACTGG 2 cut(s) 70, 572
BssECI CCNNGG 3 cut(s) 224, 477, 537
BssMI GATC 1 cut(s) 216
BssT1I CCWWGG 1 cut(s) 537
Bst2UI CCWGG 2 cut(s) 226, 345
Bst4CI ACNGT 2 cut(s) 262, 642
Bst6I CTCTTC 2 cut(s) 65, 360
BstC8I GCNNGC 1 cut(s) 316
BstDSI CCRYGG 1 cut(s) 477
BstF5I GGATG 2 cut(s) 219, 487
BstH2I RGCGCY 1 cut(s) 511
BstHHI GCGC 1 cut(s) 510
BstKTI GATC 1 cut(s) 219
BstMAI GTCTC 1 cut(s) 526
BstMBI GATC 1 cut(s) 216
BstMWI GCNNNNNNNGC 3 cut(s) 311, 505, 533
BstNI CCWGG 2 cut(s) 226, 345
BstNSI RCATGY 1 cut(s) 292
BstSCI CCNGG 2 cut(s) 224, 343
BstV1I GCAGC 1 cut(s) 79
BsuI GTATCC 1 cut(s) 413
BsuRI GGCC 3 cut(s) 108, 229, 314
BtgI CCRYGG 1 cut(s) 477
BtsCI GGATG 2 cut(s) 219, 487
BtsIMutI CAGTG 1 cut(s) 579
Cac8I GCNNGC 1 cut(s) 316
CfoI GCGC 1 cut(s) 510
Cfr13I GGNCC 3 cut(s) 133, 313, 390
CsiI ACCWGGT 1 cut(s) 343
Csp6I GTAC 1 cut(s) 63
CviAII CATG 4 cut(s) 191, 289, 407, 578
CviQI GTAC 1 cut(s) 63
DpnI GATC 1 cut(s) 218
DpnII GATC 1 cut(s) 216
Eam1104I CTCTTC 2 cut(s) 65, 360
EarI CTCTTC 2 cut(s) 65, 360
Eco130I CCWWGG 1 cut(s) 537
Eco147I AGGCCT 1 cut(s) 229
Eco47I GGWCC 2 cut(s) 133, 390
EcoRII CCWGG 2 cut(s) 224, 343
EcoT14I CCWWGG 1 cut(s) 537
ErhI CCWWGG 1 cut(s) 537
FaeI CATG 4 cut(s) 194, 292, 410, 581
FaqI GGGAC 1 cut(s) 376
FatI CATG 4 cut(s) 190, 288, 406, 577
FauI CCCGC 1 cut(s) 323
Fnu4HI GCNGC 1 cut(s) 93
FokI GGATG 2 cut(s) 206, 494
Fsp4HI GCNGC 1 cut(s) 93
GlaI GCGC 1 cut(s) 509
GluI GCNGC 1 cut(s) 93
GsaI CCCAGC 2 cut(s) 397, 508
HaeII RGCGCY 1 cut(s) 511
HaeIII GGCC 3 cut(s) 108, 229, 314
HhaI GCGC 1 cut(s) 510
Hin1II CATG 4 cut(s) 194, 292, 410, 581
Hin6I GCGC 1 cut(s) 508
HinP1I GCGC 1 cut(s) 508
HinfI GANTC 1 cut(s) 30
HphI GGTGA 1 cut(s) 266
Hpy188I TCNGA 1 cut(s) 325
Hpy188III TCNNGA 2 cut(s) 27, 34
HpyAV CCTTC 2 cut(s) 295, 510
HpyCH4III ACNGT 2 cut(s) 262, 642
HpyCH4V TGCA 4 cut(s) 190, 242, 292, 577
HpyF10VI GCNNNNNNNGC 3 cut(s) 311, 505, 533
Hsp92II CATG 4 cut(s) 194, 292, 410, 581
HspAI GCGC 1 cut(s) 508
Kzo9I GATC 1 cut(s) 216
LmnI GCTCC 2 cut(s) 541, 584
Lsp1109I GCAGC 1 cut(s) 79
LweI GCATC 1 cut(s) 79
MabI ACCWGGT 1 cut(s) 343
MaeIII GTNAC 2 cut(s) 80, 280
MalI GATC 1 cut(s) 218
MboI GATC 1 cut(s) 216
MboII GAAGA 3 cut(s) 17, 82, 377
MluCI AATT 1 cut(s) 101
MseI TTAA 1 cut(s) 646
MslI CAYNNNNRTG 1 cut(s) 195
MspR9I CCNGG 2 cut(s) 226, 345
MvaI CCWGG 2 cut(s) 226, 345
MwoI GCNNNNNNNGC 3 cut(s) 311, 505, 533
NdeII GATC 1 cut(s) 216
NlaIII CATG 4 cut(s) 194, 292, 410, 581
NlaIV GGNNCC 2 cut(s) 392, 586
NspI RCATGY 1 cut(s) 292
PceI AGGCCT 1 cut(s) 229
PfeI GAWTC 1 cut(s) 30
PflFI GACNNNGTC 1 cut(s) 137
PflMI CCANNNNNTGG 1 cut(s) 115
PkrI GCNGC 1 cut(s) 94
Psp6I CCWGG 2 cut(s) 224, 343
PspFI CCCAGC 2 cut(s) 393, 504
PspGI CCWGG 2 cut(s) 224, 343
PspN4I GGNNCC 2 cut(s) 392, 586
PspPI GGNCC 3 cut(s) 133, 313, 390
PsyI GACNNNGTC 1 cut(s) 137
RsaI GTAC 1 cut(s) 64
RsaNI GTAC 1 cut(s) 63
RseI CAYNNNNRTG 1 cut(s) 195
SaqAI TTAA 1 cut(s) 646
SatI GCNGC 1 cut(s) 93
Sau3AI GATC 1 cut(s) 216
Sau96I GGNCC 3 cut(s) 133, 313, 390
ScaI AGTACT 1 cut(s) 64
ScrFI CCNGG 2 cut(s) 226, 345
SexAI ACCWGGT 1 cut(s) 343
SfaNI GCATC 1 cut(s) 79
SinI GGWCC 2 cut(s) 133, 390
SmiMI CAYNNNNRTG 1 cut(s) 195
SmlI CTYRAG 1 cut(s) 557
SmoI CTYRAG 1 cut(s) 557
Sse9I AATT 1 cut(s) 101
SseBI AGGCCT 1 cut(s) 229
SsiI CCGC 1 cut(s) 316
StuI AGGCCT 1 cut(s) 229
StyD4I CCNGG 2 cut(s) 224, 343
StyI CCWWGG 1 cut(s) 537
TaaI ACNGT 2 cut(s) 262, 642
TasI AATT 1 cut(s) 101
TatI WGTACW 1 cut(s) 62
TfiI GAWTC 1 cut(s) 30
Tru1I TTAA 1 cut(s) 646
Tru9I TTAA 1 cut(s) 646
TscAI CASTG 1 cut(s) 579
TseI GCWGC 1 cut(s) 92
TspRI CASTG 1 cut(s) 579
Tth111I GACNNNGTC 1 cut(s) 137
Van91I CCANNNNNTGG 1 cut(s) 115
VpaK11BI GGWCC 2 cut(s) 133, 390
XceI RCATGY 1 cut(s) 292
XcmI CCANNNNNNNNNTGG 1 cut(s) 232
ZrmI AGTACT 1 cut(s) 64
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.