Rroxscaffold_7G00188650
NAC Family

Cytokinin-activating enzyme working in the direct activation pathway. Phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
Physical Location & Seq
Reverse (-)
28241819 .. 28243742
1924 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00188650.1

Sequence Viewer

Length: 567 bp
ATGGAAGAGGAGGAGGCTGTGAGGTCAAGATTCAAGAGGGTTTGTGTGTTTTGTGGAAGCAGTACTGGGAAGAGGGAATGTTACAAAGATGCTGCCATAGAGTTAGGCCAAGAGCTGGTGTCAAGGAGGCTGGACCTTGTCTATGGAGGTGGAAGCATTGGACTGATGGGTTTGGTTTCACAGGCTGTGCATGATGGTGGAGGCAAAGTTCTTGGGATCATCCCCAGGCCTCTAATGGGTGCAGAGATAACAGGTGAAACAGTTGGGGAGGAAAGGTCTGTAACCGACATGCACCAAAGGAAGGCTGAAATGGCCCGCCATTCTGATTGTTTTATAGCATTACCAGGTGGGTATGGAACTTTGGAAGAGTTGCTGGAAGTGATAGCTTGGTCCCAGCTTGGTATCCATGACAAACCTGAGTATGTGCCAGTGCATGATGGAGCCATAGCCAAAGCAAGTTGGGAGGTTCAGCAACAAGAACAGCAGGAGAAACAACAGGTGGGGTTCAATGTTGCTTCTGCAGCTGCTGCATCTGCTACTACTTTGCAGACTGAGATAGCTTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

188

Amino Acids

20.32

Weight (kDa)

5.06

Isoelectric Point (pI)

56.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LDcluster4 PF18306 19 - 126 1.5e-13 SLOG cluster4 family
Lysine_decarbox PF03641 56 - 139 4.3e-30 Possible lysine decarboxylase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0013802)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 115
AciI CCGC 1 cut(s) 316
AclWI GGATC 1 cut(s) 224
AfaI GTAC 1 cut(s) 64
AfiI CCNNNNNNNGG 3 cut(s) 115, 236, 301
AgsI TTSAA 2 cut(s) 34, 508
AjnI CCWGG 2 cut(s) 224, 343
AloI GAACNNNNNNTCC 2 cut(s) 192, 224
AluBI AGCT 5 cut(s) 115, 386, 397, 524, 560
AluI AGCT 5 cut(s) 115, 386, 397, 524, 560
AlwI GGATC 1 cut(s) 224
AlwNI CAGNNNCTG 1 cut(s) 527
AoxI GGCC 3 cut(s) 106, 227, 312
ApeKI GCWGC 4 cut(s) 92, 521, 524, 527
AspS9I GGNCC 3 cut(s) 133, 313, 390
AsuHPI GGTGA 1 cut(s) 266
AvaII GGWCC 2 cut(s) 133, 390
BbvI GCAGC 4 cut(s) 79, 511, 514, 533
BccI CCATC 3 cut(s) 160, 188, 431
BciT130I CCWGG 2 cut(s) 226, 345
BciVI GTATCC 1 cut(s) 413
BfmI CTRYAG 1 cut(s) 519
BfuI GTATCC 1 cut(s) 413
BisI GCNGC 4 cut(s) 93, 522, 525, 528
BlsI GCNGC 4 cut(s) 94, 523, 526, 529
BmcAI AGTACT 1 cut(s) 64
Bme1390I CCNGG 2 cut(s) 226, 345
Bme18I GGWCC 2 cut(s) 133, 390
BmgT120I GGNCC 3 cut(s) 133, 313, 390
BmiI GGNNCC 2 cut(s) 392, 442
BmrFI CCNGG 2 cut(s) 226, 345
BmrI ACTGGG 1 cut(s) 75
BmsI GCATC 2 cut(s) 79, 539
BmuI ACTGGG 1 cut(s) 75
BsaJI CCNNGG 1 cut(s) 224
BsaXI ACNNNNNCTCC 4 cut(s) 192, 222, 260, 290
Bsc4I CCNNNNNNNGG 3 cut(s) 115, 236, 301
Bse1I ACTGG 2 cut(s) 70, 428
BseBI CCWGG 2 cut(s) 226, 345
BseDI CCNNGG 1 cut(s) 224
BseGI GGATG 1 cut(s) 219
BseLI CCNNNNNNNGG 3 cut(s) 115, 236, 301
BseMII CTCAG 2 cut(s) 408, 543
BseNI ACTGG 2 cut(s) 70, 428
BseRI GAGGAG 2 cut(s) 23, 26
BseXI GCAGC 4 cut(s) 79, 511, 514, 533
BseYI CCCAGC 1 cut(s) 393
BsgI GTGCAG 1 cut(s) 261
BshFI GGCC 3 cut(s) 108, 229, 314
BslFI GGGAC 1 cut(s) 376
BslI CCNNNNNNNGG 3 cut(s) 115, 236, 301
BsmFI GGGAC 1 cut(s) 376
BsnI GGCC 3 cut(s) 108, 229, 314
Bsp143I GATC 1 cut(s) 216
BspACI CCGC 1 cut(s) 316
BspANI GGCC 3 cut(s) 108, 229, 314
BspCNI CTCAG 2 cut(s) 409, 544
BspLI GGNNCC 2 cut(s) 392, 442
BspMAI CTGCAG 1 cut(s) 523
BspPI GGATC 1 cut(s) 224
BsrI ACTGG 2 cut(s) 70, 428
BssECI CCNNGG 1 cut(s) 224
BssMI GATC 1 cut(s) 216
Bst2UI CCWGG 2 cut(s) 226, 345
Bst4CI ACNGT 1 cut(s) 262
Bst6I CTCTTC 2 cut(s) 65, 360
BstAPI GCANNNNNTGC 1 cut(s) 527
BstC8I GCNNGC 1 cut(s) 316
BstDEI CTNAG 2 cut(s) 417, 552
BstF5I GGATG 1 cut(s) 219
BstKTI GATC 1 cut(s) 219
BstMBI GATC 1 cut(s) 216
BstMWI GCNNNNNNNGC 4 cut(s) 311, 521, 527, 533
BstNI CCWGG 2 cut(s) 226, 345
BstNSI RCATGY 1 cut(s) 292
BstSCI CCNGG 2 cut(s) 224, 343
BstSFI CTRYAG 1 cut(s) 519
BstV1I GCAGC 4 cut(s) 79, 511, 514, 533
BsuI GTATCC 1 cut(s) 413
BsuRI GGCC 3 cut(s) 108, 229, 314
BtsCI GGATG 1 cut(s) 219
BtsIMutI CAGTG 1 cut(s) 435
Cac8I GCNNGC 1 cut(s) 316
CaiI CAGNNNCTG 1 cut(s) 527
Cfr13I GGNCC 3 cut(s) 133, 313, 390
CsiI ACCWGGT 1 cut(s) 343
Csp6I GTAC 1 cut(s) 63
CviAII CATG 4 cut(s) 191, 289, 407, 434
CviQI GTAC 1 cut(s) 63
DdeI CTNAG 2 cut(s) 417, 552
DpnI GATC 1 cut(s) 218
DpnII GATC 1 cut(s) 216
Eam1104I CTCTTC 2 cut(s) 65, 360
EarI CTCTTC 2 cut(s) 65, 360
Eco147I AGGCCT 1 cut(s) 229
Eco47I GGWCC 2 cut(s) 133, 390
EcoRII CCWGG 2 cut(s) 224, 343
FaeI CATG 4 cut(s) 194, 292, 410, 437
FaqI GGGAC 1 cut(s) 376
FatI CATG 4 cut(s) 190, 288, 406, 433
FauI CCCGC 1 cut(s) 323
Fnu4HI GCNGC 4 cut(s) 93, 522, 525, 528
FokI GGATG 1 cut(s) 206
Fsp4HI GCNGC 4 cut(s) 93, 522, 525, 528
GluI GCNGC 4 cut(s) 93, 522, 525, 528
GsaI CCCAGC 1 cut(s) 397
HaeIII GGCC 3 cut(s) 108, 229, 314
Hin1II CATG 4 cut(s) 194, 292, 410, 437
HinfI GANTC 1 cut(s) 30
HphI GGTGA 1 cut(s) 266
Hpy188I TCNGA 1 cut(s) 325
Hpy188III TCNNGA 2 cut(s) 27, 34
HpyAV CCTTC 1 cut(s) 295
HpyCH4III ACNGT 1 cut(s) 262
HpyCH4V TGCA 7 cut(s) 190, 242, 292, 433, 521, 530, 547
HpyF10VI GCNNNNNNNGC 4 cut(s) 311, 521, 527, 533
HpyF3I CTNAG 2 cut(s) 417, 552
Hsp92II CATG 4 cut(s) 194, 292, 410, 437
Kzo9I GATC 1 cut(s) 216
LmnI GCTCC 1 cut(s) 440
Lsp1109I GCAGC 4 cut(s) 79, 511, 514, 533
LweI GCATC 2 cut(s) 79, 539
MabI ACCWGGT 1 cut(s) 343
MaeIII GTNAC 2 cut(s) 80, 280
MalI GATC 1 cut(s) 218
MboI GATC 1 cut(s) 216
MboII GAAGA 3 cut(s) 17, 82, 377
MslI CAYNNNNRTG 1 cut(s) 195
MspA1I CMGCKG 1 cut(s) 524
MspR9I CCNGG 2 cut(s) 226, 345
MvaI CCWGG 2 cut(s) 226, 345
MwoI GCNNNNNNNGC 4 cut(s) 311, 521, 527, 533
NdeII GATC 1 cut(s) 216
NlaIII CATG 4 cut(s) 194, 292, 410, 437
NlaIV GGNNCC 2 cut(s) 392, 442
NspI RCATGY 1 cut(s) 292
PceI AGGCCT 1 cut(s) 229
PfeI GAWTC 1 cut(s) 30
PflFI GACNNNGTC 1 cut(s) 137
PflMI CCANNNNNTGG 1 cut(s) 115
PkrI GCNGC 4 cut(s) 94, 523, 526, 529
Psp6I CCWGG 2 cut(s) 224, 343
PspFI CCCAGC 1 cut(s) 393
PspGI CCWGG 2 cut(s) 224, 343
PspN4I GGNNCC 2 cut(s) 392, 442
PspPI GGNCC 3 cut(s) 133, 313, 390
PstI CTGCAG 1 cut(s) 523
PstNI CAGNNNCTG 1 cut(s) 527
PsyI GACNNNGTC 1 cut(s) 137
PvuII CAGCTG 1 cut(s) 524
RsaI GTAC 1 cut(s) 64
RsaNI GTAC 1 cut(s) 63
RseI CAYNNNNRTG 1 cut(s) 195
SatI GCNGC 4 cut(s) 93, 522, 525, 528
Sau3AI GATC 1 cut(s) 216
Sau96I GGNCC 3 cut(s) 133, 313, 390
ScaI AGTACT 1 cut(s) 64
ScrFI CCNGG 2 cut(s) 226, 345
SexAI ACCWGGT 1 cut(s) 343
SfaNI GCATC 2 cut(s) 79, 539
SfcI CTRYAG 1 cut(s) 519
SinI GGWCC 2 cut(s) 133, 390
SmiMI CAYNNNNRTG 1 cut(s) 195
SseBI AGGCCT 1 cut(s) 229
SsiI CCGC 1 cut(s) 316
StuI AGGCCT 1 cut(s) 229
StyD4I CCNGG 2 cut(s) 224, 343
TaaI ACNGT 1 cut(s) 262
TatI WGTACW 1 cut(s) 62
TfiI GAWTC 1 cut(s) 30
TscAI CASTG 1 cut(s) 435
TseI GCWGC 4 cut(s) 92, 521, 524, 527
TspRI CASTG 1 cut(s) 435
Tth111I GACNNNGTC 1 cut(s) 137
Van91I CCANNNNNTGG 1 cut(s) 115
VpaK11BI GGWCC 2 cut(s) 133, 390
XceI RCATGY 1 cut(s) 292
XcmI CCANNNNNNNNNTGG 1 cut(s) 232
ZrmI AGTACT 1 cut(s) 64
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.