pycom05g12710

Cytokinin riboside 5'-monophosphate phosphoribohydrolase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
Physical Location & Seq
Forward (+)
16183078 .. 16184749
1672 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g12710.4

Sequence Viewer

Length: 753 bp
ATGACCTACCATTTTGGTGTTACTGCAAATCGAAAATCTCATCTATATATATTGGCTGTTTCCATCTTACTAGATGGAAGAGAAGGTTTTGAGATCGATTCAAGAGGGTTTGTGTGTTCTGTGGCAGCAGTACTGGGAAGAGGAACTGCTACAAAGATGCTGCCATTGAACTATTGGGTTTCAAGGAAGCTTGACCTTGTATATGGAGGAGGGAGCATTGGGCTGATGGGTCTGGTTTCCCAGGCTGTTTATCATGGTGGAGGGAATGTTCTTGGGATCATGCCAAGAACTCTAATATGTAAAGAGATTACAGGTGAAACAGTTGGAGAGTTAAGGCCAGTAGCCGACATGCACCAAAGGAAGGCAGAAATGGCCCGCCATTCTGATTGCTTCATTGCCCTACCAGGTGGCTATGGAACCTTGGAGGAGTTGCTAGAAGTGATCACTTGGGCACAGCTTGGAATCCATGACAAACCAGTTGGTTTGCTGAATGTTGATGGATACTACAACTACCTCCTCACTTTTATTGACAAAGCCGTGGATGACGGCTTTATCAAGCCTTCCCAGCGCCAAATCATAGTCTCTGCCCCCAGTGCCAAAGAACTTGTCCAAAAACTTGAGGAGTATGTGCCAGTGCATGATGGAGCCATAGCCCAAGCAAGGTGGGAGGTTGAGCAGCAGCAGCAGCAGGTGGTGGTGGGGTTCAATGCAGGTGCCGCAGCTGTTGCTTTGCAGGCAGAGATAGCTTTGTAA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

251

Amino Acids

27.18

Weight (kDa)

5.8

Isoelectric Point (pI)

33.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0013802)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 679, 701
Acc36I ACCTGC 2 cut(s) 679, 701
AccB1I GGYRCC 1 cut(s) 713
AciI CCGC 2 cut(s) 376, 717
AclWI GGATC 1 cut(s) 284
AfaI GTAC 1 cut(s) 132
AfiI CCNNNNNNNGG 2 cut(s) 361, 660
AgsI TTSAA 4 cut(s) 102, 169, 183, 706
AjnI CCWGG 2 cut(s) 240, 403
AloI GAACNNNNNNTCC 2 cut(s) 252, 284
AluBI AGCT 4 cut(s) 190, 457, 722, 746
AluI AGCT 4 cut(s) 190, 457, 722, 746
Alw26I GTCTC 1 cut(s) 586
AlwI GGATC 1 cut(s) 284
AoxI GGCC 2 cut(s) 335, 372
ApeKI GCWGC 7 cut(s) 125, 160, 676, 679, 682, 685, 719
ArsI GACNNNNNNTTYG 2 cut(s) 591, 623
AspLEI GCGC 1 cut(s) 570
AspS9I GGNCC 1 cut(s) 373
AsuHPI GGTGA 1 cut(s) 326
BaeGI GKGCMC 1 cut(s) 454
BanI GGYRCC 1 cut(s) 713
BbvI GCAGC 7 cut(s) 137, 147, 688, 691, 694, 697, 731
BccI CCATC 5 cut(s) 68, 71, 220, 491, 635
BceAI ACGGC 2 cut(s) 521, 562
BciT130I CCWGG 2 cut(s) 242, 405
BciVI GTATCC 1 cut(s) 494
BclI TGATCA 1 cut(s) 441
BcoDI GTCTC 1 cut(s) 586
BfaI CTAG 2 cut(s) 71, 434
BfoI RGCGCY 1 cut(s) 571
BfuAI ACCTGC 2 cut(s) 679, 701
BfuI GTATCC 1 cut(s) 494
BisI GCNGC 8 cut(s) 126, 161, 677, 680, 683, 686, 717, 720
BlsI GCNGC 8 cut(s) 127, 162, 678, 681, 684, 687, 718, 721
BmcAI AGTACT 1 cut(s) 132
Bme1390I CCNGG 2 cut(s) 242, 405
BmgT120I GGNCC 1 cut(s) 373
BmiI GGNNCC 3 cut(s) 418, 646, 715
BmrFI CCNGG 2 cut(s) 242, 405
BmrI ACTGGG 2 cut(s) 143, 585
BmsI GCATC 1 cut(s) 147
BmuI ACTGGG 2 cut(s) 143, 585
BpuEI CTTGAG 1 cut(s) 638
Bsa29I ATCGAT 1 cut(s) 96
BsaJI CCNNGG 3 cut(s) 240, 420, 537
BsaXI ACNNNNNCTCC 2 cut(s) 252, 282
Bsc4I CCNNNNNNNGG 2 cut(s) 361, 660
Bse1I ACTGG 5 cut(s) 138, 338, 476, 591, 632
Bse3DI GCAATG 1 cut(s) 393
BseBI CCWGG 2 cut(s) 242, 405
BseCI ATCGAT 1 cut(s) 96
BseDI CCNNGG 3 cut(s) 240, 420, 537
BseGI GGATG 1 cut(s) 547
BseLI CCNNNNNNNGG 2 cut(s) 361, 660
BseMI GCAATG 1 cut(s) 393
BseNI ACTGG 5 cut(s) 138, 338, 476, 591, 632
BseRI GAGGAG 4 cut(s) 222, 440, 506, 635
BseSI GKGCMC 1 cut(s) 454
BseXI GCAGC 7 cut(s) 137, 147, 688, 691, 694, 697, 731
BseYI CCCAGC 1 cut(s) 564
BshFI GGCC 2 cut(s) 337, 374
BshNI GGYRCC 1 cut(s) 713
BshVI ATCGAT 1 cut(s) 96
BslI CCNNNNNNNGG 2 cut(s) 361, 660
BsmAI GTCTC 1 cut(s) 586
BsnI GGCC 2 cut(s) 337, 374
Bsp1286I GDGCHC 1 cut(s) 454
Bsp143I GATC 3 cut(s) 93, 276, 441
BspACI CCGC 2 cut(s) 376, 717
BspANI GGCC 2 cut(s) 337, 374
BspDI ATCGAT 1 cut(s) 96
BspLI GGNNCC 3 cut(s) 418, 646, 715
BspMI ACCTGC 2 cut(s) 679, 701
BspPI GGATC 1 cut(s) 284
BspT107I GGYRCC 1 cut(s) 713
BsrDI GCAATG 1 cut(s) 393
BsrI ACTGG 5 cut(s) 138, 338, 476, 591, 632
BssECI CCNNGG 3 cut(s) 240, 420, 537
BssMI GATC 3 cut(s) 93, 276, 441
BssT1I CCWWGG 1 cut(s) 420
Bst2UI CCWGG 2 cut(s) 242, 405
Bst4CI ACNGT 1 cut(s) 322
Bst6I CTCTTC 2 cut(s) 73, 133
BstAPI GCANNNNNTGC 1 cut(s) 725
BstC8I GCNNGC 2 cut(s) 376, 735
BstDSI CCRYGG 1 cut(s) 537
BstF5I GGATG 1 cut(s) 547
BstH2I RGCGCY 1 cut(s) 571
BstHHI GCGC 1 cut(s) 570
BstKTI GATC 3 cut(s) 96, 279, 444
BstMAI GTCTC 1 cut(s) 586
BstMBI GATC 3 cut(s) 93, 276, 441
BstMWI GCNNNNNNNGC 9 cut(s) 371, 565, 593, 682, 685, 716, 725, 734, 743
BstNI CCWGG 2 cut(s) 242, 405
BstNSI RCATGY 1 cut(s) 352
BstSCI CCNGG 2 cut(s) 240, 403
BstSLI GKGCMC 1 cut(s) 454
BstV1I GCAGC 7 cut(s) 137, 147, 688, 691, 694, 697, 731
Bsu15I ATCGAT 1 cut(s) 96
BsuI GTATCC 1 cut(s) 494
BsuRI GGCC 2 cut(s) 337, 374
BsuTUI ATCGAT 1 cut(s) 96
BtgI CCRYGG 1 cut(s) 537
BtsCI GGATG 1 cut(s) 547
BtsIMutI CAGTG 2 cut(s) 598, 639
BveI ACCTGC 2 cut(s) 679, 701
Cac8I GCNNGC 2 cut(s) 376, 735
CfoI GCGC 1 cut(s) 570
Cfr13I GGNCC 1 cut(s) 373
ClaI ATCGAT 1 cut(s) 96
CsiI ACCWGGT 1 cut(s) 403
Csp6I GTAC 1 cut(s) 131
CspCI CAANNNNNGTGG 2 cut(s) 644, 679
CviAII CATG 5 cut(s) 254, 280, 349, 467, 638
CviQI GTAC 1 cut(s) 131
DpnI GATC 3 cut(s) 95, 278, 443
DpnII GATC 3 cut(s) 93, 276, 441
Eam1104I CTCTTC 2 cut(s) 73, 133
EarI CTCTTC 2 cut(s) 73, 133
Eco130I CCWWGG 1 cut(s) 420
EcoRII CCWGG 2 cut(s) 240, 403
EcoT14I CCWWGG 1 cut(s) 420
ErhI CCWWGG 1 cut(s) 420
FaeI CATG 5 cut(s) 257, 283, 352, 470, 641
FatI CATG 5 cut(s) 253, 279, 348, 466, 637
FauI CCCGC 1 cut(s) 383
FbaI TGATCA 1 cut(s) 441
Fnu4HI GCNGC 8 cut(s) 126, 161, 677, 680, 683, 686, 717, 720
FokI GGATG 1 cut(s) 554
Fsp4HI GCNGC 8 cut(s) 126, 161, 677, 680, 683, 686, 717, 720
FspBI CTAG 2 cut(s) 71, 434
GlaI GCGC 1 cut(s) 569
GluI GCNGC 8 cut(s) 126, 161, 677, 680, 683, 686, 717, 720
GsaI CCCAGC 1 cut(s) 568
HaeII RGCGCY 1 cut(s) 571
HaeIII GGCC 2 cut(s) 337, 374
HhaI GCGC 1 cut(s) 570
Hin1II CATG 5 cut(s) 257, 283, 352, 470, 641
Hin6I GCGC 1 cut(s) 568
HinP1I GCGC 1 cut(s) 568
HindIII AAGCTT 1 cut(s) 188
HinfI GANTC 2 cut(s) 98, 462
HphI GGTGA 1 cut(s) 326
Hpy188I TCNGA 1 cut(s) 385
Hpy188III TCNNGA 1 cut(s) 102
HpyAV CCTTC 3 cut(s) 77, 355, 570
HpyCH4III ACNGT 1 cut(s) 322
HpyCH4V TGCA 5 cut(s) 26, 352, 637, 710, 733
HpyF10VI GCNNNNNNNGC 9 cut(s) 371, 565, 593, 682, 685, 716, 725, 734, 743
Hsp92II CATG 5 cut(s) 257, 283, 352, 470, 641
HspAI GCGC 1 cut(s) 568
Ksp22I TGATCA 1 cut(s) 441
Kzo9I GATC 3 cut(s) 93, 276, 441
LmnI GCTCC 2 cut(s) 213, 644
Lsp1109I GCAGC 7 cut(s) 137, 147, 688, 691, 694, 697, 731
LweI GCATC 1 cut(s) 147
MabI ACCWGGT 1 cut(s) 403
MaeI CTAG 2 cut(s) 71, 434
MaeIII GTNAC 1 cut(s) 19
MalI GATC 3 cut(s) 95, 278, 443
MboI GATC 3 cut(s) 93, 276, 441
MboII GAAGA 2 cut(s) 90, 150
MhlI GDGCHC 1 cut(s) 454
MmeI TCCRAC 1 cut(s) 304
MseI TTAA 1 cut(s) 332
MslI CAYNNNNRTG 1 cut(s) 15
MspA1I CMGCKG 1 cut(s) 722
MspR9I CCNGG 2 cut(s) 242, 405
MvaI CCWGG 2 cut(s) 242, 405
MwoI GCNNNNNNNGC 9 cut(s) 371, 565, 593, 682, 685, 716, 725, 734, 743
NdeII GATC 3 cut(s) 93, 276, 441
NlaIII CATG 5 cut(s) 257, 283, 352, 470, 641
NlaIV GGNNCC 3 cut(s) 418, 646, 715
NspI RCATGY 1 cut(s) 352
PaqCI CACCTGC 2 cut(s) 679, 701
PfeI GAWTC 2 cut(s) 98, 462
PkrI GCNGC 8 cut(s) 127, 162, 678, 681, 684, 687, 718, 721
Psp6I CCWGG 2 cut(s) 240, 403
PspFI CCCAGC 1 cut(s) 564
PspGI CCWGG 2 cut(s) 240, 403
PspN4I GGNNCC 3 cut(s) 418, 646, 715
PspPI GGNCC 1 cut(s) 373
PvuII CAGCTG 1 cut(s) 722
RsaI GTAC 1 cut(s) 132
RsaNI GTAC 1 cut(s) 131
RseI CAYNNNNRTG 1 cut(s) 15
SaqAI TTAA 1 cut(s) 332
SatI GCNGC 8 cut(s) 126, 161, 677, 680, 683, 686, 717, 720
Sau3AI GATC 3 cut(s) 93, 276, 441
Sau96I GGNCC 1 cut(s) 373
ScaI AGTACT 1 cut(s) 132
ScrFI CCNGG 2 cut(s) 242, 405
SduI GDGCHC 1 cut(s) 454
SexAI ACCWGGT 1 cut(s) 403
SfaNI GCATC 1 cut(s) 147
SmiMI CAYNNNNRTG 1 cut(s) 15
SmlI CTYRAG 1 cut(s) 617
SmoI CTYRAG 1 cut(s) 617
SsiI CCGC 2 cut(s) 376, 717
SspMI CTAG 2 cut(s) 71, 434
StyD4I CCNGG 2 cut(s) 240, 403
StyI CCWWGG 1 cut(s) 420
TaaI ACNGT 1 cut(s) 322
TaqI TCGA 2 cut(s) 31, 96
TatI WGTACW 1 cut(s) 130
TauI GCSGC 1 cut(s) 719
TfiI GAWTC 2 cut(s) 98, 462
Tru1I TTAA 1 cut(s) 332
Tru9I TTAA 1 cut(s) 332
TscAI CASTG 2 cut(s) 598, 639
TseI GCWGC 7 cut(s) 125, 160, 676, 679, 682, 685, 719
TspDTI ATGAA 1 cut(s) 382
TspRI CASTG 2 cut(s) 598, 639
XceI RCATGY 1 cut(s) 352
XcmI CCANNNNNNNNNTGG 1 cut(s) 171
XspI CTAG 2 cut(s) 71, 434
ZrmI AGTACT 1 cut(s) 132
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.