RLG00000013119
NAC Family

Cytokinin-activating enzyme working in the direct activation pathway. Phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
Physical Location & Seq
Reverse (-)
26409041 .. 26410494
1454 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000013119

Sequence Viewer

Length: 711 bp
ATGGAAGAGGAGGAGGCTGTAAGGTCAAGATTCAAGAGGGTTTGTGTGTTTTGTGGAAGCAGTACTGGGAAGAGGGAATGTTACAAAGATGCTGCCATAGAATTAGGCCAAGAGCTGGTGTCAAGGAGGCTGGACCTTGTTTATGGAGGTGGAAGCATTGGACTGATGGGTTTGGTATCGCAGGCTGTGCATGATGGTGGAGGCAAAGTTCTTGGGATCATCCCCAGGCCGCTAATGGGTGCAGAGATAACAGGTGAAACAGTTGGGGAGGAAAGGTCTGTAACCGACATGCACCAAAGGAAGGCTGAAATGGCCCGCCATTCTGATTGTTTTATAGCATTACCAGGTGGGTATGGAACTTTGGAAGAGTTGCTGGAAGTGATAGCTTGGTCCCAGCTTGGTATCCATGACAAACCTGTGGGTTTGCTCAATGTTGATGGCTACTACAACTACCTCCTCACTTTTATTGACAAAGCCGTGGATGATGGCTTTATTGAGCCTTCCCAGCGCCACATCATAGTCTCTGCCACCAATGCCAAGGAGCTTGTTGAAAAACTTGAGGAGTATGTGCCAGTGCATGATGGAGCCATAGCCAAAGCAAGTTGGGAGGTTCAGCAACAAGAACAGCAGGAGAAACAACAGGTGGGGTTCAATGTTGCTTCTGCAGCTGCTGCATCTGCTACTACTTTGCAGACTGAGATAGCTTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

237

Amino Acids

25.71

Weight (kDa)

4.92

Isoelectric Point (pI)

52.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LDcluster4 PF18306 19 - 144 5.6e-14 SLOG cluster4 family
Lysine_decarbox PF03641 56 - 186 3.5e-47 Possible lysine decarboxylase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0013802)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 115
AciI CCGC 2 cut(s) 230, 316
AclWI GGATC 1 cut(s) 224
AfaI GTAC 1 cut(s) 64
AfiI CCNNNNNNNGG 3 cut(s) 115, 236, 301
AgsI TTSAA 3 cut(s) 34, 551, 652
AjnI CCWGG 2 cut(s) 224, 343
AloI GAACNNNNNNTCC 2 cut(s) 192, 224
AluBI AGCT 6 cut(s) 115, 386, 397, 544, 668, 704
AluI AGCT 6 cut(s) 115, 386, 397, 544, 668, 704
Alw26I GTCTC 1 cut(s) 526
AlwI GGATC 1 cut(s) 224
AlwNI CAGNNNCTG 1 cut(s) 671
AoxI GGCC 3 cut(s) 106, 227, 312
ApeKI GCWGC 4 cut(s) 92, 665, 668, 671
AspLEI GCGC 1 cut(s) 510
AspS9I GGNCC 3 cut(s) 133, 313, 390
AsuHPI GGTGA 1 cut(s) 266
AvaII GGWCC 2 cut(s) 133, 390
BbvI GCAGC 4 cut(s) 79, 655, 658, 677
BccI CCATC 5 cut(s) 160, 188, 431, 479, 575
BceAI ACGGC 1 cut(s) 461
BciT130I CCWGG 2 cut(s) 226, 345
BciVI GTATCC 1 cut(s) 413
BcoDI GTCTC 1 cut(s) 526
BfmI CTRYAG 1 cut(s) 663
BfoI RGCGCY 1 cut(s) 511
BfuI GTATCC 1 cut(s) 413
BisI GCNGC 5 cut(s) 93, 230, 666, 669, 672
BlsI GCNGC 5 cut(s) 94, 231, 667, 670, 673
BmcAI AGTACT 1 cut(s) 64
Bme1390I CCNGG 2 cut(s) 226, 345
Bme18I GGWCC 2 cut(s) 133, 390
BmgT120I GGNCC 3 cut(s) 133, 313, 390
BmiI GGNNCC 2 cut(s) 392, 586
BmrFI CCNGG 2 cut(s) 226, 345
BmrI ACTGGG 1 cut(s) 75
BmsI GCATC 2 cut(s) 79, 683
BmuI ACTGGG 1 cut(s) 75
BpuEI CTTGAG 1 cut(s) 578
BsaJI CCNNGG 3 cut(s) 224, 477, 537
BsaXI ACNNNNNCTCC 4 cut(s) 192, 222, 260, 290
Bsc4I CCNNNNNNNGG 3 cut(s) 115, 236, 301
Bse1I ACTGG 2 cut(s) 70, 572
BseBI CCWGG 2 cut(s) 226, 345
BseDI CCNNGG 3 cut(s) 224, 477, 537
BseGI GGATG 2 cut(s) 219, 487
BseLI CCNNNNNNNGG 3 cut(s) 115, 236, 301
BseMII CTCAG 1 cut(s) 687
BseNI ACTGG 2 cut(s) 70, 572
BseRI GAGGAG 4 cut(s) 23, 26, 446, 575
BseXI GCAGC 4 cut(s) 79, 655, 658, 677
BseYI CCCAGC 2 cut(s) 393, 504
BsgI GTGCAG 1 cut(s) 261
BshFI GGCC 3 cut(s) 108, 229, 314
BslFI GGGAC 1 cut(s) 376
BslI CCNNNNNNNGG 3 cut(s) 115, 236, 301
BsmAI GTCTC 1 cut(s) 526
BsmFI GGGAC 1 cut(s) 376
BsnI GGCC 3 cut(s) 108, 229, 314
Bsp143I GATC 1 cut(s) 216
BspACI CCGC 2 cut(s) 230, 316
BspANI GGCC 3 cut(s) 108, 229, 314
BspCNI CTCAG 1 cut(s) 688
BspLI GGNNCC 2 cut(s) 392, 586
BspMAI CTGCAG 1 cut(s) 667
BspPI GGATC 1 cut(s) 224
BsrI ACTGG 2 cut(s) 70, 572
BssECI CCNNGG 3 cut(s) 224, 477, 537
BssMI GATC 1 cut(s) 216
BssT1I CCWWGG 1 cut(s) 537
Bst2UI CCWGG 2 cut(s) 226, 345
Bst4CI ACNGT 1 cut(s) 262
Bst6I CTCTTC 2 cut(s) 65, 360
BstAPI GCANNNNNTGC 2 cut(s) 187, 671
BstC8I GCNNGC 2 cut(s) 183, 316
BstDEI CTNAG 1 cut(s) 696
BstDSI CCRYGG 1 cut(s) 477
BstF5I GGATG 2 cut(s) 219, 487
BstH2I RGCGCY 1 cut(s) 511
BstHHI GCGC 1 cut(s) 510
BstKTI GATC 1 cut(s) 219
BstMAI GTCTC 1 cut(s) 526
BstMBI GATC 1 cut(s) 216
BstMWI GCNNNNNNNGC 7 cut(s) 187, 311, 505, 533, 665, 671, 677
BstNI CCWGG 2 cut(s) 226, 345
BstNSI RCATGY 1 cut(s) 292
BstSCI CCNGG 2 cut(s) 224, 343
BstSFI CTRYAG 1 cut(s) 663
BstV1I GCAGC 4 cut(s) 79, 655, 658, 677
BsuI GTATCC 1 cut(s) 413
BsuRI GGCC 3 cut(s) 108, 229, 314
BtgI CCRYGG 1 cut(s) 477
BtsCI GGATG 2 cut(s) 219, 487
BtsIMutI CAGTG 1 cut(s) 579
Cac8I GCNNGC 2 cut(s) 183, 316
CaiI CAGNNNCTG 1 cut(s) 671
CfoI GCGC 1 cut(s) 510
Cfr13I GGNCC 3 cut(s) 133, 313, 390
CsiI ACCWGGT 1 cut(s) 343
Csp6I GTAC 1 cut(s) 63
CviAII CATG 4 cut(s) 191, 289, 407, 578
CviQI GTAC 1 cut(s) 63
DdeI CTNAG 1 cut(s) 696
DpnI GATC 1 cut(s) 218
DpnII GATC 1 cut(s) 216
Eam1104I CTCTTC 2 cut(s) 65, 360
EarI CTCTTC 2 cut(s) 65, 360
Eco130I CCWWGG 1 cut(s) 537
Eco47I GGWCC 2 cut(s) 133, 390
EcoRII CCWGG 2 cut(s) 224, 343
EcoT14I CCWWGG 1 cut(s) 537
ErhI CCWWGG 1 cut(s) 537
FaeI CATG 4 cut(s) 194, 292, 410, 581
FaqI GGGAC 1 cut(s) 376
FatI CATG 4 cut(s) 190, 288, 406, 577
FauI CCCGC 1 cut(s) 323
Fnu4HI GCNGC 5 cut(s) 93, 230, 666, 669, 672
FokI GGATG 2 cut(s) 206, 494
Fsp4HI GCNGC 5 cut(s) 93, 230, 666, 669, 672
GlaI GCGC 1 cut(s) 509
GluI GCNGC 5 cut(s) 93, 230, 666, 669, 672
GsaI CCCAGC 2 cut(s) 397, 508
HaeII RGCGCY 1 cut(s) 511
HaeIII GGCC 3 cut(s) 108, 229, 314
HhaI GCGC 1 cut(s) 510
Hin1II CATG 4 cut(s) 194, 292, 410, 581
Hin6I GCGC 1 cut(s) 508
HinP1I GCGC 1 cut(s) 508
HinfI GANTC 1 cut(s) 30
HphI GGTGA 1 cut(s) 266
Hpy188I TCNGA 1 cut(s) 325
Hpy188III TCNNGA 2 cut(s) 27, 34
HpyAV CCTTC 2 cut(s) 295, 510
HpyCH4III ACNGT 1 cut(s) 262
HpyCH4V TGCA 7 cut(s) 190, 242, 292, 577, 665, 674, 691
HpyF10VI GCNNNNNNNGC 7 cut(s) 187, 311, 505, 533, 665, 671, 677
HpyF3I CTNAG 1 cut(s) 696
Hsp92II CATG 4 cut(s) 194, 292, 410, 581
HspAI GCGC 1 cut(s) 508
Kzo9I GATC 1 cut(s) 216
LmnI GCTCC 2 cut(s) 541, 584
Lsp1109I GCAGC 4 cut(s) 79, 655, 658, 677
LweI GCATC 2 cut(s) 79, 683
MabI ACCWGGT 1 cut(s) 343
MaeIII GTNAC 2 cut(s) 80, 280
MalI GATC 1 cut(s) 218
MboI GATC 1 cut(s) 216
MboII GAAGA 3 cut(s) 17, 82, 377
MluCI AATT 1 cut(s) 101
MslI CAYNNNNRTG 1 cut(s) 195
MspA1I CMGCKG 1 cut(s) 668
MspR9I CCNGG 2 cut(s) 226, 345
MvaI CCWGG 2 cut(s) 226, 345
MwoI GCNNNNNNNGC 7 cut(s) 187, 311, 505, 533, 665, 671, 677
NdeII GATC 1 cut(s) 216
NlaIII CATG 4 cut(s) 194, 292, 410, 581
NlaIV GGNNCC 2 cut(s) 392, 586
NspI RCATGY 1 cut(s) 292
PfeI GAWTC 1 cut(s) 30
PflMI CCANNNNNTGG 1 cut(s) 115
PkrI GCNGC 5 cut(s) 94, 231, 667, 670, 673
Psp6I CCWGG 2 cut(s) 224, 343
PspFI CCCAGC 2 cut(s) 393, 504
PspGI CCWGG 2 cut(s) 224, 343
PspN4I GGNNCC 2 cut(s) 392, 586
PspPI GGNCC 3 cut(s) 133, 313, 390
PstI CTGCAG 1 cut(s) 667
PstNI CAGNNNCTG 1 cut(s) 671
PvuII CAGCTG 1 cut(s) 668
RsaI GTAC 1 cut(s) 64
RsaNI GTAC 1 cut(s) 63
RseI CAYNNNNRTG 1 cut(s) 195
SatI GCNGC 5 cut(s) 93, 230, 666, 669, 672
Sau3AI GATC 1 cut(s) 216
Sau96I GGNCC 3 cut(s) 133, 313, 390
ScaI AGTACT 1 cut(s) 64
ScrFI CCNGG 2 cut(s) 226, 345
SexAI ACCWGGT 1 cut(s) 343
SfaNI GCATC 2 cut(s) 79, 683
SfcI CTRYAG 1 cut(s) 663
SinI GGWCC 2 cut(s) 133, 390
SmiMI CAYNNNNRTG 1 cut(s) 195
SmlI CTYRAG 1 cut(s) 557
SmoI CTYRAG 1 cut(s) 557
Sse9I AATT 1 cut(s) 101
SsiI CCGC 2 cut(s) 230, 316
StyD4I CCNGG 2 cut(s) 224, 343
StyI CCWWGG 1 cut(s) 537
TaaI ACNGT 1 cut(s) 262
TasI AATT 1 cut(s) 101
TatI WGTACW 1 cut(s) 62
TauI GCSGC 1 cut(s) 232
TfiI GAWTC 1 cut(s) 30
TscAI CASTG 1 cut(s) 579
TseI GCWGC 4 cut(s) 92, 665, 668, 671
TspRI CASTG 1 cut(s) 579
Van91I CCANNNNNTGG 1 cut(s) 115
VpaK11BI GGWCC 2 cut(s) 133, 390
XceI RCATGY 1 cut(s) 292
XcmI CCANNNNNNNNNTGG 1 cut(s) 232
ZrmI AGTACT 1 cut(s) 64
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.