MD10G1226700.v1.1

cationic amino acid transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0019265
Physical Location & Seq
Reverse (-)
32370099 .. 32370544
446 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1226700.v1.1.491

Sequence Viewer

Length: 354 bp
ATGGGTTCCATGGAAGCAGTGGGTGAAGATGTCCAGCCGAGAAGTTACTGGAGATGCAGCAAACAAGATTTCCTGCCCGAAGAATCCTTTCAGAATTGGAGCACATACGGAGCGGCCCTGTCACAAACAGGCCACAGGTTCAAGAACCGTCTCCTCAGCAGATCGAATGACAACGATGAGATTCGGGAGCTTCGGAAGCAAAGCGAGAACGACATGAAGCGCTGCCTCACGTGGTGGGATCTCATCTGGTTCGGGTTTGGTTCGGTCATTGGTGCAGGCATCTTTGTGCTTACTGGCCAAGAAACTCATAAGCATGCTGGACCGGCTATTGTCTTGTCCTACAGTTTTCGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AA_permease_2 AA_permease_C

Protein Analysis

118

Amino Acids

13.51

Weight (kDa)

6.82

Isoelectric Point (pI)

43.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019265)

Species Orthologous Gene IDs
malus_domestica MD10G1226700.v1.1
pyrus_communis pycom16g10380
rosa_multiflora Rmu_co7960940.1_g000001 Rmu_sc0030939.1_g000001
rosa_roxburghii Rroxscaffold_1G00060850
rosa_samantha Rh5BG121300 Rh5CG131500 Rh5DG120100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 113
AciI CCGC 1 cut(s) 113
AclWI GGATC 1 cut(s) 246
AcoI YGGCCR 1 cut(s) 295
AcvI CACGTG 1 cut(s) 231
AdeI CACNNNGTG 1 cut(s) 234
AfeI AGCGCT 1 cut(s) 221
AgsI TTSAA 1 cut(s) 142
AluBI AGCT 1 cut(s) 190
AluI AGCT 1 cut(s) 190
Alw21I GWGCWC 1 cut(s) 104
Alw26I GTCTC 1 cut(s) 155
AlwI GGATC 1 cut(s) 246
Aor51HI AGCGCT 1 cut(s) 221
AoxI GGCC 3 cut(s) 114, 130, 295
ApeKI GCWGC 2 cut(s) 57, 222
Asp700I GAANNNNTTC 1 cut(s) 87
AspLEI GCGC 1 cut(s) 222
AspS9I GGNCC 2 cut(s) 115, 320
AsuHPI GGTGA 1 cut(s) 35
AvaII GGWCC 1 cut(s) 320
BalI TGGCCA 1 cut(s) 297
BbrPI CACGTG 1 cut(s) 231
Bbv12I GWGCWC 1 cut(s) 104
BbvCI CCTCAGC 1 cut(s) 155
BbvI GCAGC 2 cut(s) 69, 209
BcoDI GTCTC 1 cut(s) 155
BfmI CTRYAG 1 cut(s) 340
BfoI RGCGCY 1 cut(s) 223
BisI GCNGC 3 cut(s) 58, 114, 223
BlsI GCNGC 3 cut(s) 59, 115, 224
Bme18I GGWCC 1 cut(s) 320
BmgT120I GGNCC 2 cut(s) 115, 320
BmiI GGNNCC 1 cut(s) 7
BmsI GCATC 2 cut(s) 44, 288
BpmI CTGGAG 1 cut(s) 70
Bpu10I CCTNAGC 1 cut(s) 155
BsaAI YACGTR 1 cut(s) 231
BsaJI CCNNGG 1 cut(s) 9
Bse118I RCCGGY 1 cut(s) 322
Bse1I ACTGG 2 cut(s) 53, 298
BseDI CCNNGG 1 cut(s) 9
BseMII CTCAG 1 cut(s) 169
BseNI ACTGG 2 cut(s) 53, 298
BseRI GAGGAG 1 cut(s) 143
BseXI GCAGC 2 cut(s) 69, 209
BsgI GTGCAG 1 cut(s) 294
BshFI GGCC 3 cut(s) 116, 132, 297
BsiHKAI GWGCWC 1 cut(s) 104
BsiSI CCGG 1 cut(s) 323
BsmAI GTCTC 1 cut(s) 155
BsmBI CGTCTC 1 cut(s) 155
BsnI GGCC 3 cut(s) 116, 132, 297
Bsp1286I GDGCHC 1 cut(s) 104
Bsp143I GATC 2 cut(s) 161, 238
Bsp19I CCATGG 1 cut(s) 9
BspACI CCGC 1 cut(s) 113
BspANI GGCC 3 cut(s) 116, 132, 297
BspCNI CTCAG 1 cut(s) 168
BspLI GGNNCC 1 cut(s) 7
BspPI GGATC 1 cut(s) 246
BsrBI CCGCTC 1 cut(s) 113
BsrFI RCCGGY 1 cut(s) 322
BsrI ACTGG 2 cut(s) 53, 298
BssAI RCCGGY 1 cut(s) 322
BssECI CCNNGG 1 cut(s) 9
BssMI GATC 2 cut(s) 161, 238
BssT1I CCWWGG 1 cut(s) 9
Bst4CI ACNGT 2 cut(s) 149, 344
BstBAI YACGTR 1 cut(s) 231
BstC8I GCNNGC 2 cut(s) 277, 315
BstDEI CTNAG 1 cut(s) 155
BstDSI CCRYGG 1 cut(s) 9
BstH2I RGCGCY 1 cut(s) 223
BstHHI GCGC 1 cut(s) 222
BstKTI GATC 2 cut(s) 164, 241
BstMAI GTCTC 1 cut(s) 155
BstMBI GATC 2 cut(s) 161, 238
BstMWI GCNNNNNNNGC 2 cut(s) 196, 323
BstNSI RCATGY 1 cut(s) 317
BstSFI CTRYAG 1 cut(s) 340
BstV1I GCAGC 2 cut(s) 69, 209
BstX2I RGATCY 1 cut(s) 238
BstYI RGATCY 1 cut(s) 238
BsuRI GGCC 3 cut(s) 116, 132, 297
BtgI CCRYGG 1 cut(s) 9
BtsI GCAGTG 1 cut(s) 24
BtsIMutI CAGTG 1 cut(s) 24
Cac8I GCNNGC 2 cut(s) 277, 315
CfoI GCGC 1 cut(s) 222
Cfr10I RCCGGY 1 cut(s) 322
Cfr13I GGNCC 2 cut(s) 115, 320
CviAII CATG 3 cut(s) 10, 214, 314
CviJI RGCY 6 cut(s) 37, 116, 132, 190, 297, 326
CviKI_1 RGCY 6 cut(s) 37, 116, 132, 190, 297, 326
DdeI CTNAG 1 cut(s) 155
DpnI GATC 2 cut(s) 163, 240
DpnII GATC 2 cut(s) 161, 238
DraIII CACNNNGTG 1 cut(s) 234
EaeI YGGCCR 1 cut(s) 295
Eco130I CCWWGG 1 cut(s) 9
Eco47I GGWCC 1 cut(s) 320
Eco47III AGCGCT 1 cut(s) 221
Eco72I CACGTG 1 cut(s) 231
EcoT14I CCWWGG 1 cut(s) 9
ErhI CCWWGG 1 cut(s) 9
Esp3I CGTCTC 1 cut(s) 155
FaeI CATG 3 cut(s) 13, 217, 317
FaiI YATR 5 cut(s) 11, 106, 215, 309, 315
FatI CATG 3 cut(s) 9, 213, 313
Fnu4HI GCNGC 3 cut(s) 58, 114, 223
Fsp4HI GCNGC 3 cut(s) 58, 114, 223
GlaI GCGC 1 cut(s) 221
GluI GCNGC 3 cut(s) 58, 114, 223
GsuI CTGGAG 1 cut(s) 70
HaeII RGCGCY 1 cut(s) 223
HaeIII GGCC 3 cut(s) 116, 132, 297
HapII CCGG 1 cut(s) 323
HhaI GCGC 1 cut(s) 222
Hin1II CATG 3 cut(s) 13, 217, 317
Hin6I GCGC 1 cut(s) 220
HinP1I GCGC 1 cut(s) 220
HinfI GANTC 2 cut(s) 83, 181
HpaII CCGG 1 cut(s) 323
HphI GGTGA 1 cut(s) 35
Hpy188I TCNGA 2 cut(s) 93, 195
Hpy188III TCNNGA 2 cut(s) 142, 185
HpyCH4III ACNGT 2 cut(s) 149, 344
HpyCH4IV ACGT 1 cut(s) 230
HpyCH4V TGCA 2 cut(s) 57, 275
HpyF10VI GCNNNNNNNGC 2 cut(s) 196, 323
HpyF3I CTNAG 1 cut(s) 155
HpySE526I ACGT 1 cut(s) 230
Hsp92II CATG 3 cut(s) 13, 217, 317
HspAI GCGC 1 cut(s) 220
Kzo9I GATC 2 cut(s) 161, 238
LmnI GCTCC 3 cut(s) 99, 110, 187
Lsp1109I GCAGC 2 cut(s) 69, 209
LweI GCATC 2 cut(s) 44, 288
MaeII ACGT 1 cut(s) 230
MaeIII GTNAC 2 cut(s) 44, 120
MalI GATC 2 cut(s) 163, 240
MbiI CCGCTC 1 cut(s) 113
MboI GATC 2 cut(s) 161, 238
MboII GAAGA 2 cut(s) 38, 92
MflI RGATCY 1 cut(s) 238
MhlI GDGCHC 1 cut(s) 104
MlsI TGGCCA 1 cut(s) 297
MluCI AATT 1 cut(s) 94
MluNI TGGCCA 1 cut(s) 297
MnlI CCTC 2 cut(s) 164, 236
Mox20I TGGCCA 1 cut(s) 297
MroXI GAANNNNTTC 1 cut(s) 87
MscI TGGCCA 1 cut(s) 297
MslI CAYNNNNRTG 2 cut(s) 284, 312
Msp20I TGGCCA 1 cut(s) 297
MspI CCGG 1 cut(s) 323
MwoI GCNNNNNNNGC 2 cut(s) 196, 323
NcoI CCATGG 1 cut(s) 9
NdeII GATC 2 cut(s) 161, 238
NlaIII CATG 3 cut(s) 13, 217, 317
NlaIV GGNNCC 1 cut(s) 7
NmeAIII GCCGAG 1 cut(s) 63
NmuCI GTSAC 1 cut(s) 120
NspI RCATGY 1 cut(s) 317
PaeI GCATGC 1 cut(s) 317
PdmI GAANNNNTTC 1 cut(s) 87
PfeI GAWTC 2 cut(s) 83, 181
PkrI GCNGC 3 cut(s) 59, 115, 224
PmaCI CACGTG 1 cut(s) 231
PmlI CACGTG 1 cut(s) 231
Ppu21I YACGTR 1 cut(s) 231
PspCI CACGTG 1 cut(s) 231
PspN4I GGNNCC 1 cut(s) 7
PspPI GGNCC 2 cut(s) 115, 320
PsuI RGATCY 1 cut(s) 238
RseI CAYNNNNRTG 2 cut(s) 284, 312
SatI GCNGC 3 cut(s) 58, 114, 223
Sau3AI GATC 2 cut(s) 161, 238
Sau96I GGNCC 2 cut(s) 115, 320
SduI GDGCHC 1 cut(s) 104
SetI ASST 3 cut(s) 140, 192, 233
SfaNI GCATC 2 cut(s) 44, 288
SfcI CTRYAG 1 cut(s) 340
SinI GGWCC 1 cut(s) 320
SmiMI CAYNNNNRTG 2 cut(s) 284, 312
SphI GCATGC 1 cut(s) 317
Sse9I AATT 1 cut(s) 94
SsiI CCGC 1 cut(s) 113
StyI CCWWGG 1 cut(s) 9
TaaI ACNGT 2 cut(s) 149, 344
TaiI ACGT 1 cut(s) 233
TaqI TCGA 1 cut(s) 164
TaqII GACCGA 1 cut(s) 253
TasI AATT 1 cut(s) 94
TauI GCSGC 1 cut(s) 116
TfiI GAWTC 2 cut(s) 83, 181
TscAI CASTG 1 cut(s) 24
TseFI GTSAC 1 cut(s) 120
TseI GCWGC 2 cut(s) 57, 222
Tsp45I GTSAC 1 cut(s) 120
TspDTI ATGAA 1 cut(s) 230
TspGWI ACGGA 1 cut(s) 123
TspRI CASTG 1 cut(s) 24
VpaK11BI GGWCC 1 cut(s) 320
XceI RCATGY 1 cut(s) 317
XcmI CCANNNNNNNNNTGG 1 cut(s) 16
XmnI GAANNNNTTC 1 cut(s) 87
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.