Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co7960940.1

Orthogroup ID

OG0019265

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 452

Gene Structure 452 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co7960940.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 424 bp

atggagatgagcggaacggaaccgagcggcggaggcgagggactgaagaggcggtggtgttcgtgcggaaagaacgattttctcccggaggagtcgttcgagagctggggcaattacgccaatgcgctccggtcgactccggcgaggttcaaggacaggttcttcacgcggtccgcctacagcaccgagctggtggaggtgaaggcgcggagccagcacgagatgaagaagacgcttgactggtgggacctcatctggttcgggctcggagctgtcatcggcgctggaatcttcgtcctcactggattcgaggccaagagacacgccggacccgccgtcgtcatgtcctacgtcgtctccggcgtctccgccttgctctctgttttctgttacacagagttcgccgtcgagattcctgttgcag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AA_permease_2 AA_permease_C

Protein Analysis

141

Amino Acids

15.63

Weight (kDa)

6.12

Isoelectric Point (pI)

58.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019265)

Species	Orthologous Gene IDs
malus_domestica	MD10G1226700.v1.1
pyrus_communis	pycom16g10380
rosa_multiflora	Rmu_co7960940.1_g000001 Rmu_sc0030939.1_g000001
rosa_roxburghii	Rroxscaffold_1G00060850
rosa_samantha	Rh5BG121300 Rh5CG131500 Rh5DG120100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	12, 27
AccI	GTMKAC	1 cut(s)	134
AccII	CGCG	2 cut(s)	169, 208
AcuI	CTGAAG	1 cut(s)	65
AcyI	GRCGYC	1 cut(s)	363
AfiI	CCNNNNNNNGG	1 cut(s)	29
AgsI	TTSAA	1 cut(s)	151
AhdI	GACNNNNNGTC	1 cut(s)	335
AloI	GAACNNNNNNTCC	2 cut(s)	80, 112
AluBI	AGCT	3 cut(s)	105, 190, 272
AluI	AGCT	3 cut(s)	105, 190, 272
Alw26I	GTCTC	3 cut(s)	313, 361, 370
AoxI	GGCC	1 cut(s)	312
AspLEI	GCGC	3 cut(s)	127, 208, 284
AspS9I	GGNCC	3 cut(s)	171, 247, 329
AsuC2I	CCSGG	1 cut(s)	86
AsuHPI	GGTGA	1 cut(s)	211
AvaII	GGWCC	3 cut(s)	171, 247, 329
BanII	GRGCYC	1 cut(s)	267
BauI	CACGAG	1 cut(s)	218
BbsI	GAAGAC	1 cut(s)	236
BceAI	ACGGC	2 cut(s)	320, 389
BcnI	CCSGG	1 cut(s)	86
BcoDI	GTCTC	3 cut(s)	313, 361, 370
BfmI	CTRYAG	1 cut(s)	178
BfoI	RGCGCY	1 cut(s)	285
BisI	GCNGC	1 cut(s)	28
BlsI	GCNGC	1 cut(s)	29
Bme1390I	CCNGG	1 cut(s)	86
Bme18I	GGWCC	3 cut(s)	171, 247, 329
BmeRI	GACNNNNNGTC	1 cut(s)	335
BmgT120I	GGNCC	3 cut(s)	171, 247, 329
BmiI	GGNNCC	4 cut(s)	21, 212, 248, 331
BmrFI	CCNGG	1 cut(s)	86
BpiI	GAAGAC	1 cut(s)	236
BpuMI	CCSGG	1 cut(s)	86
BsaHI	GRCGYC	1 cut(s)	363
BsaWI	WCCGGW	1 cut(s)	129
BsaXI	ACNNNNNCTCC	4 cut(s)	80, 110, 341, 371
Bsc4I	CCNNNNNNNGG	1 cut(s)	29
Bse1I	ACTGG	2 cut(s)	245, 307
BseLI	CCNNNNNNNGG	1 cut(s)	29
BseNI	ACTGG	2 cut(s)	245, 307
BseRI	GAGGAG	1 cut(s)	104
BseYI	CCCAGC	1 cut(s)	105
Bsh1236I	CGCG	2 cut(s)	169, 208
Bsh1285I	CGRYCG	1 cut(s)	134
BshFI	GGCC	1 cut(s)	314
BsiEI	CGRYCG	1 cut(s)	134
BsiSI	CCGG	5 cut(s)	86, 130, 140, 327, 360
BslFI	GGGAC	2 cut(s)	54, 260
BslI	CCNNNNNNNGG	1 cut(s)	29
BsmAI	GTCTC	3 cut(s)	313, 361, 370
BsmBI	CGTCTC	2 cut(s)	361, 370
BsmFI	GGGAC	2 cut(s)	54, 260
BsnI	GGCC	1 cut(s)	314
Bsp1286I	GDGCHC	1 cut(s)	267
BspANI	GGCC	1 cut(s)	314
BspFNI	CGCG	2 cut(s)	169, 208
BspLI	GGNNCC	4 cut(s)	21, 212, 248, 331
BsrBI	CCGCTC	2 cut(s)	12, 27
BsrI	ACTGG	2 cut(s)	245, 307
BssNI	GRCGYC	1 cut(s)	363
BssSI	CACGAG	1 cut(s)	218
Bst2BI	CACGAG	1 cut(s)	218
Bst6I	CTCTTC	1 cut(s)	41
BstACI	GRCGYC	1 cut(s)	363
BstC8I	GCNNGC	1 cut(s)	215
BstFNI	CGCG	2 cut(s)	169, 208
BstH2I	RGCGCY	1 cut(s)	285
BstHHI	GCGC	3 cut(s)	127, 208, 284
BstMAI	GTCTC	3 cut(s)	313, 361, 370
BstMCI	CGRYCG	1 cut(s)	134
BstMWI	GCNNNNNNNGC	3 cut(s)	33, 214, 332
BstSCI	CCNGG	1 cut(s)	84
BstSFI	CTRYAG	1 cut(s)	178
BstUI	CGCG	2 cut(s)	169, 208
BstV2I	GAAGAC	1 cut(s)	236
BsuRI	GGCC	1 cut(s)	314
BtsIMutI	CAGTG	1 cut(s)	300
Cac8I	GCNNGC	1 cut(s)	215
CfoI	GCGC	3 cut(s)	127, 208, 284
Cfr13I	GGNCC	3 cut(s)	171, 247, 329
CpoI	CGGWCCG	1 cut(s)	171
CseI	GACGC	2 cut(s)	241, 352
CspI	CGGWCCG	1 cut(s)	171
CviAII	CATG	1 cut(s)	343
CviJI	RGCY	6 cut(s)	105, 190, 213, 265, 272, 314
CviKI_1	RGCY	6 cut(s)	105, 190, 213, 265, 272, 314
DriI	GACNNNNNGTC	1 cut(s)	335
Eam1104I	CTCTTC	1 cut(s)	41
Eam1105I	GACNNNNNGTC	1 cut(s)	335
EarI	CTCTTC	1 cut(s)	41
EciI	GGCGGA	3 cut(s)	45, 163, 358
Eco24I	GRGCYC	1 cut(s)	267
Eco47I	GGWCC	3 cut(s)	171, 247, 329
Eco57I	CTGAAG	1 cut(s)	65
EcoO109I	RGGNCCY	1 cut(s)	247
EcoT38I	GRGCYC	1 cut(s)	267
Esp3I	CGTCTC	2 cut(s)	361, 370
FaeI	CATG	1 cut(s)	346
FaiI	YATR	1 cut(s)	344
FaqI	GGGAC	2 cut(s)	54, 260
FatI	CATG	1 cut(s)	342
FauI	CCCGC	1 cut(s)	340
FblI	GTMKAC	1 cut(s)	134
Fnu4HI	GCNGC	1 cut(s)	28
FriOI	GRGCYC	1 cut(s)	267
Fsp4HI	GCNGC	1 cut(s)	28
GlaI	GCGC	3 cut(s)	126, 207, 283
GluI	GCNGC	1 cut(s)	28
GsaI	CCCAGC	1 cut(s)	109
HaeII	RGCGCY	1 cut(s)	285
HaeIII	GGCC	1 cut(s)	314
HapII	CCGG	5 cut(s)	86, 130, 140, 327, 360
HgaI	GACGC	2 cut(s)	241, 352
HhaI	GCGC	3 cut(s)	127, 208, 284
Hin1I	GRCGYC	1 cut(s)	363
Hin1II	CATG	1 cut(s)	346
Hin6I	GCGC	3 cut(s)	125, 206, 282
HinP1I	GCGC	3 cut(s)	125, 206, 282
HincII	GTYRAC	1 cut(s)	135
HindII	GTYRAC	1 cut(s)	135
HinfI	GANTC	5 cut(s)	92, 136, 288, 306, 412
HpaII	CCGG	5 cut(s)	86, 130, 140, 327, 360
HphI	GGTGA	1 cut(s)	211
Hpy166II	GTNNAC	1 cut(s)	135
Hpy188I	TCNGA	1 cut(s)	269
Hpy188III	TCNNGA	2 cut(s)	100, 409
Hpy8I	GTNNAC	1 cut(s)	135
Hpy99I	CGWCG	3 cut(s)	341, 356, 410
HpyAV	CCTTC	1 cut(s)	196
HpyCH4IV	ACGT	1 cut(s)	351
HpyCH4V	TGCA	1 cut(s)	422
HpyF10VI	GCNNNNNNNGC	3 cut(s)	33, 214, 332
HpySE526I	ACGT	1 cut(s)	351
Hsp92I	GRCGYC	1 cut(s)	363
Hsp92II	CATG	1 cut(s)	346
HspAI	GCGC	3 cut(s)	125, 206, 282
LmnI	GCTCC	3 cut(s)	132, 210, 269
MaeII	ACGT	1 cut(s)	351
MaeIII	GTNAC	1 cut(s)	389
MbiI	CCGCTC	2 cut(s)	12, 27
MboII	GAAGA	5 cut(s)	58, 154, 238, 241, 283
MhlI	GDGCHC	1 cut(s)	267
MluCI	AATT	1 cut(s)	112
MlyI	GAGTC	2 cut(s)	101, 130
MnlI	CCTC	9 cut(s)	26, 31, 42, 82, 138, 190, 260, 304, 308
MspI	CCGG	5 cut(s)	86, 130, 140, 327, 360
MspR9I	CCNGG	1 cut(s)	86
MvnI	CGCG	2 cut(s)	169, 208
MwoI	GCNNNNNNNGC	3 cut(s)	33, 214, 332
NciI	CCSGG	1 cut(s)	86
NlaIII	CATG	1 cut(s)	346
NlaIV	GGNNCC	4 cut(s)	21, 212, 248, 331
PcsI	WCGNNNNNNNCGW	2 cut(s)	140, 360
PfeI	GAWTC	3 cut(s)	288, 306, 412
PfoI	TCCNGGA	1 cut(s)	84
PkrI	GCNGC	1 cut(s)	29
PleI	GAGTC	2 cut(s)	100, 130
PpsI	GAGTC	2 cut(s)	100, 130
PpuMI	RGGWCCY	1 cut(s)	247
Psp5II	RGGWCCY	1 cut(s)	247
PspFI	CCCAGC	1 cut(s)	105
PspN4I	GGNNCC	4 cut(s)	21, 212, 248, 331
PspPI	GGNCC	3 cut(s)	171, 247, 329
PspPPI	RGGWCCY	1 cut(s)	247
Rsr2I	CGGWCCG	1 cut(s)	171
RsrII	CGGWCCG	1 cut(s)	171
SalI	GTCGAC	1 cut(s)	133
SatI	GCNGC	1 cut(s)	28
Sau96I	GGNCC	3 cut(s)	171, 247, 329
SchI	GAGTC	2 cut(s)	101, 130
ScrFI	CCNGG	1 cut(s)	86
SduI	GDGCHC	1 cut(s)	267
SetI	ASST	8 cut(s)	107, 149, 161, 192, 201, 252, 274, 354
SfcI	CTRYAG	1 cut(s)	178
SinI	GGWCC	3 cut(s)	171, 247, 329
Sse9I	AATT	1 cut(s)	112
StyD4I	CCNGG	1 cut(s)	84
TaiI	ACGT	1 cut(s)	354
TaqI	TCGA	4 cut(s)	99, 134, 309, 408
TasI	AATT	1 cut(s)	112
TauI	GCSGC	1 cut(s)	30
TfiI	GAWTC	3 cut(s)	288, 306, 412
TscAI	CASTG	1 cut(s)	307
TspDTI	ATGAA	1 cut(s)	239
TspGWI	ACGGA	1 cut(s)	32
TspRI	CASTG	1 cut(s)	307
VpaK11BI	GGWCC	3 cut(s)	171, 247, 329
XmiI	GTMKAC	1 cut(s)	134

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.