pycom16g10380

cationic amino acid transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0019265
Physical Location & Seq
Reverse (-)
7064842 .. 7065300
459 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g10380.1

Sequence Viewer

Length: 402 bp
ATGGTGGACGATTTTTTTTTCGAGGAGTCGTTCCAAAGCTGCAGTAATTACGTCAGTACGCTAAGGCAGACGCCGGGCCGGTTCGTGGATCAGGTCCTGACTCGGTCGGCAGACAGCACGAAGCTGGTGGAGATGAAGGCGCGAAGTCATACGCTCAACTGGTGGGACCTCATTTGGTTTGGACTTCGCGTTGTCATCGGTGCCGGAATATTAGTGCTCACCGGACTGGAGGTCAAAAATCACGCGGGCCCTGCCATTGTGCTGTTGTACGTCGTCTCGGGGGAGGTGGGGGTGGGGTGGTGGGATGGGGGGTTTAGGTTGGGGAAGGGAGGTGGTCGGGGGGATGGGTTTTCTGGGTTTGTGTTATGTTTTTATTTTTTTTTATTTTTTTTAATAGGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AA_permease_2 AA_permease_C

Protein Analysis

134

Amino Acids

14.8

Weight (kDa)

6.06

Isoelectric Point (pI)

28.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019265)

Species Orthologous Gene IDs
malus_domestica MD10G1226700.v1.1
pyrus_communis pycom16g10380
rosa_multiflora Rmu_co7960940.1_g000001 Rmu_sc0030939.1_g000001
rosa_roxburghii Rroxscaffold_1G00060850
rosa_samantha Rh5BG121300 Rh5CG131500 Rh5DG120100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 200
AccII CGCG 3 cut(s) 142, 189, 245
AciI CCGC 1 cut(s) 245
AclWI GGATC 1 cut(s) 96
AcyI GRCGYC 1 cut(s) 71
AfaI GTAC 2 cut(s) 58, 269
AfiI CCNNNNNNNGG 1 cut(s) 85
AhdI GACNNNNNGTC 1 cut(s) 230
AluBI AGCT 2 cut(s) 39, 124
AluI AGCT 2 cut(s) 39, 124
Alw21I GWGCWC 1 cut(s) 219
Alw26I GTCTC 1 cut(s) 280
AlwI GGATC 1 cut(s) 96
AlwNI CAGNNNCTG 1 cut(s) 97
Ama87I CYCGRG 1 cut(s) 277
AoxI GGCC 2 cut(s) 76, 247
ApaI GGGCCC 1 cut(s) 251
ApeKI GCWGC 1 cut(s) 39
AspLEI GCGC 1 cut(s) 142
AspS9I GGNCC 5 cut(s) 76, 94, 166, 247, 248
AsuC2I CCSGG 1 cut(s) 75
AsuHPI GGTGA 1 cut(s) 211
AvaI CYCGRG 1 cut(s) 277
AvaII GGWCC 2 cut(s) 94, 166
BaeGI GKGCMC 1 cut(s) 251
BanI GGYRCC 1 cut(s) 200
BanII GRGCYC 1 cut(s) 251
Bbv12I GWGCWC 1 cut(s) 219
BbvI GCAGC 1 cut(s) 26
BccI CCATC 2 cut(s) 299, 338
BcnI CCSGG 1 cut(s) 75
BcoDI GTCTC 1 cut(s) 280
BfmI CTRYAG 1 cut(s) 40
BisI GCNGC 1 cut(s) 40
BlsI GCNGC 1 cut(s) 41
Bme1390I CCNGG 1 cut(s) 75
Bme18I GGWCC 2 cut(s) 94, 166
BmeRI GACNNNNNGTC 1 cut(s) 230
BmeT110I CYCGRG 1 cut(s) 277
BmgT120I GGNCC 5 cut(s) 76, 94, 166, 247, 248
BmiI GGNNCC 3 cut(s) 167, 202, 249
BmrFI CCNGG 1 cut(s) 75
BpmI CTGGAG 1 cut(s) 248
Bpu10I CCTNAGC 1 cut(s) 62
BpuMI CCSGG 1 cut(s) 75
BsaHI GRCGYC 1 cut(s) 71
BsaWI WCCGGW 1 cut(s) 221
Bsc4I CCNNNNNNNGG 1 cut(s) 85
Bse118I RCCGGY 1 cut(s) 78
Bse1I ACTGG 2 cut(s) 164, 231
BseGI GGATG 2 cut(s) 310, 349
BseLI CCNNNNNNNGG 1 cut(s) 85
BseNI ACTGG 2 cut(s) 164, 231
BseRI GAGGAG 1 cut(s) 38
BseSI GKGCMC 1 cut(s) 251
BseXI GCAGC 1 cut(s) 26
Bsh1236I CGCG 3 cut(s) 142, 189, 245
Bsh1285I CGRYCG 1 cut(s) 107
BshFI GGCC 2 cut(s) 78, 249
BshNI GGYRCC 1 cut(s) 200
BsiEI CGRYCG 1 cut(s) 107
BsiHKAI GWGCWC 1 cut(s) 219
BsiHKCI CYCGRG 1 cut(s) 277
BsiSI CCGG 4 cut(s) 74, 79, 204, 222
BslFI GGGAC 1 cut(s) 179
BslI CCNNNNNNNGG 1 cut(s) 85
BsmAI GTCTC 1 cut(s) 280
BsmBI CGTCTC 1 cut(s) 280
BsmFI GGGAC 1 cut(s) 179
BsnI GGCC 2 cut(s) 78, 249
BsoBI CYCGRG 1 cut(s) 277
Bsp120I GGGCCC 1 cut(s) 247
Bsp1286I GDGCHC 2 cut(s) 219, 251
Bsp143I GATC 1 cut(s) 88
BspACI CCGC 1 cut(s) 245
BspANI GGCC 2 cut(s) 78, 249
BspFNI CGCG 3 cut(s) 142, 189, 245
BspLI GGNNCC 3 cut(s) 167, 202, 249
BspMAI CTGCAG 1 cut(s) 44
BspPI GGATC 1 cut(s) 96
BspT107I GGYRCC 1 cut(s) 200
BsrFI RCCGGY 1 cut(s) 78
BsrI ACTGG 2 cut(s) 164, 231
BssAI RCCGGY 1 cut(s) 78
BssMI GATC 1 cut(s) 88
BssNI GRCGYC 1 cut(s) 71
BstACI GRCGYC 1 cut(s) 71
BstC8I GCNNGC 1 cut(s) 247
BstDEI CTNAG 1 cut(s) 62
BstF5I GGATG 2 cut(s) 310, 349
BstFNI CGCG 3 cut(s) 142, 189, 245
BstHHI GCGC 1 cut(s) 142
BstKTI GATC 1 cut(s) 91
BstMAI GTCTC 1 cut(s) 280
BstMBI GATC 1 cut(s) 88
BstMCI CGRYCG 1 cut(s) 107
BstMWI GCNNNNNNNGC 1 cut(s) 251
BstSCI CCNGG 1 cut(s) 73
BstSFI CTRYAG 1 cut(s) 40
BstSLI GKGCMC 1 cut(s) 251
BstUI CGCG 3 cut(s) 142, 189, 245
BstV1I GCAGC 1 cut(s) 26
BsuRI GGCC 2 cut(s) 78, 249
BtsCI GGATG 2 cut(s) 310, 349
Cac8I GCNNGC 1 cut(s) 247
CaiI CAGNNNCTG 1 cut(s) 97
CfoI GCGC 1 cut(s) 142
Cfr10I RCCGGY 1 cut(s) 78
Cfr13I GGNCC 5 cut(s) 76, 94, 166, 247, 248
CseI GACGC 1 cut(s) 79
Csp6I GTAC 2 cut(s) 57, 268
CviJI RGCY 4 cut(s) 39, 78, 124, 249
CviKI_1 RGCY 4 cut(s) 39, 78, 124, 249
CviQI GTAC 2 cut(s) 57, 268
DdeI CTNAG 1 cut(s) 62
DpnI GATC 1 cut(s) 90
DpnII GATC 1 cut(s) 88
DriI GACNNNNNGTC 1 cut(s) 230
Eam1105I GACNNNNNGTC 1 cut(s) 230
Eco24I GRGCYC 1 cut(s) 251
Eco47I GGWCC 2 cut(s) 94, 166
Eco88I CYCGRG 1 cut(s) 277
EcoO109I RGGNCCY 3 cut(s) 94, 166, 248
EcoT38I GRGCYC 1 cut(s) 251
Esp3I CGTCTC 1 cut(s) 280
FaiI YATR 2 cut(s) 150, 367
FaqI GGGAC 1 cut(s) 179
FauI CCCGC 1 cut(s) 238
Fnu4HI GCNGC 1 cut(s) 40
FokI GGATG 2 cut(s) 317, 356
FriOI GRGCYC 1 cut(s) 251
Fsp4HI GCNGC 1 cut(s) 40
GlaI GCGC 1 cut(s) 141
GluI GCNGC 1 cut(s) 40
GsuI CTGGAG 1 cut(s) 248
HaeIII GGCC 2 cut(s) 78, 249
HapII CCGG 4 cut(s) 74, 79, 204, 222
HgaI GACGC 1 cut(s) 79
HhaI GCGC 1 cut(s) 142
Hin1I GRCGYC 1 cut(s) 71
Hin6I GCGC 1 cut(s) 140
HinP1I GCGC 1 cut(s) 140
HinfI GANTC 2 cut(s) 26, 100
HpaII CCGG 4 cut(s) 74, 79, 204, 222
HphI GGTGA 1 cut(s) 211
Hpy166II GTNNAC 1 cut(s) 7
Hpy188III TCNNGA 1 cut(s) 97
Hpy8I GTNNAC 1 cut(s) 7
Hpy99I CGWCG 1 cut(s) 275
HpyAV CCTTC 2 cut(s) 130, 319
HpyCH4IV ACGT 2 cut(s) 51, 270
HpyCH4V TGCA 1 cut(s) 42
HpyF10VI GCNNNNNNNGC 1 cut(s) 251
HpyF3I CTNAG 1 cut(s) 62
HpySE526I ACGT 2 cut(s) 51, 270
Hsp92I GRCGYC 1 cut(s) 71
HspAI GCGC 1 cut(s) 140
Kzo9I GATC 1 cut(s) 88
Lsp1109I GCAGC 1 cut(s) 26
MaeII ACGT 2 cut(s) 51, 270
MalI GATC 1 cut(s) 90
MboI GATC 1 cut(s) 88
MhlI GDGCHC 2 cut(s) 219, 251
MluCI AATT 1 cut(s) 46
MlyI GAGTC 2 cut(s) 35, 94
MnlI CCTC 5 cut(s) 16, 179, 223, 277, 323
MseI TTAA 1 cut(s) 392
MspI CCGG 4 cut(s) 74, 79, 204, 222
MspR9I CCNGG 1 cut(s) 75
MvnI CGCG 3 cut(s) 142, 189, 245
MwoI GCNNNNNNNGC 1 cut(s) 251
NciI CCSGG 1 cut(s) 75
NdeII GATC 1 cut(s) 88
NlaIV GGNNCC 3 cut(s) 167, 202, 249
PflFI GACNNNGTC 1 cut(s) 103
PkrI GCNGC 1 cut(s) 41
PleI GAGTC 2 cut(s) 34, 94
PpsI GAGTC 2 cut(s) 34, 94
PpuMI RGGWCCY 2 cut(s) 94, 166
Psp5II RGGWCCY 2 cut(s) 94, 166
PspN4I GGNNCC 3 cut(s) 167, 202, 249
PspOMI GGGCCC 1 cut(s) 247
PspPI GGNCC 5 cut(s) 76, 94, 166, 247, 248
PspPPI RGGWCCY 2 cut(s) 94, 166
PstI CTGCAG 1 cut(s) 44
PstNI CAGNNNCTG 1 cut(s) 97
PsyI GACNNNGTC 1 cut(s) 103
RsaI GTAC 2 cut(s) 58, 269
RsaNI GTAC 2 cut(s) 57, 268
SaqAI TTAA 1 cut(s) 392
SatI GCNGC 1 cut(s) 40
Sau3AI GATC 1 cut(s) 88
Sau96I GGNCC 5 cut(s) 76, 94, 166, 247, 248
SchI GAGTC 2 cut(s) 35, 94
ScrFI CCNGG 1 cut(s) 75
SduI GDGCHC 2 cut(s) 219, 251
SfcI CTRYAG 1 cut(s) 40
SinI GGWCC 2 cut(s) 94, 166
Sse9I AATT 1 cut(s) 46
SsiI CCGC 1 cut(s) 245
SspI AATATT 1 cut(s) 210
StyD4I CCNGG 1 cut(s) 73
TaiI ACGT 2 cut(s) 54, 273
TaqI TCGA 1 cut(s) 21
TaqII GACCGA 1 cut(s) 93
TasI AATT 1 cut(s) 46
Tru1I TTAA 1 cut(s) 392
Tru9I TTAA 1 cut(s) 392
TseI GCWGC 1 cut(s) 39
TspDTI ATGAA 1 cut(s) 149
Tth111I GACNNNGTC 1 cut(s) 103
VpaK11BI GGWCC 2 cut(s) 94, 166
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.