Rmu_sc0030939.1_g000001

cationic amino acid transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0030939.1
OG0019265
Physical Location & Seq
Forward (+)
1 .. 801
801 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0030939.1_g000001.1.cds

Sequence Viewer

Length: 492 bp
ttttctccatctctagggctttttactagcgaatcaacaaggatggggatgagcggaacggaaccgagcggaggcggcggcggcgaggggctgaagaggagggggtgttcgtgcggaaagaacgatttcctcccggaggagtcgttcgagagctggggcaattacgccaatgcgctccggtcgactccggcgaggttcaaggaccggttcttcacgcggtcagccgacagcaccgagctggtggaggtgaaggcgcggagccagcacgagatgaagaagacgctcaactggtgggacctcatctggttcgggctcggagccgtcatcggcgccggaatcttcgtcctcactggactcgaggccaagaaacacgccggacccgccgtcgtcatgtcctacgtcgtctccggcgtctccgccttgctctctgttttctgttacacagagttcgccgtcgagattcccgttgcaggtaccactaataagcattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AA_permease_2 AA_permease_C

Protein Analysis

163

Amino Acids

17.58

Weight (kDa)

7.91

Isoelectric Point (pI)

52.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019265)

Species Orthologous Gene IDs
malus_domestica MD10G1226700.v1.1
pyrus_communis pycom16g10380
rosa_multiflora Rmu_co7960940.1_g000001 Rmu_sc0030939.1_g000001
rosa_roxburghii Rroxscaffold_1G00060850
rosa_samantha Rh5BG121300 Rh5CG131500 Rh5DG120100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 461
Acc65I GGTACC 1 cut(s) 473
AccB1I GGYRCC 2 cut(s) 329, 473
AccBSI CCGCTC 2 cut(s) 54, 69
AccI GTMKAC 1 cut(s) 182
AccII CGCG 2 cut(s) 217, 256
AcuI CTGAAG 1 cut(s) 113
AcyI GRCGYC 2 cut(s) 330, 411
AfaI GTAC 1 cut(s) 475
AfiI CCNNNNNNNGG 4 cut(s) 14, 71, 136, 470
AgeI ACCGGT 1 cut(s) 204
AgsI TTSAA 1 cut(s) 199
AhdI GACNNNNNGTC 1 cut(s) 383
AloI GAACNNNNNNTCC 4 cut(s) 91, 123, 128, 160
AluBI AGCT 2 cut(s) 153, 238
AluI AGCT 2 cut(s) 153, 238
Alw26I GTCTC 2 cut(s) 409, 418
Ama87I CYCGRG 1 cut(s) 356
AoxI GGCC 1 cut(s) 360
AsiGI ACCGGT 1 cut(s) 204
Asp700I GAANNNNTTC 1 cut(s) 125
Asp718I GGTACC 1 cut(s) 473
AspLEI GCGC 3 cut(s) 175, 256, 332
AspS9I GGNCC 3 cut(s) 202, 295, 377
AsuC2I CCSGG 1 cut(s) 134
AsuHPI GGTGA 1 cut(s) 259
AvaI CYCGRG 1 cut(s) 356
AvaII GGWCC 3 cut(s) 202, 295, 377
BanI GGYRCC 2 cut(s) 329, 473
BanII GRGCYC 1 cut(s) 315
BauI CACGAG 1 cut(s) 266
BbsI GAAGAC 1 cut(s) 284
BccI CCATC 2 cut(s) 16, 37
BceAI ACGGC 3 cut(s) 305, 368, 437
BcnI CCSGG 1 cut(s) 134
BcoDI GTCTC 2 cut(s) 409, 418
BfaI CTAG 2 cut(s) 14, 27
BfoI RGCGCY 1 cut(s) 333
BfuAI ACCTGC 1 cut(s) 461
BisI GCNGC 3 cut(s) 76, 79, 82
BlsI GCNGC 3 cut(s) 77, 80, 83
Bme1390I CCNGG 1 cut(s) 134
Bme18I GGWCC 3 cut(s) 202, 295, 377
BmeRI GACNNNNNGTC 1 cut(s) 383
BmeT110I CYCGRG 1 cut(s) 356
BmgT120I GGNCC 3 cut(s) 202, 295, 377
BmiI GGNNCC 7 cut(s) 63, 260, 296, 319, 331, 379, 475
BmrFI CCNGG 1 cut(s) 134
BpiI GAAGAC 1 cut(s) 284
BpuMI CCSGG 1 cut(s) 134
BsaHI GRCGYC 2 cut(s) 330, 411
BsaWI WCCGGW 2 cut(s) 177, 204
BsaXI ACNNNNNCTCC 6 cut(s) 91, 121, 128, 158, 389, 419
Bsc4I CCNNNNNNNGG 4 cut(s) 14, 71, 136, 470
Bse118I RCCGGY 1 cut(s) 204
Bse1I ACTGG 2 cut(s) 293, 355
BseGI GGATG 2 cut(s) 48, 54
BseLI CCNNNNNNNGG 4 cut(s) 14, 71, 136, 470
BseNI ACTGG 2 cut(s) 293, 355
BseRI GAGGAG 2 cut(s) 112, 152
BseYI CCCAGC 1 cut(s) 153
Bsh1236I CGCG 2 cut(s) 217, 256
Bsh1285I CGRYCG 1 cut(s) 182
BshFI GGCC 1 cut(s) 362
BshNI GGYRCC 2 cut(s) 329, 473
BshTI ACCGGT 1 cut(s) 204
BsiEI CGRYCG 1 cut(s) 182
BsiHKCI CYCGRG 1 cut(s) 356
BsiSI CCGG 7 cut(s) 134, 178, 188, 205, 333, 375, 408
BslFI GGGAC 1 cut(s) 308
BslI CCNNNNNNNGG 4 cut(s) 14, 71, 136, 470
BsmAI GTCTC 2 cut(s) 409, 418
BsmBI CGTCTC 2 cut(s) 409, 418
BsmFI GGGAC 1 cut(s) 308
BsnI GGCC 1 cut(s) 362
BsoBI CYCGRG 1 cut(s) 356
Bsp1286I GDGCHC 1 cut(s) 315
BspANI GGCC 1 cut(s) 362
BspFNI CGCG 2 cut(s) 217, 256
BspLI GGNNCC 7 cut(s) 63, 260, 296, 319, 331, 379, 475
BspMI ACCTGC 1 cut(s) 461
BspT107I GGYRCC 2 cut(s) 329, 473
BsrBI CCGCTC 2 cut(s) 54, 69
BsrFI RCCGGY 1 cut(s) 204
BsrI ACTGG 2 cut(s) 293, 355
BssAI RCCGGY 1 cut(s) 204
BssNI GRCGYC 2 cut(s) 330, 411
BssSI CACGAG 1 cut(s) 266
Bst2BI CACGAG 1 cut(s) 266
Bst6I CTCTTC 1 cut(s) 89
BstACI GRCGYC 2 cut(s) 330, 411
BstC8I GCNNGC 1 cut(s) 263
BstENI CCTNNNNNAGG 1 cut(s) 134
BstF5I GGATG 2 cut(s) 48, 54
BstFNI CGCG 2 cut(s) 217, 256
BstH2I RGCGCY 1 cut(s) 333
BstHHI GCGC 3 cut(s) 175, 256, 332
BstMAI GTCTC 2 cut(s) 409, 418
BstMCI CGRYCG 1 cut(s) 182
BstMWI GCNNNNNNNGC 4 cut(s) 75, 81, 262, 380
BstSCI CCNGG 1 cut(s) 132
BstUI CGCG 2 cut(s) 217, 256
BstV2I GAAGAC 1 cut(s) 284
BsuRI GGCC 1 cut(s) 362
BtsCI GGATG 2 cut(s) 48, 54
BtsIMutI CAGTG 1 cut(s) 348
BveI ACCTGC 1 cut(s) 461
Cac8I GCNNGC 1 cut(s) 263
CfoI GCGC 3 cut(s) 175, 256, 332
Cfr10I RCCGGY 1 cut(s) 204
Cfr13I GGNCC 3 cut(s) 202, 295, 377
CseI GACGC 2 cut(s) 289, 400
Csp6I GTAC 1 cut(s) 474
CspAI ACCGGT 1 cut(s) 204
CviAII CATG 1 cut(s) 391
CviJI RGCY 9 cut(s) 19, 91, 153, 224, 238, 261, 313, 320, 362
CviKI_1 RGCY 9 cut(s) 19, 91, 153, 224, 238, 261, 313, 320, 362
CviQI GTAC 1 cut(s) 474
DinI GGCGCC 1 cut(s) 331
DriI GACNNNNNGTC 1 cut(s) 383
Eam1104I CTCTTC 1 cut(s) 89
Eam1105I GACNNNNNGTC 1 cut(s) 383
EarI CTCTTC 1 cut(s) 89
EciI GGCGGA 1 cut(s) 406
Eco24I GRGCYC 1 cut(s) 315
Eco47I GGWCC 3 cut(s) 202, 295, 377
Eco57I CTGAAG 1 cut(s) 113
Eco88I CYCGRG 1 cut(s) 356
EcoNI CCTNNNNNAGG 1 cut(s) 134
EcoO109I RGGNCCY 1 cut(s) 295
EcoT38I GRGCYC 1 cut(s) 315
EgeI GGCGCC 1 cut(s) 331
EheI GGCGCC 1 cut(s) 331
Esp3I CGTCTC 2 cut(s) 409, 418
FaeI CATG 1 cut(s) 394
FaiI YATR 1 cut(s) 392
FaqI GGGAC 1 cut(s) 308
FatI CATG 1 cut(s) 390
FauI CCCGC 1 cut(s) 388
FblI GTMKAC 1 cut(s) 182
Fnu4HI GCNGC 3 cut(s) 76, 79, 82
FokI GGATG 2 cut(s) 55, 61
FriOI GRGCYC 1 cut(s) 315
Fsp4HI GCNGC 3 cut(s) 76, 79, 82
FspBI CTAG 2 cut(s) 14, 27
GlaI GCGC 3 cut(s) 174, 255, 331
GluI GCNGC 3 cut(s) 76, 79, 82
GsaI CCCAGC 1 cut(s) 157
HaeII RGCGCY 1 cut(s) 333
HaeIII GGCC 1 cut(s) 362
HapII CCGG 7 cut(s) 134, 178, 188, 205, 333, 375, 408
HgaI GACGC 2 cut(s) 289, 400
HhaI GCGC 3 cut(s) 175, 256, 332
Hin1I GRCGYC 2 cut(s) 330, 411
Hin1II CATG 1 cut(s) 394
Hin6I GCGC 3 cut(s) 173, 254, 330
HinP1I GCGC 3 cut(s) 173, 254, 330
HincII GTYRAC 1 cut(s) 183
HindII GTYRAC 1 cut(s) 183
HinfI GANTC 6 cut(s) 32, 140, 184, 336, 354, 460
HpaII CCGG 7 cut(s) 134, 178, 188, 205, 333, 375, 408
HphI GGTGA 1 cut(s) 259
Hpy166II GTNNAC 1 cut(s) 183
Hpy188I TCNGA 1 cut(s) 317
Hpy188III TCNNGA 2 cut(s) 148, 457
Hpy8I GTNNAC 1 cut(s) 183
Hpy99I CGWCG 3 cut(s) 389, 404, 458
HpyAV CCTTC 1 cut(s) 244
HpyCH4IV ACGT 1 cut(s) 399
HpyCH4V TGCA 1 cut(s) 470
HpyF10VI GCNNNNNNNGC 4 cut(s) 75, 81, 262, 380
HpySE526I ACGT 1 cut(s) 399
Hsp92I GRCGYC 2 cut(s) 330, 411
Hsp92II CATG 1 cut(s) 394
HspAI GCGC 3 cut(s) 173, 254, 330
KasI GGCGCC 1 cut(s) 329
KpnI GGTACC 1 cut(s) 477
LmnI GCTCC 3 cut(s) 180, 258, 317
MaeI CTAG 2 cut(s) 14, 27
MaeII ACGT 1 cut(s) 399
MaeIII GTNAC 1 cut(s) 437
MbiI CCGCTC 2 cut(s) 54, 69
MboII GAAGA 5 cut(s) 106, 202, 286, 289, 331
MhlI GDGCHC 1 cut(s) 315
MluCI AATT 1 cut(s) 160
Mly113I GGCGCC 1 cut(s) 330
MlyI GAGTC 3 cut(s) 149, 178, 348
MroXI GAANNNNTTC 1 cut(s) 125
MseI TTAA 1 cut(s) 490
MspI CCGG 7 cut(s) 134, 178, 188, 205, 333, 375, 408
MspR9I CCNGG 1 cut(s) 134
MvnI CGCG 2 cut(s) 217, 256
MwoI GCNNNNNNNGC 4 cut(s) 75, 81, 262, 380
NarI GGCGCC 1 cut(s) 330
NciI CCSGG 1 cut(s) 134
NlaIII CATG 1 cut(s) 394
NlaIV GGNNCC 7 cut(s) 63, 260, 296, 319, 331, 379, 475
PaeR7I CTCGAG 1 cut(s) 356
PcsI WCGNNNNNNNCGW 3 cut(s) 188, 408, 462
PdmI GAANNNNTTC 1 cut(s) 125
PfeI GAWTC 3 cut(s) 32, 336, 460
PfoI TCCNGGA 1 cut(s) 132
PinAI ACCGGT 1 cut(s) 204
PkrI GCNGC 3 cut(s) 77, 80, 83
PleI GAGTC 3 cut(s) 148, 178, 348
PluTI GGCGCC 1 cut(s) 333
PpsI GAGTC 3 cut(s) 148, 178, 348
PpuMI RGGWCCY 1 cut(s) 295
Psp5II RGGWCCY 1 cut(s) 295
PspFI CCCAGC 1 cut(s) 153
PspN4I GGNNCC 7 cut(s) 63, 260, 296, 319, 331, 379, 475
PspPI GGNCC 3 cut(s) 202, 295, 377
PspPPI RGGWCCY 1 cut(s) 295
PspXI VCTCGAGB 1 cut(s) 356
RsaI GTAC 1 cut(s) 475
RsaNI GTAC 1 cut(s) 474
SalI GTCGAC 1 cut(s) 181
SaqAI TTAA 1 cut(s) 490
SatI GCNGC 3 cut(s) 76, 79, 82
Sau96I GGNCC 3 cut(s) 202, 295, 377
SchI GAGTC 3 cut(s) 149, 178, 348
ScrFI CCNGG 1 cut(s) 134
SduI GDGCHC 1 cut(s) 315
SetI ASST 7 cut(s) 155, 197, 240, 249, 300, 402, 475
SfoI GGCGCC 1 cut(s) 331
Sfr274I CTCGAG 1 cut(s) 356
SinI GGWCC 3 cut(s) 202, 295, 377
SlaI CTCGAG 1 cut(s) 356
SmlI CTYRAG 1 cut(s) 356
SmoI CTYRAG 1 cut(s) 356
Sse9I AATT 1 cut(s) 160
SspDI GGCGCC 1 cut(s) 329
SspMI CTAG 2 cut(s) 14, 27
StyD4I CCNGG 1 cut(s) 132
TaiI ACGT 1 cut(s) 402
TaqI TCGA 4 cut(s) 147, 182, 357, 456
TasI AATT 1 cut(s) 160
TauI GCSGC 3 cut(s) 78, 81, 84
TfiI GAWTC 3 cut(s) 32, 336, 460
Tru1I TTAA 1 cut(s) 490
Tru9I TTAA 1 cut(s) 490
TscAI CASTG 1 cut(s) 355
TspDTI ATGAA 1 cut(s) 287
TspGWI ACGGA 1 cut(s) 74
TspRI CASTG 1 cut(s) 355
VpaK11BI GGWCC 3 cut(s) 202, 295, 377
XagI CCTNNNNNAGG 1 cut(s) 134
XhoI CTCGAG 1 cut(s) 356
XmiI GTMKAC 1 cut(s) 182
XmnI GAANNNNTTC 1 cut(s) 125
XspI CTAG 2 cut(s) 14, 27
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.