Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0019265

Physical Location & Seq

Genomic Coordinates Forward (+)

11024120 .. 11028365

Gene Structure 4246 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG131500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGTTACTTCGCTCAAAACTTGAAGGAAGGCCACCAAGTTGCAGGCTCTCACACAAAGAAATAGCCACCTCTGTTGTAGATAGTGACAATCCAATTGGTCATATAATTTTCACAATGATAGGAGACAAAAATGGAGAGCCCAAACAGGCTATGGCTATAAAGAAGGTTTTACAATGCAGATTCAAAGAAGTGAGCTCTCTATCCAGACTAAACACTAATGGTAATGAGATTCCACATTCAAATGCAAGCATTCAAGAGATGGGGATGAGCGGAACGGAACCGAGCGGCGGAGGAGAGGGACTGAAGAGGTGGGGGTGTTCGTGCGGAAAGAACGATTTTCTCCCGGAGGAGTCGTTCGAGAGCTGGGGCAATTACGCCAATGCGCTCCGGTCCACTCCGGCGAGGTTCAAGGACAGGTTCTTCACTCGGTCCGCCTACAGCACCGAGCTGGTGGAGGTGAAGGCGCGGAGCCAGCACGAGATGAAGAAGACGCTTGACTGGTGGGACCTCATCTGGTTCGGGCTCGGAGCTGTCATCGGCGCTGGAATCTTCGTCCTCACTGGATTCGAGGCCAAGAAACACGCCGGACCCGCCGTCGTCGTGTCCTACGTCGTCTCCGGCGTCTCCGCCTTGCTCTCTGTTTTCTGTTACACAGAGTTCGCCGTCGAGATTCCCGTTGCAGGTAACACTAATAAGCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AA_permease_2 AA_permease_C

Protein Analysis

233

Amino Acids

25.55

Weight (kDa)

8.56

Isoelectric Point (pI)

44.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AA_permease_2	PF13520	165 - 228	4.3e-06	Amino acid permease
AA_permease	PF00324	170 - 231	7.2e-06	Amino acid permease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019265)

Species	Orthologous Gene IDs
malus_domestica	MD10G1226700.v1.1
pyrus_communis	pycom16g10380
rosa_multiflora	Rmu_co7960940.1_g000001 Rmu_sc0030939.1_g000001
rosa_roxburghii	Rroxscaffold_1G00060850
rosa_samantha	Rh5BG121300 Rh5CG131500 Rh5DG120100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	671
AccBSI	CCGCTC	2 cut(s)	270, 285
AccII	CGCG	1 cut(s)	466
AciI	CCGC	8 cut(s)	270, 285, 288, 324, 432, 466, 591, 627
AcuI	CTGAAG	1 cut(s)	323
AcyI	GRCGYC	1 cut(s)	621
AfiI	CCNNNNNNNGG	2 cut(s)	287, 680
AgsI	TTSAA	5 cut(s)	23, 184, 240, 254, 409
AhdI	GACNNNNNGTC	1 cut(s)	593
AloI	GAACNNNNNNTCC	2 cut(s)	338, 370
AluBI	AGCT	4 cut(s)	195, 363, 448, 530
AluI	AGCT	4 cut(s)	195, 363, 448, 530
Alw21I	GWGCWC	1 cut(s)	197
Alw26I	GTCTC	3 cut(s)	117, 619, 628
AoxI	GGCC	2 cut(s)	29, 570
AspLEI	GCGC	3 cut(s)	385, 466, 542
AspS9I	GGNCC	4 cut(s)	390, 429, 505, 587
AsuC2I	CCSGG	1 cut(s)	344
AsuHPI	GGTGA	1 cut(s)	469
AvaII	GGWCC	4 cut(s)	390, 429, 505, 587
BanII	GRGCYC	3 cut(s)	141, 197, 525
BauI	CACGAG	1 cut(s)	476
BbsI	GAAGAC	1 cut(s)	494
Bbv12I	GWGCWC	1 cut(s)	197
BccI	CCATC	1 cut(s)	253
BceAI	ACGGC	2 cut(s)	578, 647
BcnI	CCSGG	1 cut(s)	344
BcoDI	GTCTC	3 cut(s)	117, 619, 628
BfmI	CTRYAG	1 cut(s)	436
BfoI	RGCGCY	1 cut(s)	543
BfuAI	ACCTGC	1 cut(s)	671
BisI	GCNGC	1 cut(s)	286
BlsI	GCNGC	1 cut(s)	287
Bme1390I	CCNGG	1 cut(s)	344
Bme18I	GGWCC	4 cut(s)	390, 429, 505, 587
BmeRI	GACNNNNNGTC	1 cut(s)	593
BmgT120I	GGNCC	4 cut(s)	390, 429, 505, 587
BmiI	GGNNCC	4 cut(s)	279, 470, 506, 589
BmrFI	CCNGG	1 cut(s)	344
BpiI	GAAGAC	1 cut(s)	494
BpuMI	CCSGG	1 cut(s)	344
BsaHI	GRCGYC	1 cut(s)	621
BsaWI	WCCGGW	1 cut(s)	387
BsaXI	ACNNNNNCTCC	4 cut(s)	338, 368, 599, 629
Bsc4I	CCNNNNNNNGG	2 cut(s)	287, 680
Bse1I	ACTGG	2 cut(s)	503, 565
BseGI	GGATG	1 cut(s)	270
BseLI	CCNNNNNNNGG	2 cut(s)	287, 680
BseNI	ACTGG	2 cut(s)	503, 565
BseRI	GAGGAG	2 cut(s)	306, 362
BseYI	CCCAGC	1 cut(s)	363
Bsh1236I	CGCG	1 cut(s)	466
BshFI	GGCC	2 cut(s)	31, 572
BsiHKAI	GWGCWC	1 cut(s)	197
BsiSI	CCGG	5 cut(s)	344, 388, 398, 585, 618
BslFI	GGGAC	2 cut(s)	312, 518
BslI	CCNNNNNNNGG	2 cut(s)	287, 680
BsmAI	GTCTC	3 cut(s)	117, 619, 628
BsmBI	CGTCTC	2 cut(s)	619, 628
BsmFI	GGGAC	2 cut(s)	312, 518
BsmI	GAATGC	1 cut(s)	249
BsnI	GGCC	2 cut(s)	31, 572
Bsp1286I	GDGCHC	3 cut(s)	141, 197, 525
BspACI	CCGC	8 cut(s)	270, 285, 288, 324, 432, 466, 591, 627
BspANI	GGCC	2 cut(s)	31, 572
BspFNI	CGCG	1 cut(s)	466
BspLI	GGNNCC	4 cut(s)	279, 470, 506, 589
BspMI	ACCTGC	1 cut(s)	671
BsrBI	CCGCTC	2 cut(s)	270, 285
BsrI	ACTGG	2 cut(s)	503, 565
BssNI	GRCGYC	1 cut(s)	621
BssSI	CACGAG	1 cut(s)	476
Bst2BI	CACGAG	1 cut(s)	476
Bst6I	CTCTTC	1 cut(s)	299
BstACI	GRCGYC	1 cut(s)	621
BstC8I	GCNNGC	3 cut(s)	44, 247, 473
BstF5I	GGATG	1 cut(s)	270
BstFNI	CGCG	1 cut(s)	466
BstH2I	RGCGCY	1 cut(s)	543
BstHHI	GCGC	3 cut(s)	385, 466, 542
BstMAI	GTCTC	3 cut(s)	117, 619, 628
BstMWI	GCNNNNNNNGC	2 cut(s)	472, 590
BstSCI	CCNGG	1 cut(s)	342
BstSFI	CTRYAG	1 cut(s)	436
BstUI	CGCG	1 cut(s)	466
BstV2I	GAAGAC	1 cut(s)	494
BsuRI	GGCC	2 cut(s)	31, 572
BtsCI	GGATG	1 cut(s)	270
BtsIMutI	CAGTG	1 cut(s)	558
BveI	ACCTGC	1 cut(s)	671
Cac8I	GCNNGC	3 cut(s)	44, 247, 473
CfoI	GCGC	3 cut(s)	385, 466, 542
Cfr13I	GGNCC	4 cut(s)	390, 429, 505, 587
CpoI	CGGWCCG	1 cut(s)	429
CseI	GACGC	2 cut(s)	499, 610
CspCI	CAANNNNNGTGG	2 cut(s)	55, 90
CspI	CGGWCCG	1 cut(s)	429
DriI	GACNNNNNGTC	1 cut(s)	593
Eam1104I	CTCTTC	1 cut(s)	299
Eam1105I	GACNNNNNGTC	1 cut(s)	593
EarI	CTCTTC	1 cut(s)	299
EciI	GGCGGA	3 cut(s)	303, 421, 616
Ecl136II	GAGCTC	1 cut(s)	195
Eco24I	GRGCYC	3 cut(s)	141, 197, 525
Eco47I	GGWCC	4 cut(s)	390, 429, 505, 587
Eco53kI	GAGCTC	1 cut(s)	195
Eco57I	CTGAAG	1 cut(s)	323
EcoICRI	GAGCTC	1 cut(s)	195
EcoO109I	RGGNCCY	1 cut(s)	505
EcoT38I	GRGCYC	3 cut(s)	141, 197, 525
Esp3I	CGTCTC	2 cut(s)	619, 628
FaiI	YATR	4 cut(s)	102, 104, 152, 158
FaqI	GGGAC	2 cut(s)	312, 518
FauI	CCCGC	1 cut(s)	598
Fnu4HI	GCNGC	1 cut(s)	286
FokI	GGATG	1 cut(s)	277
FriOI	GRGCYC	3 cut(s)	141, 197, 525
Fsp4HI	GCNGC	1 cut(s)	286
GlaI	GCGC	3 cut(s)	384, 465, 541
GluI	GCNGC	1 cut(s)	286
GsaI	CCCAGC	1 cut(s)	367
HaeII	RGCGCY	1 cut(s)	543
HaeIII	GGCC	2 cut(s)	31, 572
HapII	CCGG	5 cut(s)	344, 388, 398, 585, 618
HgaI	GACGC	2 cut(s)	499, 610
HhaI	GCGC	3 cut(s)	385, 466, 542
Hin1I	GRCGYC	1 cut(s)	621
Hin6I	GCGC	3 cut(s)	383, 464, 540
HinP1I	GCGC	3 cut(s)	383, 464, 540
HinfI	GANTC	6 cut(s)	180, 229, 350, 546, 564, 670
HpaII	CCGG	5 cut(s)	344, 388, 398, 585, 618
HphI	GGTGA	1 cut(s)	469
Hpy166II	GTNNAC	1 cut(s)	393
Hpy188I	TCNGA	1 cut(s)	527
Hpy188III	TCNNGA	4 cut(s)	204, 254, 358, 667
Hpy8I	GTNNAC	1 cut(s)	393
Hpy99I	CGWCG	4 cut(s)	599, 602, 614, 668
HpyAV	CCTTC	4 cut(s)	17, 21, 157, 454
HpyCH4IV	ACGT	1 cut(s)	609
HpyCH4V	TGCA	4 cut(s)	42, 177, 245, 680
HpyF10VI	GCNNNNNNNGC	2 cut(s)	472, 590
HpySE526I	ACGT	1 cut(s)	609
Hsp92I	GRCGYC	1 cut(s)	621
HspAI	GCGC	3 cut(s)	383, 464, 540
LmnI	GCTCC	3 cut(s)	390, 468, 527
MaeII	ACGT	1 cut(s)	609
MaeIII	GTNAC	4 cut(s)	3, 83, 647, 683
MbiI	CCGCTC	2 cut(s)	270, 285
MboII	GAAGA	5 cut(s)	316, 412, 496, 499, 541
MfeI	CAATTG	1 cut(s)	93
MhlI	GDGCHC	3 cut(s)	141, 197, 525
MluCI	AATT	3 cut(s)	93, 105, 370
MlyI	GAGTC	1 cut(s)	359
MseI	TTAA	1 cut(s)	700
MslI	CAYNNNNRTG	1 cut(s)	240
MspI	CCGG	5 cut(s)	344, 388, 398, 585, 618
MspR9I	CCNGG	1 cut(s)	344
MunI	CAATTG	1 cut(s)	93
Mva1269I	GAATGC	1 cut(s)	249
MvnI	CGCG	1 cut(s)	466
MwoI	GCNNNNNNNGC	2 cut(s)	472, 590
NciI	CCSGG	1 cut(s)	344
NlaIV	GGNNCC	4 cut(s)	279, 470, 506, 589
NmuCI	GTSAC	1 cut(s)	83
PcsI	WCGNNNNNNNCGW	3 cut(s)	606, 618, 672
PctI	GAATGC	1 cut(s)	249
PfeI	GAWTC	5 cut(s)	180, 229, 546, 564, 670
PfoI	TCCNGGA	1 cut(s)	342
PkrI	GCNGC	1 cut(s)	287
PleI	GAGTC	1 cut(s)	358
PpsI	GAGTC	1 cut(s)	358
PpuMI	RGGWCCY	1 cut(s)	505
Psp124BI	GAGCTC	1 cut(s)	197
Psp5II	RGGWCCY	1 cut(s)	505
PspFI	CCCAGC	1 cut(s)	363
PspN4I	GGNNCC	4 cut(s)	279, 470, 506, 589
PspPI	GGNCC	4 cut(s)	390, 429, 505, 587
PspPPI	RGGWCCY	1 cut(s)	505
RseI	CAYNNNNRTG	1 cut(s)	240
Rsr2I	CGGWCCG	1 cut(s)	429
RsrII	CGGWCCG	1 cut(s)	429
SacI	GAGCTC	1 cut(s)	197
SaqAI	TTAA	1 cut(s)	700
SatI	GCNGC	1 cut(s)	286
Sau96I	GGNCC	4 cut(s)	390, 429, 505, 587
SchI	GAGTC	1 cut(s)	359
ScrFI	CCNGG	1 cut(s)	344
SduI	GDGCHC	3 cut(s)	141, 197, 525
SfcI	CTRYAG	1 cut(s)	436
SinI	GGWCC	4 cut(s)	390, 429, 505, 587
SmiMI	CAYNNNNRTG	1 cut(s)	240
Sse9I	AATT	3 cut(s)	93, 105, 370
SsiI	CCGC	8 cut(s)	270, 285, 288, 324, 432, 466, 591, 627
SstI	GAGCTC	1 cut(s)	197
StyD4I	CCNGG	1 cut(s)	342
TaiI	ACGT	1 cut(s)	612
TaqI	TCGA	3 cut(s)	357, 567, 666
TaqII	GACCGA	1 cut(s)	417
TasI	AATT	3 cut(s)	93, 105, 370
TauI	GCSGC	1 cut(s)	288
TfiI	GAWTC	5 cut(s)	180, 229, 546, 564, 670
Tru1I	TTAA	1 cut(s)	700
Tru9I	TTAA	1 cut(s)	700
TscAI	CASTG	1 cut(s)	565
TseFI	GTSAC	1 cut(s)	83
Tsp45I	GTSAC	1 cut(s)	83
TspDTI	ATGAA	1 cut(s)	497
TspGWI	ACGGA	1 cut(s)	290
TspRI	CASTG	1 cut(s)	565
VpaK11BI	GGWCC	4 cut(s)	390, 429, 505, 587
XcmI	CCANNNNNNNNNTGG	1 cut(s)	148

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.