MD10G1291300.v1.1

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0003690
Physical Location & Seq
Forward (+)
37988715 .. 37992742
4028 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1291300.v1.1.491

Sequence Viewer

Length: 2313 bp
ATGCCTCACAGCGCCGATGACAAATCTCCGGAACCGGCCGAATTCTCCGGCTCCGACATCGAGGAACAAAAAGAAGAAGAAGAAGAAGAAGAAGACCCCGAATTGTTAGAAGAAGAAGTAGAAGAAGAGGAAGAAGAGGAGGCGGAGGAGGCGGAGGCGGAAGAAGAAGAGGCGGAGGGGGAAGAGAATATGGAAGACGAATTAGAAGGAAGGGTTGAAGTGGATATGGATCTTTCAGATTCACCAATTCGATCCCGTGATCATCACAACGGCCAGAGAACCTCTGTACACCTACACAATGAGGTCAATGGTCATCTGTGTAATAGTGAGATTATGGATGCTAAAGTGGCCAGCTCATGTAGAGTTGGCGGGGAAGAGATGGCTGATGCCACCCCGATTAGGGATCATTTAGGTGAGGAGGTTAGAAGTGTTGTGAATCCAGGGGATGAGATGAAACAAGTGGACATGCAGCAGAGGAATGGTAGAAAGCAAATAGATTCAAGGTCAAGTGCTCTTGAGACAGGGACCACAACTGTGTCTCCTGCTGCTGAGACTAGTGGTCGAAGCAAGCCCCCAGCTATTATATGTGACTTTTATGCGAAGGGTTGGTGCATTAGAGGTAGTTCTTGTAAGTTCCTCCATGTGAAAGATAATCTGAACAGTTCTCAACCACATCCTGAGGGAGATGTTGCTAATTCTACAAGAGAAGTCCAGCTTGATGAAGGTCTAAGAGACATTACTGTGAGAACAAGGTCACCTCGTTTTCGTGACCCTCTGGCTTCTTCAAGTGGAAGTGATTTTGCATTTTCTTCACATCTCAGTTCTGAAAAGATCCCATTTTTGGAACACATAGGAAGACAACACCAGTTTCATGAAAAGCGCAAGTTTCCAACAGTTATTGGAGAGGAGTCAAATGTGGGTGTGTCCACTGATGCAAAGAAATTGCATTCATCCAAAGATGATCCAGGCTTTCTCTCGTCACTTAAGGATATAGGAAGGGATGATCAGACAAATTGGCCTGCTGTTAAAGATAATTCCATATTCATGAGCAGTTTGCATCCTGAGCCTGGATTTTTTTCAATTGGATCTATTTCATCATCAGGAAAGTACTTTATAGGGAAGAACTCTTCACATTCGAGCAGTATGGAGGAACCAGCTGGAATTTGGAGCCAGCGTATGCACCGTGACCATAGTTCCCCACTTGTGAACCTTGCTTTGAATTCAAGCTCAAGAAATCTTTCAACTACTGCCTTGTTTCCAACTAGCCGTATTTCATCTTGGACTGGATTTTCGTTGCCGTCTAGTTATTCCAATCTCGATTCAAGTCCTCATGATACTCTTAAGCTTTTTGATCAAAGTAGGGATTACCGTTCTTCTACTAGATCATCTCCCTTGCTGAAAAGCTCTTCCCCCTTCTCTAGTTCTGAATTGAAAAGTTTGCCGACCACCGTGTCATTGCGCTCTGCTGAAATTAAAACAAAACTTTCTTCAAATGATTGGGAGCCATCTGTGCCATTCCAGCCATCTTTTATTCTTCCTCGTGCATTTCTATCATCTTCGGGGAGGCAGTATGATCCTCTTCGTGACAGCATTGAGTTACCAAAGTTCTCAAACATCTCTGGTGAAGCTTCTTTCTATCCTGAAGGGGCAACCGTTGGGAATAAATTGCAACCGCAACATGGTGAATCTGCTAGTGGGACCACGCGGCCAGCTTGTGATGGTGATACAAACTCTATGTCTTCACATACTACGTATCATGAGAAGGTATTAGTTAATAGCTGCTATACACGTGACCATAATTCCCCTGTAACTGAAGCAGAGACAGCGGGGACTTCTGCTGTCTGCCAAAATGGAACCATGACTGGAGAAGAAAATCCCTTGGGCCCTCCTCATCCCAAATGTAGTACAAAACAAAACAAAGCCAGTAGTGCCACTGGTGATTCTAGACATCAAAGTGATGGTTCTAGACACCAAGAAGGCACAAAATTAGGTAGATTTAGAGAAAAAAATGAAGTGGATGGTGAACATTTGACAGACGGAGATGTACAGCAAGAATCAAAAGCTGTGAAGAATTTCCGAGCGGCTCTTGTAGATTTAGTGAAAGAATTGTTAAAACCAAAATGGCGCGAAGGTAGTCTCAGCAAGGATGCACATAACATGATAGTTAAGAGAGCAGTAGAGAAGATTATCAGTGCTTTTCAGCCCCATCAAATCCCATCTACCATAGAAACAGTTGTGCAATACCTGTCTGCATGCCGTCCAAAAATCTCAAAGCTTGTTGAGGGATATGTTGAAAAATATGGAAAATCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0010219 GO:0010220 GO:0048518 GO:0048583 GO:0048584 GO:0050789 GO:0065007 GO:0080134
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-CCCH

Protein Analysis

771

Amino Acids

84.93

Weight (kDa)

5.2

Isoelectric Point (pI)

62.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CCCH PF00642 195 - 215 1.3e-06 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1450
AccBSI CCGCTC 1 cut(s) 2081
AccII CGCG 2 cut(s) 1705, 2127
AccIII TCCGGA 1 cut(s) 28
AciI CCGC 9 cut(s) 143, 152, 158, 173, 369, 1673, 1705, 1826, 2081
AclWI GGATC 7 cut(s) 237, 246, 411, 826, 956, 1093, 1568
AcoI YGGCCR 4 cut(s) 36, 271, 348, 1706
AcsI RAATTY 4 cut(s) 41, 1161, 1219, 2071
AcuI CTGAAG 2 cut(s) 1662, 1833
AcvI CACGTG 1 cut(s) 1790
AfaI GTAC 4 cut(s) 288, 1109, 1906, 2046
AfiI CCNNNNNNNGG 5 cut(s) 399, 400, 841, 1067, 1679
AflII CTTAAG 2 cut(s) 983, 1340
AflIII ACRYGT 1 cut(s) 1787
AhdI GACNNNNNGTC 1 cut(s) 558
AhlI ACTAGT 1 cut(s) 554
AjnI CCWGG 3 cut(s) 439, 964, 1066
AleI CACNNNNGTG 1 cut(s) 533
Alw21I GWGCWC 1 cut(s) 514
Alw26I GTCTC 6 cut(s) 512, 543, 545, 726, 1814, 2141
AlwI GGATC 7 cut(s) 237, 246, 411, 826, 956, 1093, 1568
Aor13HI TCCGGA 1 cut(s) 28
AoxI GGCC 6 cut(s) 36, 271, 348, 1016, 1706, 1882
ApaI GGGCCC 1 cut(s) 1886
ApeKI GCWGC 3 cut(s) 469, 545, 1779
ApoI RAATTY 4 cut(s) 41, 1161, 1219, 2071
ArsI GACNNNNNNTTYG 4 cut(s) 1273, 1305, 1721, 1753
Asp700I GAANNNNTTC 2 cut(s) 1237, 2072
AspLEI GCGC 4 cut(s) 14, 882, 1461, 2127
AspS9I GGNCC 4 cut(s) 525, 1698, 1882, 1883
AsuHPI GGTGA 8 cut(s) 234, 425, 747, 1634, 1694, 1733, 1949, 2033
AvaII GGWCC 2 cut(s) 525, 1698
AxyI CCTNAGG 1 cut(s) 678
BaeGI GKGCMC 1 cut(s) 1886
BalI TGGCCA 1 cut(s) 350
BanII GRGCYC 1 cut(s) 1886
BauI CACGAG 1 cut(s) 1539
BbrPI CACGTG 1 cut(s) 1790
BbsI GAAGAC 4 cut(s) 99, 201, 862, 1731
Bbv12I GWGCWC 1 cut(s) 514
BbvI GCAGC 3 cut(s) 481, 532, 1766
BccI CCATC 8 cut(s) 373, 1513, 1531, 1712, 1952, 2012, 2214, 2224
BceAI ACGGC 4 cut(s) 286, 1251, 1282, 2241
BciT130I CCWGG 3 cut(s) 441, 966, 1068
BclI TGATCA 3 cut(s) 259, 1003, 1351
BcoDI GTCTC 6 cut(s) 512, 543, 545, 726, 1814, 2141
BcuI ACTAGT 1 cut(s) 554
BfaI CTAG 8 cut(s) 555, 1263, 1302, 1380, 1419, 1692, 1944, 1965
BfoI RGCGCY 1 cut(s) 15
BfrI CTTAAG 2 cut(s) 983, 1340
BisI GCNGC 5 cut(s) 470, 546, 1706, 1780, 2082
BlsI GCNGC 5 cut(s) 471, 547, 1707, 1781, 2083
BmcAI AGTACT 1 cut(s) 1109
Bme1390I CCNGG 3 cut(s) 441, 966, 1068
Bme18I GGWCC 2 cut(s) 525, 1698
BmeRI GACNNNNNGTC 1 cut(s) 558
BmgT120I GGNCC 4 cut(s) 525, 1698, 1882, 1883
BmiI GGNNCC 9 cut(s) 33, 52, 526, 1152, 1169, 1503, 1699, 1855, 1884
BmrFI CCNGG 3 cut(s) 441, 966, 1068
BmsI GCATC 5 cut(s) 328, 376, 922, 1066, 2137
BpiI GAAGAC 4 cut(s) 99, 201, 862, 1731
BpmI CTGGAG 1 cut(s) 1884
Bpu10I CCTNAGC 1 cut(s) 1062
BpuEI CTTGAG 2 cut(s) 536, 1213
BsaAI YACGTR 2 cut(s) 1752, 1790
BsaBI GATNNNNATC 1 cut(s) 228
BsaJI CCNNGG 2 cut(s) 440, 1878
BsaWI WCCGGW 1 cut(s) 28
BsaXI ACNNNNNCTCC 4 cut(s) 523, 553, 1159, 1189
Bsc4I CCNNNNNNNGG 5 cut(s) 399, 400, 841, 1067, 1679
Bse118I RCCGGY 1 cut(s) 34
Bse1I ACTGG 5 cut(s) 865, 1288, 1867, 1923, 1939
Bse21I CCTNAGG 1 cut(s) 678
Bse3DI GCAATG 1 cut(s) 1454
Bse8I GATNNNNATC 1 cut(s) 228
BseAI TCCGGA 1 cut(s) 28
BseBI CCWGG 3 cut(s) 441, 966, 1068
BseDI CCNNGG 2 cut(s) 440, 1878
BseGI GGATG 9 cut(s) 343, 451, 673, 950, 1006, 1057, 1891, 2023, 2152
BseJI GATNNNNATC 1 cut(s) 228
BseLI CCNNNNNNNGG 5 cut(s) 399, 400, 841, 1067, 1679
BseMI GCAATG 1 cut(s) 1454
BseMII CTCAG 5 cut(s) 540, 669, 832, 1053, 2152
BseNI ACTGG 5 cut(s) 865, 1288, 1867, 1923, 1939
BseRI GAGGAG 5 cut(s) 152, 161, 431, 920, 1878
BseSI GKGCMC 1 cut(s) 1886
BseX3I CGGCCG 1 cut(s) 36
BseXI GCAGC 3 cut(s) 481, 532, 1766
BseYI CCCAGC 1 cut(s) 574
Bsh1236I CGCG 2 cut(s) 1705, 2127
Bsh1285I CGRYCG 1 cut(s) 39
BshFI GGCC 6 cut(s) 38, 273, 350, 1018, 1708, 1884
BsiEI CGRYCG 1 cut(s) 39
BsiHKAI GWGCWC 1 cut(s) 514
BsiSI CCGG 3 cut(s) 29, 35, 48
BslFI GGGAC 3 cut(s) 538, 1711, 1843
BslI CCNNNNNNNGG 5 cut(s) 399, 400, 841, 1067, 1679
BsmAI GTCTC 6 cut(s) 512, 543, 545, 726, 1814, 2141
BsmFI GGGAC 3 cut(s) 538, 1711, 1843
BsmI GAATGC 1 cut(s) 946
BsnI GGCC 6 cut(s) 38, 273, 350, 1018, 1708, 1884
Bsp120I GGGCCC 1 cut(s) 1882
Bsp1286I GDGCHC 2 cut(s) 514, 1886
Bsp13I TCCGGA 1 cut(s) 28
Bsp1407I TGTACA 2 cut(s) 286, 2044
BspACI CCGC 9 cut(s) 143, 152, 158, 173, 369, 1673, 1705, 1826, 2081
BspANI GGCC 6 cut(s) 38, 273, 350, 1018, 1708, 1884
BspCNI CTCAG 5 cut(s) 541, 670, 831, 1054, 2151
BspEI TCCGGA 1 cut(s) 28
BspFNI CGCG 2 cut(s) 1705, 2127
BspHI TCATGA 4 cut(s) 871, 1044, 1330, 1756
BspLI GGNNCC 9 cut(s) 33, 52, 526, 1152, 1169, 1503, 1699, 1855, 1884
BspPI GGATC 7 cut(s) 237, 246, 411, 826, 956, 1093, 1568
BspQI GCTCTTC 1 cut(s) 1411
BspTI CTTAAG 2 cut(s) 983, 1340
BsrBI CCGCTC 1 cut(s) 2081
BsrDI GCAATG 1 cut(s) 1454
BsrFI RCCGGY 1 cut(s) 34
BsrGI TGTACA 2 cut(s) 286, 2044
BsrI ACTGG 5 cut(s) 865, 1288, 1867, 1923, 1939
BssAI RCCGGY 1 cut(s) 34
BssECI CCNNGG 2 cut(s) 440, 1878
BssSI CACGAG 1 cut(s) 1539
BssT1I CCWWGG 1 cut(s) 1878
Bst2BI CACGAG 1 cut(s) 1539
Bst2UI CCWGG 3 cut(s) 441, 966, 1068
Bst4CI ACNGT 9 cut(s) 535, 662, 742, 895, 1184, 1370, 1450, 1654, 2233
Bst6I CTCTTC 8 cut(s) 120, 129, 162, 177, 369, 1132, 1411, 1584
BstAFI CTTAAG 2 cut(s) 983, 1340
BstAUI TGTACA 2 cut(s) 286, 2044
BstBAI YACGTR 2 cut(s) 1752, 1790
BstC8I GCNNGC 6 cut(s) 352, 569, 1020, 1172, 1710, 2254
BstDEI CTNAG 6 cut(s) 549, 678, 728, 818, 1062, 2138
BstEII GGTNACC 1 cut(s) 753
BstF5I GGATG 9 cut(s) 343, 451, 673, 950, 1006, 1057, 1891, 2023, 2152
BstFNI CGCG 2 cut(s) 1705, 2127
BstH2I RGCGCY 1 cut(s) 15
BstHHI GCGC 4 cut(s) 14, 882, 1461, 2127
BstMAI GTCTC 6 cut(s) 512, 543, 545, 726, 1814, 2141
BstMCI CGRYCG 1 cut(s) 39
BstMWI GCNNNNNNNGC 7 cut(s) 149, 347, 1063, 1510, 1519, 1823, 1928
BstNI CCWGG 3 cut(s) 441, 966, 1068
BstNSI RCATGY 2 cut(s) 469, 2256
BstPI GGTNACC 1 cut(s) 753
BstSCI CCNGG 3 cut(s) 439, 964, 1066
BstSLI GKGCMC 1 cut(s) 1886
BstSNI TACGTA 1 cut(s) 1752
BstUI CGCG 2 cut(s) 1705, 2127
BstV1I GCAGC 3 cut(s) 481, 532, 1766
BstV2I GAAGAC 4 cut(s) 99, 201, 862, 1731
BstX2I RGATCY 3 cut(s) 229, 831, 1085
BstYI RGATCY 3 cut(s) 229, 831, 1085
BstZI CGGCCG 1 cut(s) 36
Bsu36I CCTNAGG 1 cut(s) 678
BsuRI GGCC 6 cut(s) 38, 273, 350, 1018, 1708, 1884
BtsCI GGATG 9 cut(s) 343, 451, 673, 950, 1006, 1057, 1891, 2023, 2152
BtsIMutI CAGTG 3 cut(s) 927, 1932, 2197
Cac8I GCNNGC 6 cut(s) 352, 569, 1020, 1172, 1710, 2254
CciI TCATGA 4 cut(s) 871, 1044, 1330, 1756
CfoI GCGC 4 cut(s) 14, 882, 1461, 2127
Cfr10I RCCGGY 1 cut(s) 34
Cfr13I GGNCC 4 cut(s) 525, 1698, 1882, 1883
Csp6I GTAC 4 cut(s) 287, 1108, 1905, 2045
CviQI GTAC 4 cut(s) 287, 1108, 1905, 2045
DdeI CTNAG 6 cut(s) 549, 678, 728, 818, 1062, 2138
DrdI GACNNNNNNGTC 1 cut(s) 1450
DriI GACNNNNNGTC 1 cut(s) 558
DseDI GACNNNNNNGTC 1 cut(s) 1450
EaeI YGGCCR 4 cut(s) 36, 271, 348, 1706
EagI CGGCCG 1 cut(s) 36
Eam1104I CTCTTC 8 cut(s) 120, 129, 162, 177, 369, 1132, 1411, 1584
Eam1105I GACNNNNNGTC 1 cut(s) 558
EarI CTCTTC 8 cut(s) 120, 129, 162, 177, 369, 1132, 1411, 1584
EciI GGCGGA 4 cut(s) 158, 167, 173, 188
EclXI CGGCCG 1 cut(s) 36
Eco105I TACGTA 1 cut(s) 1752
Eco130I CCWWGG 1 cut(s) 1878
Eco24I GRGCYC 1 cut(s) 1886
Eco47I GGWCC 2 cut(s) 525, 1698
Eco52I CGGCCG 1 cut(s) 36
Eco57I CTGAAG 2 cut(s) 1662, 1833
Eco72I CACGTG 1 cut(s) 1790
Eco81I CCTNAGG 1 cut(s) 678
Eco91I GGTNACC 1 cut(s) 753
EcoO109I RGGNCCY 1 cut(s) 1883
EcoO65I GGTNACC 1 cut(s) 753
EcoRI GAATTC 2 cut(s) 41, 1219
EcoRII CCWGG 3 cut(s) 439, 964, 1066
EcoT14I CCWWGG 1 cut(s) 1878
EcoT38I GRGCYC 1 cut(s) 1886
ErhI CCWWGG 1 cut(s) 1878
FalI AAGNNNNNCTT 2 cut(s) 699, 731
FaqI GGGAC 3 cut(s) 538, 1711, 1843
FauI CCCGC 2 cut(s) 362, 1819
FbaI TGATCA 3 cut(s) 259, 1003, 1351
Fnu4HI GCNGC 5 cut(s) 470, 546, 1706, 1780, 2082
FokI GGATG 9 cut(s) 350, 458, 660, 937, 1013, 1044, 1878, 2030, 2159
FriOI GRGCYC 1 cut(s) 1886
Fsp4HI GCNGC 5 cut(s) 470, 546, 1706, 1780, 2082
FspBI CTAG 8 cut(s) 555, 1263, 1302, 1380, 1419, 1692, 1944, 1965
GlaI GCGC 4 cut(s) 13, 881, 1460, 2126
GluI GCNGC 5 cut(s) 470, 546, 1706, 1780, 2082
GsaI CCCAGC 1 cut(s) 578
GsuI CTGGAG 1 cut(s) 1884
HaeII RGCGCY 1 cut(s) 15
HaeIII GGCC 6 cut(s) 38, 273, 350, 1018, 1708, 1884
HapII CCGG 3 cut(s) 29, 35, 48
HhaI GCGC 4 cut(s) 14, 882, 1461, 2127
Hin6I GCGC 4 cut(s) 12, 880, 1459, 2125
HinP1I GCGC 4 cut(s) 12, 880, 1459, 2125
HindIII AAGCTT 3 cut(s) 1343, 1626, 2273
HinfI GANTC 8 cut(s) 239, 436, 497, 908, 1319, 1685, 1940, 2054
HpaII CCGG 3 cut(s) 29, 35, 48
HphI GGTGA 8 cut(s) 234, 425, 747, 1634, 1694, 1733, 1949, 2033
Hpy166II GTNNAC 5 cut(s) 289, 463, 927, 1207, 2024
Hpy188I TCNGA 7 cut(s) 55, 238, 657, 826, 1008, 1426, 2078
Hpy8I GTNNAC 5 cut(s) 289, 463, 927, 1207, 2024
HpyCH4III ACNGT 9 cut(s) 535, 662, 742, 895, 1184, 1370, 1450, 1654, 2233
HpyCH4IV ACGT 2 cut(s) 1751, 1789
HpyF10VI GCNNNNNNNGC 7 cut(s) 149, 347, 1063, 1510, 1519, 1823, 1928
HpyF3I CTNAG 6 cut(s) 549, 678, 728, 818, 1062, 2138
HpySE526I ACGT 2 cut(s) 1751, 1789
HspAI GCGC 4 cut(s) 12, 880, 1459, 2125
Kpn2I TCCGGA 1 cut(s) 28
Ksp22I TGATCA 3 cut(s) 259, 1003, 1351
LguI GCTCTTC 1 cut(s) 1411
LmnI GCTCC 3 cut(s) 56, 1167, 1501
Lsp1109I GCAGC 3 cut(s) 481, 532, 1766
LweI GCATC 5 cut(s) 328, 376, 922, 1066, 2137
MaeI CTAG 8 cut(s) 555, 1263, 1302, 1380, 1419, 1692, 1944, 1965
MaeII ACGT 2 cut(s) 1751, 1789
MaeIII GTNAC 9 cut(s) 587, 753, 767, 978, 1184, 1583, 1596, 1790, 1807
MbiI CCGCTC 1 cut(s) 2081
MfeI CAATTG 1 cut(s) 1080
MflI RGATCY 3 cut(s) 229, 831, 1085
MhlI GDGCHC 2 cut(s) 514, 1886
MlsI TGGCCA 1 cut(s) 350
MluNI TGGCCA 1 cut(s) 350
MlyI GAGTC 1 cut(s) 917
MmeI TCCRAC 3 cut(s) 78, 914, 1283
Mox20I TGGCCA 1 cut(s) 350
MroI TCCGGA 1 cut(s) 28
MroXI GAANNNNTTC 2 cut(s) 1237, 2072
MscI TGGCCA 1 cut(s) 350
MseI TTAA 7 cut(s) 984, 1026, 1341, 1473, 1773, 2111, 2166
MslI CAYNNNNRTG 5 cut(s) 411, 533, 740, 1043, 1953
Msp20I TGGCCA 1 cut(s) 350
MspA1I CMGCKG 2 cut(s) 1157, 1826
MspCI CTTAAG 2 cut(s) 983, 1340
MspI CCGG 3 cut(s) 29, 35, 48
MspR9I CCNGG 3 cut(s) 441, 966, 1068
MunI CAATTG 1 cut(s) 1080
Mva1269I GAATGC 1 cut(s) 946
MvaI CCWGG 3 cut(s) 441, 966, 1068
MvnI CGCG 2 cut(s) 1705, 2127
MwoI GCNNNNNNNGC 7 cut(s) 149, 347, 1063, 1510, 1519, 1823, 1928
NlaIV GGNNCC 9 cut(s) 33, 52, 526, 1152, 1169, 1503, 1699, 1855, 1884
NmuCI GTSAC 7 cut(s) 587, 753, 767, 978, 1184, 1583, 1790
NspI RCATGY 2 cut(s) 469, 2256
OliI CACNNNNGTG 1 cut(s) 533
PaeI GCATGC 1 cut(s) 2256
PagI TCATGA 4 cut(s) 871, 1044, 1330, 1756
PciSI GCTCTTC 1 cut(s) 1411
PctI GAATGC 1 cut(s) 946
PdmI GAANNNNTTC 2 cut(s) 1237, 2072
PfeI GAWTC 7 cut(s) 239, 436, 497, 1319, 1685, 1940, 2054
PkrI GCNGC 5 cut(s) 471, 547, 1707, 1781, 2083
PleI GAGTC 1 cut(s) 916
PmaCI CACGTG 1 cut(s) 1790
PmlI CACGTG 1 cut(s) 1790
PpsI GAGTC 1 cut(s) 916
Ppu21I YACGTR 2 cut(s) 1752, 1790
Psp6I CCWGG 3 cut(s) 439, 964, 1066
PspCI CACGTG 1 cut(s) 1790
PspEI GGTNACC 1 cut(s) 753
PspFI CCCAGC 1 cut(s) 574
PspGI CCWGG 3 cut(s) 439, 964, 1066
PspN4I GGNNCC 9 cut(s) 33, 52, 526, 1152, 1169, 1503, 1699, 1855, 1884
PspOMI GGGCCC 1 cut(s) 1882
PspPI GGNCC 4 cut(s) 525, 1698, 1882, 1883
PsuI RGATCY 3 cut(s) 229, 831, 1085
PvuII CAGCTG 1 cut(s) 1157
RsaI GTAC 4 cut(s) 288, 1109, 1906, 2046
RsaNI GTAC 4 cut(s) 287, 1108, 1905, 2045
RseI CAYNNNNRTG 5 cut(s) 411, 533, 740, 1043, 1953
SapI GCTCTTC 1 cut(s) 1411
SaqAI TTAA 7 cut(s) 984, 1026, 1341, 1473, 1773, 2111, 2166
SatI GCNGC 5 cut(s) 470, 546, 1706, 1780, 2082
Sau96I GGNCC 4 cut(s) 525, 1698, 1882, 1883
ScaI AGTACT 1 cut(s) 1109
SchI GAGTC 1 cut(s) 917
ScrFI CCNGG 3 cut(s) 441, 966, 1068
SduI GDGCHC 2 cut(s) 514, 1886
SfaNI GCATC 5 cut(s) 328, 376, 922, 1066, 2137
SinI GGWCC 2 cut(s) 525, 1698
SmiMI CAYNNNNRTG 5 cut(s) 411, 533, 740, 1043, 1953
SmlI CTYRAG 4 cut(s) 515, 983, 1228, 1340
SmoI CTYRAG 4 cut(s) 515, 983, 1228, 1340
SnaBI TACGTA 1 cut(s) 1752
SpeI ACTAGT 1 cut(s) 554
SphI GCATGC 1 cut(s) 2256
SsiI CCGC 9 cut(s) 143, 152, 158, 173, 369, 1673, 1705, 1826, 2081
SspMI CTAG 8 cut(s) 555, 1263, 1302, 1380, 1419, 1692, 1944, 1965
StyD4I CCNGG 3 cut(s) 439, 964, 1066
StyI CCWWGG 1 cut(s) 1878
TaaI ACNGT 9 cut(s) 535, 662, 742, 895, 1184, 1370, 1450, 1654, 2233
TaiI ACGT 2 cut(s) 1754, 1792
TaqI TCGA 5 cut(s) 60, 250, 562, 1136, 1317
TatI WGTACW 4 cut(s) 286, 1107, 1904, 2044
TauI GCSGC 2 cut(s) 1708, 2084
TfiI GAWTC 7 cut(s) 239, 436, 497, 1319, 1685, 1940, 2054
Tru1I TTAA 7 cut(s) 984, 1026, 1341, 1473, 1773, 2111, 2166
Tru9I TTAA 7 cut(s) 984, 1026, 1341, 1473, 1773, 2111, 2166
TscAI CASTG 3 cut(s) 934, 1939, 2197
TseFI GTSAC 7 cut(s) 587, 753, 767, 978, 1184, 1583, 1790
TseI GCWGC 3 cut(s) 469, 545, 1779
Tsp45I GTSAC 7 cut(s) 587, 753, 767, 978, 1184, 1583, 1790
TspDTI ATGAA 9 cut(s) 467, 735, 860, 888, 939, 1033, 1083, 1263, 2025
TspGWI ACGGA 1 cut(s) 2052
TspRI CASTG 3 cut(s) 934, 1939, 2197
Vha464I CTTAAG 2 cut(s) 983, 1340
VpaK11BI GGWCC 2 cut(s) 525, 1698
XapI RAATTY 4 cut(s) 41, 1161, 1219, 2071
XbaI TCTAGA 2 cut(s) 1943, 1964
XceI RCATGY 2 cut(s) 469, 2256
XcmI CCANNNNNNNNNTGG 1 cut(s) 1161
XmnI GAANNNNTTC 2 cut(s) 1237, 2072
XspI CTAG 8 cut(s) 555, 1263, 1302, 1380, 1419, 1692, 1944, 1965
ZrmI AGTACT 1 cut(s) 1109
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.