Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0003690

Physical Location & Seq

Genomic Coordinates Forward (+)

59729560 .. 59731222

Gene Structure 1663 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0440500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGCTTCTGGGTCTCAAAGAAACCCCTCATGGAACTAACTCGACCTTTGAATGCTCTCCTAATGGTCCCTGTGTTCCTTGCCAATACTCTGAAAAGAACAATGAGAAGTATCGCTGCAGTGAGACTGGCTATCGCATCCCTTTGAAATGTGTGGAAATTAAGCAAGGGTTAAAGGATGCAAAGGCAAAGATAGGCTCTAAGAAGAGTAGATCAACTCTGGAAGTTTCCCACAACATTTCAGAATTGCATAATGCGGAAGAGCTCGGTACTCTCTTAAAGTGTAGAAGTTTACTGGATGATTCTTCTACAGAAGAGAATGGCAAGCAGGCTTACATTACTTACAGAAGCTGTATACCACCAGTTAATGAAGAGAAGTTGTCAGTGCTTGGTTTTGAGGTGATTGTCCTGTGTTTGCTAGTCATTAGTGGTTCTATTGTATACTTCAAAAAAAGGCAGACAGCTACAATGGCAGGATTTTCCCGAATTCAGAGCAACGCAAGGTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0010219 GO:0010220 GO:0048518 GO:0048583 GO:0048584 GO:0050789 GO:0065007 GO:0080134

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-CCCH

Protein Analysis

168

Amino Acids

18.68

Weight (kDa)

8.75

Isoelectric Point (pI)

43.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003690)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g08810 FvH4_3g08810 FvH4_3g08810 FvH4_3g08810 FvH4_3g08810 FvH4_3g08810 FvH4_3g08810
malus_domestica	MD05G1311700.v1.1 MD10G1291300.v1.1
prunus_persica	Prupe.4G051000_v2.0.a1 Prupe.4G051000_v2.0.a1 Prupe.4G051000_v2.0.a1 Prupe.4G051000_v2.0.a1 Prupe.4G051000_v2.0.a1 Prupe.4G051000_v2.0.a1 Prupe.4G051000_v2.0.a1 Prupe.4G051000_v2.0.a1 Prupe.4G051000_v2.0.a1 Prupe.4G051000_v2.0.a1 Prupe.4G051000_v2.0.a1 Prupe.4G051000_v2.0.a1
pyrus_communis	pycom05g28780 pycom10g24340
rosa_chinensis	RchiOBHm_Chr5g0008951
rosa_laevigata	RLG00000031619
rosa_multiflora	Rmu_sc0004677.1_g000020
rosa_roxburghii	Rroxscaffold_1G00067070 Rroxscaffold_1G00067700
rosa_rugosa	Rorug04G0440500 Rorug04G0440500
rosa_samantha	Rh5AG069200 Rh5BG066000 Rh5CG077000 Rh5DG065000
rosa_wichuraiana	Rw5G006460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	352, 438
AciI	CCGC	1 cut(s)	254
AcsI	RAATTY	1 cut(s)	483
AfaI	GTAC	1 cut(s)	268
AgsI	TTSAA	3 cut(s)	50, 145, 445
AluBI	AGCT	3 cut(s)	262, 348, 461
AluI	AGCT	3 cut(s)	262, 348, 461
Alw21I	GWGCWC	1 cut(s)	264
Alw26I	GTCTC	2 cut(s)	17, 116
AlwNI	CAGNNNCTG	1 cut(s)	348
ApeKI	GCWGC	1 cut(s)	114
ApoI	RAATTY	1 cut(s)	483
AspS9I	GGNCC	1 cut(s)	65
AsuHPI	GGTGA	1 cut(s)	409
AvaII	GGWCC	1 cut(s)	65
BanII	GRGCYC	1 cut(s)	264
Bbv12I	GWGCWC	1 cut(s)	264
BbvI	GCAGC	1 cut(s)	101
BcoDI	GTCTC	2 cut(s)	17, 116
BfaI	CTAG	1 cut(s)	416
BfmI	CTRYAG	2 cut(s)	115, 306
BisI	GCNGC	1 cut(s)	115
BlsI	GCNGC	1 cut(s)	116
Bme18I	GGWCC	1 cut(s)	65
BmgT120I	GGNCC	1 cut(s)	65
BmiI	GGNNCC	1 cut(s)	67
BmsI	GCATC	2 cut(s)	144, 166
BsaI	GGTCTC	1 cut(s)	17
Bse1I	ACTGG	3 cut(s)	130, 297, 359
BseGI	GGATG	3 cut(s)	135, 181, 301
BseNI	ACTGG	3 cut(s)	130, 297, 359
BseXI	GCAGC	1 cut(s)	101
BsiHKAI	GWGCWC	1 cut(s)	264
BslFI	GGGAC	1 cut(s)	51
BsmAI	GTCTC	2 cut(s)	17, 116
BsmFI	GGGAC	1 cut(s)	51
BsmI	GAATGC	1 cut(s)	56
Bso31I	GGTCTC	1 cut(s)	17
Bsp1286I	GDGCHC	1 cut(s)	264
Bsp143I	GATC	1 cut(s)	209
BspACI	CCGC	1 cut(s)	254
BspLI	GGNNCC	1 cut(s)	67
BspMAI	CTGCAG	1 cut(s)	119
BspQI	GCTCTTC	1 cut(s)	252
BspTNI	GGTCTC	1 cut(s)	17
BsrI	ACTGG	3 cut(s)	130, 297, 359
BssMI	GATC	1 cut(s)	209
BssNAI	GTATAC	2 cut(s)	353, 439
Bst1107I	GTATAC	2 cut(s)	353, 439
Bst6I	CTCTTC	4 cut(s)	197, 252, 306, 363
BstC8I	GCNNGC	2 cut(s)	323, 327
BstDEI	CTNAG	1 cut(s)	198
BstF5I	GGATG	3 cut(s)	135, 181, 301
BstKTI	GATC	1 cut(s)	212
BstMAI	GTCTC	2 cut(s)	17, 116
BstMBI	GATC	1 cut(s)	209
BstMWI	GCNNNNNNNGC	1 cut(s)	467
BstSFI	CTRYAG	2 cut(s)	115, 306
BstV1I	GCAGC	1 cut(s)	101
BstZ17I	GTATAC	2 cut(s)	353, 439
BtsCI	GGATG	3 cut(s)	135, 181, 301
BtsI	GCAGTG	1 cut(s)	124
BtsIMutI	CAGTG	2 cut(s)	124, 387
Cac8I	GCNNGC	2 cut(s)	323, 327
CaiI	CAGNNNCTG	1 cut(s)	348
Cfr13I	GGNCC	1 cut(s)	65
Csp6I	GTAC	1 cut(s)	267
CviAII	CATG	1 cut(s)	29
CviJI	RGCY	6 cut(s)	129, 195, 262, 329, 348, 461
CviKI_1	RGCY	6 cut(s)	129, 195, 262, 329, 348, 461
CviQI	GTAC	1 cut(s)	267
DdeI	CTNAG	1 cut(s)	198
DpnI	GATC	1 cut(s)	211
DpnII	GATC	1 cut(s)	209
Eam1104I	CTCTTC	4 cut(s)	197, 252, 306, 363
EarI	CTCTTC	4 cut(s)	197, 252, 306, 363
Ecl136II	GAGCTC	1 cut(s)	262
Eco24I	GRGCYC	1 cut(s)	264
Eco31I	GGTCTC	1 cut(s)	17
Eco47I	GGWCC	1 cut(s)	65
Eco53kI	GAGCTC	1 cut(s)	262
EcoICRI	GAGCTC	1 cut(s)	262
EcoRI	GAATTC	1 cut(s)	483
EcoT38I	GRGCYC	1 cut(s)	264
FaeI	CATG	1 cut(s)	32
FaiI	YATR	4 cut(s)	30, 249, 353, 439
FaqI	GGGAC	1 cut(s)	51
FatI	CATG	1 cut(s)	28
FblI	GTMKAC	2 cut(s)	352, 438
Fnu4HI	GCNGC	1 cut(s)	115
FokI	GGATG	3 cut(s)	122, 188, 308
FriOI	GRGCYC	1 cut(s)	264
Fsp4HI	GCNGC	1 cut(s)	115
FspBI	CTAG	1 cut(s)	416
GluI	GCNGC	1 cut(s)	115
Hin1II	CATG	1 cut(s)	32
HinfI	GANTC	1 cut(s)	299
HphI	GGTGA	1 cut(s)	409
Hpy166II	GTNNAC	3 cut(s)	290, 353, 439
Hpy188I	TCNGA	3 cut(s)	91, 241, 489
Hpy188III	TCNNGA	2 cut(s)	218, 480
Hpy8I	GTNNAC	3 cut(s)	290, 353, 439
HpyCH4V	TGCA	3 cut(s)	117, 179, 247
HpyF10VI	GCNNNNNNNGC	1 cut(s)	467
HpyF3I	CTNAG	1 cut(s)	198
Hsp92II	CATG	1 cut(s)	32
Kzo9I	GATC	1 cut(s)	209
LguI	GCTCTTC	1 cut(s)	252
LpnPI	CCDG	8 cut(s)	82, 111, 203, 278, 311, 372, 419, 456
Lsp1109I	GCAGC	1 cut(s)	101
LweI	GCATC	2 cut(s)	144, 166
MaeI	CTAG	1 cut(s)	416
MalI	GATC	1 cut(s)	211
MboI	GATC	1 cut(s)	209
MboII	GAAGA	5 cut(s)	214, 269, 294, 323, 380
MhlI	GDGCHC	1 cut(s)	264
MluCI	AATT	3 cut(s)	156, 242, 483
MnlI	CCTC	2 cut(s)	36, 388
MseI	TTAA	5 cut(s)	159, 170, 275, 363, 505
Mva1269I	GAATGC	1 cut(s)	56
MwoI	GCNNNNNNNGC	1 cut(s)	467
NdeII	GATC	1 cut(s)	209
NlaIII	CATG	1 cut(s)	32
NlaIV	GGNNCC	1 cut(s)	67
PciSI	GCTCTTC	1 cut(s)	252
PctI	GAATGC	1 cut(s)	56
PfeI	GAWTC	1 cut(s)	299
PkrI	GCNGC	1 cut(s)	116
Psp124BI	GAGCTC	1 cut(s)	264
PspN4I	GGNNCC	1 cut(s)	67
PspPI	GGNCC	1 cut(s)	65
PstI	CTGCAG	1 cut(s)	119
PstNI	CAGNNNCTG	1 cut(s)	348
RsaI	GTAC	1 cut(s)	268
RsaNI	GTAC	1 cut(s)	267
SacI	GAGCTC	1 cut(s)	264
SapI	GCTCTTC	1 cut(s)	252
SaqAI	TTAA	5 cut(s)	159, 170, 275, 363, 505
SatI	GCNGC	1 cut(s)	115
Sau3AI	GATC	1 cut(s)	209
Sau96I	GGNCC	1 cut(s)	65
SduI	GDGCHC	1 cut(s)	264
SetI	ASST	6 cut(s)	47, 264, 350, 399, 463, 503
SfaNI	GCATC	2 cut(s)	144, 166
SfcI	CTRYAG	2 cut(s)	115, 306
SinI	GGWCC	1 cut(s)	65
Sse9I	AATT	3 cut(s)	156, 242, 483
SsiI	CCGC	1 cut(s)	254
SspMI	CTAG	1 cut(s)	416
SstI	GAGCTC	1 cut(s)	264
TaqI	TCGA	1 cut(s)	41
TasI	AATT	3 cut(s)	156, 242, 483
TfiI	GAWTC	1 cut(s)	299
Tru1I	TTAA	5 cut(s)	159, 170, 275, 363, 505
Tru9I	TTAA	5 cut(s)	159, 170, 275, 363, 505
TscAI	CASTG	2 cut(s)	124, 387
TseI	GCWGC	1 cut(s)	114
TspDTI	ATGAA	1 cut(s)	381
TspRI	CASTG	2 cut(s)	124, 387
VpaK11BI	GGWCC	1 cut(s)	65
XapI	RAATTY	1 cut(s)	483
XmiI	GTMKAC	2 cut(s)	352, 438
XspI	CTAG	1 cut(s)	416

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.