Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0003690

Physical Location & Seq

Genomic Coordinates Forward (+)

29375976 .. 29378910

Gene Structure 2935 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g28780.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2067 bp

ATGATCGATCAGAACGGCCAGAGAACCTCTGTAGACCTACGCGATGATGGCAACAGTCATCTGTGTAATAGTGAGATTATGGATGCTAAAGCCGCCAGCTCATGTAGAGTGGGCGGGGAAGAGAAGGCTGATGCCATCCCGATGAGGGATAATTTAGGTAAGGAGGTTAGAGGTGTTGTGAATCCAGAGGATGGGATGAAACAAGTGGACATGCGGCAGAGGAATGATAGAAAGCAAATGGATTCAAGGTCGGGTGCTTTTGAGATATGGACCACAATTACGTCTCCTGCGGTTGAGACTAGTGATCGAAACAAGCACCCAGCTATTATATGTGATTTCCATGCGAAGGGTTGGTGCATTAGAGGTAGTTCTTGTAAATTCGTCCATGTAAAAGATAATCCCATTAGTTCCCAACCACAACCTGAGGGAGATATTGCTAATTCTACTAGAGAAGTCCAGCTTGATGAAGGCCTAAGAGACATTACTGAGAGATCAAGGTCACCTGGTTTTCGTGAACCGCTGGCCTCTTCAAGTGGAAGTGATTTTGCATTTTCTTCACATCTCACATCTGAAAAGATCCGATTTTTGGAACACATAGGAAGGCAGCACCAGTTTCATGAAAAGCGCAAGTTTCCAACAGTTATAGAGGAGGAATCAAATGTGGGCGAGTCCACTGTTGCAAAGAAATTGCATTCATCCAAAGATGATCCAGGCTTTCTCTCTTCGCTTAAGGATATAGAAAGAGATGATCAGACACGAAATTGGCTTTCTGATAAAGATAAATCTATATTTATGAGCGGTTTGCATCCTGAACCTGGATTTTTTTCAAATGGATCTATTTCATCATCAGGCAAGTACTTTATAAGGAAGACCTCTTCACATACGAGCGGTATGGGGGAACCAGATGGAATTTGGAGCCAGCATGTGCACCGTGTTCATAGTTCCCCACTCGTGAACCTTGCTTTAAATTCAAGCTCAAGAAATCTTTCAACTACTGGCTTGTTTCCAACTAGCCGTATTTCATCTTGGACTGGATTTTCGTTGCCTTCTAGTTCTTCCAATCTCGATGCAAGTCCTCATGATACTCTTAAGCTTTTTGATCGAAGTAGGGATTACCGGTCTTGTACTAGATTACCTCCCTTGCTGAAAAGCTCTTCTCCCTTCTCTAGTTCTGAGTTGAAAAATTTTCCTGTGACCAGCGTGTCATTGTGCTCAGCTGAAATTAAAACAAAAATTTCTTCAAATGACTGGGAGCCATCTGTGCCTTTCTGGCCATCTTTTATTCTTCCTCATGCATTTCTATCATCTTCAGGAAGGCAGTATGACCCTCTTCGGGACAGCATTGAGTTACCAAAGTTAGCAAACATCTCCGGTGAAACTTCTTTCTATCCTGAAGGGGCAACCGCTGTGAATAAATTGCATCAGCAAATACATGTTGAATCTGCTAGTGGGACCACACGGACAGCTTGTGAGGGTGATACAAACTCTATGTCTTCACATAATACATATCATGAGAAGGTATTAGATAATAGCTGCTATATACGTGACCATAATTCACCTGGCACTGAAGCAGAGACATTGGGGACTTCTGCTGTATGCCAAAAAGGAACCATGACTGGAGAAGAAAATCCCTTGGGCCCGTCTCATCTCAAAGGTAGTACAAAACAAAACAAAGCCAGTACGGCGTATGGTGATTCTGGACATGAAAGTGACTGTTCTAGACACCAAGAAGACATAAAAGTAGATAGATTTAGAGATAAGAATGAAGTGGATGGTGAACATTTGACAGACGGGAATGTACAGCAAGAATCAAAAGCTGTGAGGAATTTCCGTGCAGCTCTTGTAGATTTAGTAAAAGATATGTTAAAACCAAAATGGCGTGATGGTAGTCTCAGCAAGGATGCACATAACATGATAGTCAAGAGAGCAGTAGAGAAGATTATCAGTGCTTTTCAGCCCCATCAAATCCCATCAACCATAGAAACAGTTATGCAATACTTGTCTGTATGCCGTCCAAAAATCTCAAAGCTTGTTGAGGGATATGTTGTAAAATATGGAAAATCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0010219 GO:0010220 GO:0048518 GO:0048583 GO:0048584 GO:0050789 GO:0065007 GO:0080134

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-CCCH

Protein Analysis

689

Amino Acids

76.25

Weight (kDa)

6.73

Isoelectric Point (pI)

47.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003690)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g08810 FvH4_3g08810 FvH4_3g08810 FvH4_3g08810 FvH4_3g08810 FvH4_3g08810 FvH4_3g08810
malus_domestica	MD05G1311700.v1.1 MD10G1291300.v1.1
prunus_persica	Prupe.4G051000_v2.0.a1 Prupe.4G051000_v2.0.a1 Prupe.4G051000_v2.0.a1 Prupe.4G051000_v2.0.a1 Prupe.4G051000_v2.0.a1 Prupe.4G051000_v2.0.a1 Prupe.4G051000_v2.0.a1 Prupe.4G051000_v2.0.a1 Prupe.4G051000_v2.0.a1 Prupe.4G051000_v2.0.a1 Prupe.4G051000_v2.0.a1 Prupe.4G051000_v2.0.a1
pyrus_communis	pycom05g28780 pycom10g24340
rosa_chinensis	RchiOBHm_Chr5g0008951
rosa_laevigata	RLG00000031619
rosa_multiflora	Rmu_sc0004677.1_g000020
rosa_roxburghii	Rroxscaffold_1G00067070 Rroxscaffold_1G00067700
rosa_rugosa	Rorug04G0440500 Rorug04G0440500
rosa_samantha	Rh5AG069200 Rh5BG066000 Rh5CG077000 Rh5DG065000
rosa_wichuraiana	Rw5G006460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	863
AasI	GACNNNNNNGTC	1 cut(s)	1201
AccB7I	CCANNNNNTGG	1 cut(s)	191
AccBSI	CCGCTC	2 cut(s)	798, 888
AccI	GTMKAC	1 cut(s)	33
AccII	CGCG	1 cut(s)	42
AciI	CCGC	8 cut(s)	93, 114, 214, 290, 518, 798, 888, 1404
AclWI	GGATC	3 cut(s)	571, 701, 841
AcoI	YGGCCR	2 cut(s)	16, 1271
AcsI	RAATTY	6 cut(s)	377, 909, 967, 1183, 1233, 1825
AcuI	CTGAAG	3 cut(s)	1293, 1413, 1587
AfaI	GTAC	5 cut(s)	857, 1126, 1660, 1681, 1800
AfiI	CCNNNNNNNGG	6 cut(s)	145, 191, 346, 586, 815, 1333
AflII	CTTAAG	2 cut(s)	728, 1088
AflIII	ACRYGT	1 cut(s)	1432
AgeI	ACCGGT	1 cut(s)	1116
AgsI	TTSAA	8 cut(s)	246, 531, 828, 972, 990, 1180, 1242, 1439
AhlI	ACTAGT	1 cut(s)	299
AjnI	CCWGG	4 cut(s)	502, 709, 814, 1558
Alw21I	GWGCWC	2 cut(s)	930, 1214
Alw26I	GTCTC	6 cut(s)	288, 290, 471, 1568, 1647, 1895
Alw44I	GTGCAC	1 cut(s)	926
AlwI	GGATC	3 cut(s)	571, 701, 841
AoxI	GGCC	5 cut(s)	16, 469, 522, 1271, 1636
ApaI	GGGCCC	1 cut(s)	1640
ApaLI	GTGCAC	1 cut(s)	926
ApeKI	GCWGC	3 cut(s)	604, 1533, 1835
ApoI	RAATTY	6 cut(s)	377, 909, 967, 1183, 1233, 1825
ArsI	GACNNNNNNTTYG	4 cut(s)	1021, 1053, 1475, 1507
AsiGI	ACCGGT	1 cut(s)	1116
Asp700I	GAANNNNTTC	1 cut(s)	985
AspLEI	GCGC	1 cut(s)	627
AspS9I	GGNCC	4 cut(s)	270, 1452, 1636, 1637
AsuHPI	GGTGA	6 cut(s)	492, 1385, 1487, 1548, 1703, 1787
AvaII	GGWCC	2 cut(s)	270, 1452
AxyI	CCTNAGG	1 cut(s)	423
BaeGI	GKGCMC	2 cut(s)	930, 1640
BalI	TGGCCA	1 cut(s)	1273
BanII	GRGCYC	1 cut(s)	1640
BauI	CACGAG	1 cut(s)	950
BbsI	GAAGAC	3 cut(s)	875, 1485, 1737
Bbv12I	GWGCWC	2 cut(s)	930, 1214
BbvI	GCAGC	3 cut(s)	616, 1520, 1847
BceAI	ACGGC	4 cut(s)	31, 999, 1698, 1995
BciT130I	CCWGG	4 cut(s)	504, 711, 816, 1560
BclI	TGATCA	1 cut(s)	748
BcoDI	GTCTC	6 cut(s)	288, 290, 471, 1568, 1647, 1895
BcuI	ACTAGT	1 cut(s)	299
BfaI	CTAG	8 cut(s)	300, 447, 1011, 1050, 1128, 1167, 1446, 1719
BfmI	CTRYAG	1 cut(s)	30
BfrI	CTTAAG	2 cut(s)	728, 1088
BglI	GCCNNNNNGGC	2 cut(s)	1270, 1682
BisI	GCNGC	5 cut(s)	93, 215, 605, 1534, 1836
BlpI	GCTNAGC	1 cut(s)	1213
BlsI	GCNGC	5 cut(s)	94, 216, 606, 1535, 1837
BmcAI	AGTACT	1 cut(s)	857
Bme1390I	CCNGG	4 cut(s)	504, 711, 816, 1560
Bme18I	GGWCC	2 cut(s)	270, 1452
BmgT120I	GGNCC	4 cut(s)	270, 1452, 1636, 1637
BmiI	GGNNCC	6 cut(s)	900, 917, 1254, 1453, 1609, 1638
BmrFI	CCNGG	4 cut(s)	504, 711, 816, 1560
BmrI	ACTGGG	1 cut(s)	1258
BmsI	GCATC	6 cut(s)	73, 121, 814, 1057, 1429, 1891
BmuI	ACTGGG	1 cut(s)	1258
BpiI	GAAGAC	3 cut(s)	875, 1485, 1737
BpmI	CTGGAG	1 cut(s)	1638
Bpu1102I	GCTNAGC	1 cut(s)	1213
BpuEI	CTTGAG	1 cut(s)	961
Bsa29I	ATCGAT	1 cut(s)	6
BsaAI	YACGTR	1 cut(s)	1544
BsaJI	CCNNGG	1 cut(s)	1632
BsaWI	WCCGGW	2 cut(s)	1116, 1370
Bsc4I	CCNNNNNNNGG	6 cut(s)	145, 191, 346, 586, 815, 1333
Bse118I	RCCGGY	1 cut(s)	1116
Bse1I	ACTGG	6 cut(s)	610, 1000, 1036, 1253, 1621, 1677
Bse21I	CCTNAGG	1 cut(s)	423
BseBI	CCWGG	4 cut(s)	504, 711, 816, 1560
BseCI	ATCGAT	1 cut(s)	6
BseDI	CCNNGG	1 cut(s)	1632
BseGI	GGATG	8 cut(s)	88, 135, 196, 201, 695, 805, 1777, 1906
BseLI	CCNNNNNNNGG	6 cut(s)	145, 191, 346, 586, 815, 1333
BseMII	CTCAG	5 cut(s)	414, 477, 1164, 1227, 1906
BseNI	ACTGG	6 cut(s)	610, 1000, 1036, 1253, 1621, 1677
BseRI	GAGGAG	1 cut(s)	662
BseSI	GKGCMC	2 cut(s)	930, 1640
BseXI	GCAGC	3 cut(s)	616, 1520, 1847
BseYI	CCCAGC	1 cut(s)	319
BsgI	GTGCAG	1 cut(s)	1854
Bsh1236I	CGCG	1 cut(s)	42
BshFI	GGCC	5 cut(s)	18, 471, 524, 1273, 1638
BshTI	ACCGGT	1 cut(s)	1116
BshVI	ATCGAT	1 cut(s)	6
BsiHKAI	GWGCWC	2 cut(s)	930, 1214
BsiSI	CCGG	2 cut(s)	1117, 1371
BslFI	GGGAC	3 cut(s)	1349, 1465, 1597
BslI	CCNNNNNNNGG	6 cut(s)	145, 191, 346, 586, 815, 1333
BsmAI	GTCTC	6 cut(s)	288, 290, 471, 1568, 1647, 1895
BsmBI	CGTCTC	2 cut(s)	288, 1647
BsmFI	GGGAC	3 cut(s)	1349, 1465, 1597
BsmI	GAATGC	1 cut(s)	691
BsnI	GGCC	5 cut(s)	18, 471, 524, 1273, 1638
Bsp120I	GGGCCC	1 cut(s)	1636
Bsp1286I	GDGCHC	3 cut(s)	930, 1214, 1640
Bsp1407I	TGTACA	1 cut(s)	1798
Bsp143I	GATC	9 cut(s)	3, 7, 304, 491, 576, 706, 748, 833, 1099
Bsp1720I	GCTNAGC	1 cut(s)	1213
BspACI	CCGC	8 cut(s)	93, 114, 214, 290, 518, 798, 888, 1404
BspANI	GGCC	5 cut(s)	18, 471, 524, 1273, 1638
BspCNI	CTCAG	5 cut(s)	415, 478, 1165, 1226, 1905
BspDI	ATCGAT	1 cut(s)	6
BspFNI	CGCG	1 cut(s)	42
BspHI	TCATGA	3 cut(s)	616, 1078, 1510
BspLI	GGNNCC	6 cut(s)	900, 917, 1254, 1453, 1609, 1638
BspPI	GGATC	3 cut(s)	571, 701, 841
BspQI	GCTCTTC	1 cut(s)	1159
BspTI	CTTAAG	2 cut(s)	728, 1088
BsrBI	CCGCTC	2 cut(s)	798, 888
BsrFI	RCCGGY	1 cut(s)	1116
BsrGI	TGTACA	1 cut(s)	1798
BsrI	ACTGG	6 cut(s)	610, 1000, 1036, 1253, 1621, 1677
BssAI	RCCGGY	1 cut(s)	1116
BssECI	CCNNGG	1 cut(s)	1632
BssMI	GATC	9 cut(s)	3, 7, 304, 491, 576, 706, 748, 833, 1099
BssSI	CACGAG	1 cut(s)	950
BssT1I	CCWWGG	1 cut(s)	1632
Bst2BI	CACGAG	1 cut(s)	950
Bst2UI	CCWGG	4 cut(s)	504, 711, 816, 1560
Bst4CI	ACNGT	6 cut(s)	56, 640, 676, 932, 1715, 1987
Bst6I	CTCTTC	6 cut(s)	114, 532, 727, 880, 1159, 1335
BstAFI	CTTAAG	2 cut(s)	728, 1088
BstAUI	TGTACA	1 cut(s)	1798
BstBAI	YACGTR	1 cut(s)	1544
BstC8I	GCNNGC	3 cut(s)	97, 522, 920
BstDEI	CTNAG	6 cut(s)	423, 473, 486, 1173, 1213, 1892
BstEII	GGTNACC	1 cut(s)	498
BstF5I	GGATG	8 cut(s)	88, 135, 196, 201, 695, 805, 1777, 1906
BstFNI	CGCG	1 cut(s)	42
BstHHI	GCGC	1 cut(s)	627
BstKTI	GATC	9 cut(s)	6, 10, 307, 494, 579, 709, 751, 836, 1102
BstMAI	GTCTC	6 cut(s)	288, 290, 471, 1568, 1647, 1895
BstMBI	GATC	9 cut(s)	3, 7, 304, 491, 576, 706, 748, 833, 1099
BstMWI	GCNNNNNNNGC	5 cut(s)	48, 92, 1261, 1270, 1682
BstNI	CCWGG	4 cut(s)	504, 711, 816, 1560
BstNSI	RCATGY	3 cut(s)	214, 926, 1436
BstPI	GGTNACC	1 cut(s)	498
BstSCI	CCNGG	4 cut(s)	502, 709, 814, 1558
BstSFI	CTRYAG	1 cut(s)	30
BstSLI	GKGCMC	2 cut(s)	930, 1640
BstUI	CGCG	1 cut(s)	42
BstV1I	GCAGC	3 cut(s)	616, 1520, 1847
BstV2I	GAAGAC	3 cut(s)	875, 1485, 1737
BstX2I	RGATCY	2 cut(s)	576, 833
BstYI	RGATCY	2 cut(s)	576, 833
Bsu15I	ATCGAT	1 cut(s)	6
Bsu36I	CCTNAGG	1 cut(s)	423
BsuRI	GGCC	5 cut(s)	18, 471, 524, 1273, 1638
BsuTUI	ATCGAT	1 cut(s)	6
BtgZI	GCGATG	1 cut(s)	57
BtsCI	GGATG	8 cut(s)	88, 135, 196, 201, 695, 805, 1777, 1906
BtsIMutI	CAGTG	3 cut(s)	672, 1563, 1951
Cac8I	GCNNGC	3 cut(s)	97, 522, 920
CciI	TCATGA	3 cut(s)	616, 1078, 1510
CfoI	GCGC	1 cut(s)	627
Cfr10I	RCCGGY	1 cut(s)	1116
Cfr13I	GGNCC	4 cut(s)	270, 1452, 1636, 1637
ClaI	ATCGAT	1 cut(s)	6
CsiI	ACCWGGT	1 cut(s)	502
Csp6I	GTAC	5 cut(s)	856, 1125, 1659, 1680, 1799
CspAI	ACCGGT	1 cut(s)	1116
CviQI	GTAC	5 cut(s)	856, 1125, 1659, 1680, 1799
DdeI	CTNAG	6 cut(s)	423, 473, 486, 1173, 1213, 1892
DpnI	GATC	9 cut(s)	5, 9, 306, 493, 578, 708, 750, 835, 1101
DpnII	GATC	9 cut(s)	3, 7, 304, 491, 576, 706, 748, 833, 1099
DraI	TTTAAA	1 cut(s)	966
DrdI	GACNNNNNNGTC	1 cut(s)	1201
DseDI	GACNNNNNNGTC	1 cut(s)	1201
EaeI	YGGCCR	2 cut(s)	16, 1271
Eam1104I	CTCTTC	6 cut(s)	114, 532, 727, 880, 1159, 1335
EarI	CTCTTC	6 cut(s)	114, 532, 727, 880, 1159, 1335
Eco130I	CCWWGG	1 cut(s)	1632
Eco147I	AGGCCT	1 cut(s)	471
Eco24I	GRGCYC	1 cut(s)	1640
Eco47I	GGWCC	2 cut(s)	270, 1452
Eco57I	CTGAAG	3 cut(s)	1293, 1413, 1587
Eco81I	CCTNAGG	1 cut(s)	423
Eco91I	GGTNACC	1 cut(s)	498
EcoO65I	GGTNACC	1 cut(s)	498
EcoRII	CCWGG	4 cut(s)	502, 709, 814, 1558
EcoT14I	CCWWGG	1 cut(s)	1632
EcoT22I	ATGCAT	1 cut(s)	1297
EcoT38I	GRGCYC	1 cut(s)	1640
ErhI	CCWWGG	1 cut(s)	1632
Esp3I	CGTCTC	2 cut(s)	288, 1647
FalI	AAGNNNNNCTT	2 cut(s)	444, 476
FaqI	GGGAC	3 cut(s)	1349, 1465, 1597
FauI	CCCGC	1 cut(s)	107
FbaI	TGATCA	1 cut(s)	748
FblI	GTMKAC	1 cut(s)	33
Fnu4HI	GCNGC	5 cut(s)	93, 215, 605, 1534, 1836
FokI	GGATG	8 cut(s)	95, 122, 203, 208, 682, 792, 1784, 1913
FriOI	GRGCYC	1 cut(s)	1640
Fsp4HI	GCNGC	5 cut(s)	93, 215, 605, 1534, 1836
FspBI	CTAG	8 cut(s)	300, 447, 1011, 1050, 1128, 1167, 1446, 1719
GlaI	GCGC	1 cut(s)	626
GluI	GCNGC	5 cut(s)	93, 215, 605, 1534, 1836
GsaI	CCCAGC	1 cut(s)	323
GsuI	CTGGAG	1 cut(s)	1638
HaeIII	GGCC	5 cut(s)	18, 471, 524, 1273, 1638
HapII	CCGG	2 cut(s)	1117, 1371
HhaI	GCGC	1 cut(s)	627
Hin6I	GCGC	1 cut(s)	625
HinP1I	GCGC	1 cut(s)	625
HindIII	AAGCTT	2 cut(s)	1091, 2027
HinfI	GANTC	7 cut(s)	181, 242, 653, 668, 1439, 1694, 1808
HpaII	CCGG	2 cut(s)	1117, 1371
HphI	GGTGA	6 cut(s)	492, 1385, 1487, 1548, 1703, 1787
Hpy166II	GTNNAC	7 cut(s)	34, 208, 515, 672, 928, 955, 1778
Hpy188I	TCNGA	6 cut(s)	12, 571, 581, 753, 772, 1174
Hpy8I	GTNNAC	7 cut(s)	34, 208, 515, 672, 928, 955, 1778
HpyAV	CCTTC	9 cut(s)	118, 340, 461, 594, 1056, 1171, 1308, 1388, 1510
HpyCH4III	ACNGT	6 cut(s)	56, 640, 676, 932, 1715, 1987
HpyCH4IV	ACGT	2 cut(s)	281, 1543
HpyF10VI	GCNNNNNNNGC	5 cut(s)	48, 92, 1261, 1270, 1682
HpyF3I	CTNAG	6 cut(s)	423, 473, 486, 1173, 1213, 1892
HpySE526I	ACGT	2 cut(s)	281, 1543
HspAI	GCGC	1 cut(s)	625
Ksp22I	TGATCA	1 cut(s)	748
Kzo9I	GATC	9 cut(s)	3, 7, 304, 491, 576, 706, 748, 833, 1099
LguI	GCTCTTC	1 cut(s)	1159
LmnI	GCTCC	2 cut(s)	915, 1252
Lsp1109I	GCAGC	3 cut(s)	616, 1520, 1847
LweI	GCATC	6 cut(s)	73, 121, 814, 1057, 1429, 1891
MabI	ACCWGGT	1 cut(s)	502
MaeI	CTAG	8 cut(s)	300, 447, 1011, 1050, 1128, 1167, 1446, 1719
MaeII	ACGT	2 cut(s)	281, 1543
MaeIII	GTNAC	5 cut(s)	498, 1192, 1347, 1544, 1709
MalI	GATC	9 cut(s)	5, 9, 306, 493, 578, 708, 750, 835, 1101
MbiI	CCGCTC	2 cut(s)	798, 888
MboI	GATC	9 cut(s)	3, 7, 304, 491, 576, 706, 748, 833, 1099
MflI	RGATCY	2 cut(s)	576, 833
MhlI	GDGCHC	3 cut(s)	930, 1214, 1640
MlsI	TGGCCA	1 cut(s)	1273
MluNI	TGGCCA	1 cut(s)	1273
MlyI	GAGTC	1 cut(s)	677
MmeI	TCCRAC	2 cut(s)	659, 1031
Mox20I	TGGCCA	1 cut(s)	1273
Mph1103I	ATGCAT	1 cut(s)	1297
MroXI	GAANNNNTTC	1 cut(s)	985
MscI	TGGCCA	1 cut(s)	1273
MseI	TTAA	5 cut(s)	729, 965, 1089, 1224, 1865
MslI	CAYNNNNRTG	2 cut(s)	140, 1707
Msp20I	TGGCCA	1 cut(s)	1273
MspA1I	CMGCKG	3 cut(s)	520, 1217, 1406
MspCI	CTTAAG	2 cut(s)	728, 1088
MspI	CCGG	2 cut(s)	1117, 1371
MspR9I	CCNGG	4 cut(s)	504, 711, 816, 1560
Mva1269I	GAATGC	1 cut(s)	691
MvaI	CCWGG	4 cut(s)	504, 711, 816, 1560
MvnI	CGCG	1 cut(s)	42
MwoI	GCNNNNNNNGC	5 cut(s)	48, 92, 1261, 1270, 1682
NdeII	GATC	9 cut(s)	3, 7, 304, 491, 576, 706, 748, 833, 1099
NlaIV	GGNNCC	6 cut(s)	900, 917, 1254, 1453, 1609, 1638
NmuCI	GTSAC	4 cut(s)	498, 1192, 1544, 1709
NsiI	ATGCAT	1 cut(s)	1297
NspI	RCATGY	3 cut(s)	214, 926, 1436
PagI	TCATGA	3 cut(s)	616, 1078, 1510
PceI	AGGCCT	1 cut(s)	471
PciI	ACATGT	1 cut(s)	1432
PciSI	GCTCTTC	1 cut(s)	1159
PctI	GAATGC	1 cut(s)	691
PdmI	GAANNNNTTC	1 cut(s)	985
PfeI	GAWTC	6 cut(s)	181, 242, 653, 1439, 1694, 1808
PflMI	CCANNNNNTGG	1 cut(s)	191
PinAI	ACCGGT	1 cut(s)	1116
PkrI	GCNGC	5 cut(s)	94, 216, 606, 1535, 1837
PleI	GAGTC	1 cut(s)	676
PpsI	GAGTC	1 cut(s)	676
Ppu21I	YACGTR	1 cut(s)	1544
PscI	ACATGT	1 cut(s)	1432
PsiI	TTATAA	1 cut(s)	863
Psp6I	CCWGG	4 cut(s)	502, 709, 814, 1558
PspEI	GGTNACC	1 cut(s)	498
PspFI	CCCAGC	1 cut(s)	319
PspGI	CCWGG	4 cut(s)	502, 709, 814, 1558
PspN4I	GGNNCC	6 cut(s)	900, 917, 1254, 1453, 1609, 1638
PspOMI	GGGCCC	1 cut(s)	1636
PspPI	GGNCC	4 cut(s)	270, 1452, 1636, 1637
PsuI	RGATCY	2 cut(s)	576, 833
PvuII	CAGCTG	1 cut(s)	1217
RsaI	GTAC	5 cut(s)	857, 1126, 1660, 1681, 1800
RsaNI	GTAC	5 cut(s)	856, 1125, 1659, 1680, 1799
RseI	CAYNNNNRTG	2 cut(s)	140, 1707
SapI	GCTCTTC	1 cut(s)	1159
SaqAI	TTAA	5 cut(s)	729, 965, 1089, 1224, 1865
SatI	GCNGC	5 cut(s)	93, 215, 605, 1534, 1836
Sau3AI	GATC	9 cut(s)	3, 7, 304, 491, 576, 706, 748, 833, 1099
Sau96I	GGNCC	4 cut(s)	270, 1452, 1636, 1637
ScaI	AGTACT	1 cut(s)	857
SchI	GAGTC	1 cut(s)	677
ScrFI	CCNGG	4 cut(s)	504, 711, 816, 1560
SduI	GDGCHC	3 cut(s)	930, 1214, 1640
SexAI	ACCWGGT	1 cut(s)	502
SfaNI	GCATC	6 cut(s)	73, 121, 814, 1057, 1429, 1891
SfcI	CTRYAG	1 cut(s)	30
SinI	GGWCC	2 cut(s)	270, 1452
SmiMI	CAYNNNNRTG	2 cut(s)	140, 1707
SmlI	CTYRAG	3 cut(s)	728, 976, 1088
SmoI	CTYRAG	3 cut(s)	728, 976, 1088
SpeI	ACTAGT	1 cut(s)	299
SseBI	AGGCCT	1 cut(s)	471
SsiI	CCGC	8 cut(s)	93, 114, 214, 290, 518, 798, 888, 1404
SspMI	CTAG	8 cut(s)	300, 447, 1011, 1050, 1128, 1167, 1446, 1719
StuI	AGGCCT	1 cut(s)	471
StyD4I	CCNGG	4 cut(s)	502, 709, 814, 1558
StyI	CCWWGG	1 cut(s)	1632
TaaI	ACNGT	6 cut(s)	56, 640, 676, 932, 1715, 1987
TaiI	ACGT	2 cut(s)	284, 1546
TaqI	TCGA	4 cut(s)	6, 307, 1065, 1102
TatI	WGTACW	4 cut(s)	855, 1124, 1658, 1798
TauI	GCSGC	2 cut(s)	95, 217
TfiI	GAWTC	6 cut(s)	181, 242, 653, 1439, 1694, 1808
Tru1I	TTAA	5 cut(s)	729, 965, 1089, 1224, 1865
Tru9I	TTAA	5 cut(s)	729, 965, 1089, 1224, 1865
TscAI	CASTG	3 cut(s)	679, 1570, 1951
TseFI	GTSAC	4 cut(s)	498, 1192, 1544, 1709
TseI	GCWGC	3 cut(s)	604, 1533, 1835
Tsp45I	GTSAC	4 cut(s)	498, 1192, 1544, 1709
TspGWI	ACGGA	2 cut(s)	1474, 1820
TspRI	CASTG	3 cut(s)	679, 1570, 1951
Van91I	CCANNNNNTGG	1 cut(s)	191
Vha464I	CTTAAG	2 cut(s)	728, 1088
VneI	GTGCAC	1 cut(s)	926
VpaK11BI	GGWCC	2 cut(s)	270, 1452
XapI	RAATTY	6 cut(s)	377, 909, 967, 1183, 1233, 1825
XbaI	TCTAGA	1 cut(s)	1718
XceI	RCATGY	3 cut(s)	214, 926, 1436
XcmI	CCANNNNNNNNNTGG	2 cut(s)	909, 1556
XmiI	GTMKAC	1 cut(s)	33
XmnI	GAANNNNTTC	1 cut(s)	985
XspI	CTAG	8 cut(s)	300, 447, 1011, 1050, 1128, 1167, 1446, 1719
ZrmI	AGTACT	1 cut(s)	857
Zsp2I	ATGCAT	1 cut(s)	1297

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.