MD10G1319200.v1.1

Abnormal spindle-like microcephaly-associated protein homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0006240
Physical Location & Seq
Forward (+)
40143691 .. 40144707
1017 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1319200.v1.1.491

Sequence Viewer

Length: 405 bp
ATGTCAAGATGCTGGAAGGCTTATCAGCAGTACAAAATTGCAGCTGGTTCAGCCACCGTCATTCAATCTTATATACGTGGATGTTTTGCCCGGAAAGGCGCTGAAAATCATAGGCTTCTCATTGTTGCAATCCAAAGATACTTCCGTGGTTGGTTGATCAGAAGTCAATTCTCGTGTCAAAGACAGGCTGCAATAAAGATCCAAAGCTCTATTCGAGGCTTGATATGGCGTCAATCATTTCATCGTCATAGACAAGCTGCAGTGGAAATTCAACGGATAGTCAGGGGGCAGATTAGTCGAAATAGGCTCTTAGGTGCTGCTTCACTATGCCCAATCGTCCGCAATGGTTGTCCTTTGAATAGCACAGGAGCCCTTTATATGGGTGCTGAACTAAATAAAGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Arm CH IQ

Protein Analysis

135

Amino Acids

15.26

Weight (kDa)

11.4

Isoelectric Point (pI)

42.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 340
AclWI GGATC 1 cut(s) 193
AcsI RAATTY 1 cut(s) 267
AcyI GRCGYC 1 cut(s) 229
AfaI GTAC 1 cut(s) 32
AfiI CCNNNNNNNGG 1 cut(s) 379
AgsI TTSAA 3 cut(s) 65, 272, 358
AjuI GAANNNNNNNTTGG 2 cut(s) 195, 227
AluBI AGCT 3 cut(s) 44, 207, 257
AluI AGCT 3 cut(s) 44, 207, 257
AlwI GGATC 1 cut(s) 193
ApeKI GCWGC 4 cut(s) 41, 188, 257, 317
ApoI RAATTY 1 cut(s) 267
AspLEI GCGC 1 cut(s) 101
AsuC2I CCSGG 1 cut(s) 91
BaeI ACNNNNGTAYC 2 cut(s) 130, 163
BanII GRGCYC 1 cut(s) 373
BauI CACGAG 1 cut(s) 172
BbvI GCAGC 4 cut(s) 53, 175, 244, 304
BcgI CGANNNNNNTGC 2 cut(s) 278, 312
BclI TGATCA 1 cut(s) 156
BcnI CCSGG 1 cut(s) 91
BfmI CTRYAG 1 cut(s) 258
BfoI RGCGCY 1 cut(s) 102
BisI GCNGC 4 cut(s) 42, 189, 258, 318
BlsI GCNGC 4 cut(s) 43, 190, 259, 319
Bme1390I CCNGG 1 cut(s) 91
BmiI GGNNCC 1 cut(s) 370
BmrFI CCNGG 1 cut(s) 91
BpuMI CCSGG 1 cut(s) 91
BsaAI YACGTR 1 cut(s) 77
BsaHI GRCGYC 1 cut(s) 229
BsaJI CCNNGG 1 cut(s) 145
Bsc4I CCNNNNNNNGG 1 cut(s) 379
Bse3DI GCAATG 1 cut(s) 349
BseDI CCNNGG 1 cut(s) 145
BseGI GGATG 1 cut(s) 86
BseLI CCNNNNNNNGG 1 cut(s) 379
BseMI GCAATG 1 cut(s) 349
BseXI GCAGC 4 cut(s) 53, 175, 244, 304
BsiSI CCGG 1 cut(s) 91
BslI CCNNNNNNNGG 1 cut(s) 379
Bsp1286I GDGCHC 1 cut(s) 373
Bsp143I GATC 2 cut(s) 156, 198
BspACI CCGC 1 cut(s) 340
BspLI GGNNCC 1 cut(s) 370
BspMAI CTGCAG 1 cut(s) 262
BspPI GGATC 1 cut(s) 193
BsrDI GCAATG 1 cut(s) 349
BssECI CCNNGG 1 cut(s) 145
BssMI GATC 2 cut(s) 156, 198
BssNI GRCGYC 1 cut(s) 229
BssSI CACGAG 1 cut(s) 172
Bst2BI CACGAG 1 cut(s) 172
Bst4CI ACNGT 1 cut(s) 58
BstACI GRCGYC 1 cut(s) 229
BstBAI YACGTR 1 cut(s) 77
BstDEI CTNAG 1 cut(s) 310
BstDSI CCRYGG 1 cut(s) 145
BstF5I GGATG 1 cut(s) 86
BstH2I RGCGCY 1 cut(s) 102
BstHHI GCGC 1 cut(s) 101
BstKTI GATC 2 cut(s) 159, 201
BstMBI GATC 2 cut(s) 156, 198
BstMWI GCNNNNNNNGC 1 cut(s) 50
BstSCI CCNGG 1 cut(s) 89
BstSFI CTRYAG 1 cut(s) 258
BstV1I GCAGC 4 cut(s) 53, 175, 244, 304
BstX2I RGATCY 1 cut(s) 198
BstYI RGATCY 1 cut(s) 198
BtgI CCRYGG 1 cut(s) 145
BtsCI GGATG 1 cut(s) 86
BtsI GCAGTG 1 cut(s) 267
BtsIMutI CAGTG 1 cut(s) 267
CfoI GCGC 1 cut(s) 101
CseI GACGC 1 cut(s) 218
Csp6I GTAC 1 cut(s) 31
CviQI GTAC 1 cut(s) 31
DdeI CTNAG 1 cut(s) 310
DpnI GATC 2 cut(s) 158, 200
DpnII GATC 2 cut(s) 156, 198
Eco24I GRGCYC 1 cut(s) 373
EcoT38I GRGCYC 1 cut(s) 373
FaiI YATR 8 cut(s) 72, 74, 111, 226, 249, 328, 378, 380
FbaI TGATCA 1 cut(s) 156
Fnu4HI GCNGC 4 cut(s) 42, 189, 258, 318
FokI GGATG 1 cut(s) 93
FriOI GRGCYC 1 cut(s) 373
Fsp4HI GCNGC 4 cut(s) 42, 189, 258, 318
GlaI GCGC 1 cut(s) 100
GluI GCNGC 4 cut(s) 42, 189, 258, 318
HaeII RGCGCY 1 cut(s) 102
HapII CCGG 1 cut(s) 91
HgaI GACGC 1 cut(s) 218
HhaI GCGC 1 cut(s) 101
Hin1I GRCGYC 1 cut(s) 229
Hin6I GCGC 1 cut(s) 99
HinP1I GCGC 1 cut(s) 99
HpaII CCGG 1 cut(s) 91
Hpy188I TCNGA 1 cut(s) 161
Hpy188III TCNNGA 1 cut(s) 6
HpyAV CCTTC 1 cut(s) 10
HpyCH4III ACNGT 1 cut(s) 58
HpyCH4IV ACGT 1 cut(s) 76
HpyCH4V TGCA 4 cut(s) 41, 128, 191, 260
HpyF10VI GCNNNNNNNGC 1 cut(s) 50
HpyF3I CTNAG 1 cut(s) 310
HpySE526I ACGT 1 cut(s) 76
Hsp92I GRCGYC 1 cut(s) 229
HspAI GCGC 1 cut(s) 99
Ksp22I TGATCA 1 cut(s) 156
Kzo9I GATC 2 cut(s) 156, 198
LmnI GCTCC 1 cut(s) 368
LpnPI CCDG 5 cut(s) 30, 104, 170, 268, 351
Lsp1109I GCAGC 4 cut(s) 53, 175, 244, 304
MaeII ACGT 1 cut(s) 76
MalI GATC 2 cut(s) 158, 200
MboI GATC 2 cut(s) 156, 198
MflI RGATCY 1 cut(s) 198
MhlI GDGCHC 1 cut(s) 373
MluCI AATT 3 cut(s) 36, 167, 267
MnlI CCTC 1 cut(s) 209
MspA1I CMGCKG 1 cut(s) 44
MspI CCGG 1 cut(s) 91
MspR9I CCNGG 1 cut(s) 91
MwoI GCNNNNNNNGC 1 cut(s) 50
NciI CCSGG 1 cut(s) 91
NdeII GATC 2 cut(s) 156, 198
NlaIV GGNNCC 1 cut(s) 370
PkrI GCNGC 4 cut(s) 43, 190, 259, 319
Ppu21I YACGTR 1 cut(s) 77
PspN4I GGNNCC 1 cut(s) 370
PstI CTGCAG 1 cut(s) 262
PsuI RGATCY 1 cut(s) 198
PvuII CAGCTG 1 cut(s) 44
RsaI GTAC 1 cut(s) 32
RsaNI GTAC 1 cut(s) 31
SatI GCNGC 4 cut(s) 42, 189, 258, 318
Sau3AI GATC 2 cut(s) 156, 198
ScrFI CCNGG 1 cut(s) 91
SduI GDGCHC 1 cut(s) 373
SetI ASST 5 cut(s) 46, 79, 209, 259, 316
SfcI CTRYAG 1 cut(s) 258
Sse9I AATT 3 cut(s) 36, 167, 267
SsiI CCGC 1 cut(s) 340
StyD4I CCNGG 1 cut(s) 89
TaaI ACNGT 1 cut(s) 58
TaiI ACGT 1 cut(s) 79
TaqI TCGA 2 cut(s) 214, 298
TasI AATT 3 cut(s) 36, 167, 267
TatI WGTACW 1 cut(s) 30
TscAI CASTG 1 cut(s) 267
TseI GCWGC 4 cut(s) 41, 188, 257, 317
TspDTI ATGAA 1 cut(s) 230
TspGWI ACGGA 2 cut(s) 134, 289
TspRI CASTG 1 cut(s) 267
XapI RAATTY 1 cut(s) 267
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.