Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0012259

Physical Location & Seq

Genomic Coordinates Reverse (-)

41497550 .. 41499371

Gene Structure 1822 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1339200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGGAGGGCAAAGAAAATCAGGAAAAAGGTCCTCAAGAGGAGGAATGCACGAATGGCGGCGGATCACTGTCGAAGAGCGCACAGAAGAAGCTGTTGAAGCAGCAGAAATGGGAAGCGAAGAAGGCAGAGAAGAAAGCTCAGGAAAAAGAGCAGAAGAAGAGAGAGGTAGAGAGGAAGCGGAGGGAATGGGAGGAGAAGTTGGCGAGCTTGGGCGAGGAGGAGAGGGAGAAGCTGATAGAGGAGAGGAAGAGTCTGAGGAAGGAGAGGATGGAGCACAAGTCAGAGGAGCGAGCGGTGCAGACACAGAGACTGAGTAAAGCCAAAGAGTGCGGACAGAAGATCGTGATTGACCTCGAATTCTCTCATCTCATGACCCCCGCCGAGATCAACAGCCTCGTTCAACAGACTATGTATTGTTACGCGGTGAACAAAAGGTGCAGCGAGCCGGGTCATCTGTGGTTGACAGGATGCAAGGGAGAGATGGGGAATGCATTAAAGAAGCTGCCGGGGTTTGATAATTGGATCATAGAGAAGGAAGATCGATCCTACATTGAAGCTCTGGAAAACGAGAAGCAAAATCTGGTGTATCTGACTGCTGATTCGGAAAATGTGGTTAATGAGCTGGATGCAAGCAAGATATACATTGTCGGGGGATTGGTGGATCGGAATCGGTGGAAAGGGATCACCATGAAGAAAGCAGAGGAGCAGGGTATCCAAACGGCCAAACTCCCCATAGGCAACTACTTGAACATGTCCTCTTCCCAGGTGCTAACTGTGAACCAAGTGATAGAGATACTGCTAAAGTATTTGGAAACAAAGGATTGGAAGGAGGCTTTCTTCCAAGTGATTCCTCAAAGAAAAAGGGGATGCCCGGCTGATTCAGATCAGCAATCTAAACAAGTGAATGGTGAAGAAAATGAAGAGAAAGATGATCAATTTGGAAGCAAAAAGCAGTGTGCTCAAGTCAAGGGCCTTCCGATTCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

tRNA_m1G_MT

Protein Analysis

329

Amino Acids

37.78

Weight (kDa)

8.0

Isoelectric Point (pI)

53.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012259)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47680
fragaria_vesca	FvH4_1g24140 FvH4_1g24140
malus_domestica	MD10G1339200.v1.1
prunus_persica	Prupe.4G003700_v2.0.a1 Prupe.4G003700_v2.0.a1 Prupe.4G003700_v2.0.a1 Prupe.4G003700_v2.0.a1 Prupe.4G003700_v2.0.a1
pyrus_communis	pycom10g28880
rosa_chinensis	RchiOBHm_Chr2g0120371
rosa_laevigata	RLG00000018553
rosa_roxburghii	Rroxscaffold_2G00123460
rosa_rugosa	Rorug02G0229100
rosa_samantha	Rh2AG285100 Rh2BG296200 Rh2CG273900 Rh2DG310100
rosa_wichuraiana	Rw2G022880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	293
AccII	CGCG	1 cut(s)	422
AciI	CCGC	7 cut(s)	57, 60, 178, 293, 330, 378, 422
AclWI	GGATC	5 cut(s)	70, 530, 537, 669, 689
AcoI	YGGCCR	1 cut(s)	720
AcsI	RAATTY	1 cut(s)	356
AflIII	ACRYGT	1 cut(s)	750
AgsI	TTSAA	4 cut(s)	97, 401, 554, 748
AjnI	CCWGG	1 cut(s)	762
AluBI	AGCT	7 cut(s)	91, 137, 207, 232, 502, 557, 622
AluI	AGCT	7 cut(s)	91, 137, 207, 232, 502, 557, 622
Alw21I	GWGCWC	2 cut(s)	276, 961
Alw26I	GTCTC	1 cut(s)	301
AlwI	GGATC	5 cut(s)	70, 530, 537, 669, 689
AlwNI	CAGNNNCTG	1 cut(s)	310
AoxI	GGCC	2 cut(s)	720, 970
ApeKI	GCWGC	3 cut(s)	100, 438, 502
ApoI	RAATTY	1 cut(s)	356
ArsI	GACNNNNNNTTYG	2 cut(s)	583, 615
AspLEI	GCGC	1 cut(s)	80
AspS9I	GGNCC	2 cut(s)	29, 970
AsuC2I	CCSGG	3 cut(s)	447, 507, 872
AsuHPI	GGTGA	3 cut(s)	436, 676, 920
AvaII	GGWCC	1 cut(s)	29
Bbv12I	GWGCWC	2 cut(s)	276, 961
BbvI	GCAGC	3 cut(s)	112, 450, 489
BccI	CCATC	2 cut(s)	262, 475
BceAI	ACGGC	1 cut(s)	735
BciT130I	CCWGG	1 cut(s)	764
BciVI	GTATCC	1 cut(s)	722
BclI	TGATCA	1 cut(s)	931
BcnI	CCSGG	3 cut(s)	447, 507, 872
BcoDI	GTCTC	1 cut(s)	301
BfuI	GTATCC	1 cut(s)	722
BisI	GCNGC	4 cut(s)	58, 101, 439, 503
BlsI	GCNGC	4 cut(s)	59, 102, 440, 504
Bme1390I	CCNGG	4 cut(s)	447, 507, 764, 872
Bme18I	GGWCC	1 cut(s)	29
BmgT120I	GGNCC	2 cut(s)	29, 970
BmrFI	CCNGG	4 cut(s)	447, 507, 764, 872
BmsI	GCATC	3 cut(s)	458, 616, 857
Bpu10I	CCTNAGC	1 cut(s)	138
BpuEI	CTTGAG	2 cut(s)	18, 945
BpuMI	CCSGG	3 cut(s)	447, 507, 872
Bsa29I	ATCGAT	1 cut(s)	541
BsaBI	GATNNNNATC	2 cut(s)	666, 882
BsaJI	CCNNGG	2 cut(s)	506, 762
BsaXI	ACNNNNNCTCC	4 cut(s)	182, 212, 263, 293
Bse8I	GATNNNNATC	2 cut(s)	666, 882
BseBI	CCWGG	1 cut(s)	764
BseCI	ATCGAT	1 cut(s)	541
BseDI	CCNNGG	2 cut(s)	506, 762
BseGI	GGATG	4 cut(s)	273, 473, 631, 872
BseJI	GATNNNNATC	2 cut(s)	666, 882
BseMII	CTCAG	3 cut(s)	152, 245, 302
BseRI	GAGGAG	7 cut(s)	53, 206, 230, 233, 254, 299, 716
BseXI	GCAGC	3 cut(s)	112, 450, 489
BsgI	GTGCAG	2 cut(s)	317, 457
Bsh1236I	CGCG	1 cut(s)	422
BshFI	GGCC	2 cut(s)	722, 972
BshVI	ATCGAT	1 cut(s)	541
BsiHKAI	GWGCWC	2 cut(s)	276, 961
BsiSI	CCGG	3 cut(s)	446, 506, 872
BsmAI	GTCTC	1 cut(s)	301
BsmI	GAATGC	2 cut(s)	50, 493
BsnI	GGCC	2 cut(s)	722, 972
Bsp1286I	GDGCHC	2 cut(s)	276, 961
BspACI	CCGC	7 cut(s)	57, 60, 178, 293, 330, 378, 422
BspANI	GGCC	2 cut(s)	722, 972
BspCNI	CTCAG	3 cut(s)	151, 246, 303
BspDI	ATCGAT	1 cut(s)	541
BspFNI	CGCG	1 cut(s)	422
BspHI	TCATGA	1 cut(s)	369
BspPI	GGATC	5 cut(s)	70, 530, 537, 669, 689
BspQI	GCTCTTC	1 cut(s)	68
BsrBI	CCGCTC	1 cut(s)	293
BssECI	CCNNGG	2 cut(s)	506, 762
Bst2UI	CCWGG	1 cut(s)	764
Bst4CI	ACNGT	2 cut(s)	69, 775
Bst6I	CTCTTC	5 cut(s)	68, 152, 242, 763, 915
BstC8I	GCNNGC	4 cut(s)	205, 291, 443, 631
BstDEI	CTNAG	3 cut(s)	138, 254, 311
BstF5I	GGATG	4 cut(s)	273, 473, 631, 872
BstFNI	CGCG	1 cut(s)	422
BstHHI	GCGC	1 cut(s)	80
BstMAI	GTCTC	1 cut(s)	301
BstMWI	GCNNNNNNNGC	4 cut(s)	54, 97, 122, 295
BstNI	CCWGG	1 cut(s)	764
BstNSI	RCATGY	1 cut(s)	754
BstSCI	CCNGG	4 cut(s)	445, 505, 762, 870
BstUI	CGCG	1 cut(s)	422
BstV1I	GCAGC	3 cut(s)	112, 450, 489
Bsu15I	ATCGAT	1 cut(s)	541
BsuI	GTATCC	1 cut(s)	722
BsuRI	GGCC	2 cut(s)	722, 972
BsuTUI	ATCGAT	1 cut(s)	541
BtsCI	GGATG	4 cut(s)	273, 473, 631, 872
BtsI	GCAGTG	1 cut(s)	959
BtsIMutI	CAGTG	2 cut(s)	65, 959
Cac8I	GCNNGC	4 cut(s)	205, 291, 443, 631
CaiI	CAGNNNCTG	1 cut(s)	310
CciI	TCATGA	1 cut(s)	369
CfoI	GCGC	1 cut(s)	80
Cfr13I	GGNCC	2 cut(s)	29, 970
ClaI	ATCGAT	1 cut(s)	541
CviAII	CATG	4 cut(s)	370, 688, 751, 984
DdeI	CTNAG	3 cut(s)	138, 254, 311
EaeI	YGGCCR	1 cut(s)	720
Eam1104I	CTCTTC	5 cut(s)	68, 152, 242, 763, 915
EarI	CTCTTC	5 cut(s)	68, 152, 242, 763, 915
EciI	GGCGGA	1 cut(s)	75
Eco47I	GGWCC	1 cut(s)	29
EcoO109I	RGGNCCY	2 cut(s)	29, 970
EcoRI	GAATTC	1 cut(s)	356
EcoRII	CCWGG	1 cut(s)	762
EcoT22I	ATGCAT	1 cut(s)	493
FaeI	CATG	4 cut(s)	373, 691, 754, 987
FaiI	YATR	8 cut(s)	371, 410, 527, 640, 689, 734, 752, 985
FatI	CATG	4 cut(s)	369, 687, 750, 983
FauI	CCCGC	1 cut(s)	385
FbaI	TGATCA	1 cut(s)	931
Fnu4HI	GCNGC	4 cut(s)	58, 101, 439, 503
FokI	GGATG	4 cut(s)	280, 480, 638, 879
Fsp4HI	GCNGC	4 cut(s)	58, 101, 439, 503
GlaI	GCGC	1 cut(s)	79
GluI	GCNGC	4 cut(s)	58, 101, 439, 503
HaeIII	GGCC	2 cut(s)	722, 972
HapII	CCGG	3 cut(s)	446, 506, 872
HhaI	GCGC	1 cut(s)	80
Hin1II	CATG	4 cut(s)	373, 691, 754, 987
Hin6I	GCGC	1 cut(s)	78
HinP1I	GCGC	1 cut(s)	78
HincII	GTYRAC	1 cut(s)	462
HindII	GTYRAC	1 cut(s)	462
HinfI	GANTC	6 cut(s)	250, 599, 667, 847, 878, 979
HpaII	CCGG	3 cut(s)	446, 506, 872
HphI	GGTGA	3 cut(s)	436, 676, 920
Hpy166II	GTNNAC	3 cut(s)	427, 462, 778
Hpy188I	TCNGA	7 cut(s)	255, 283, 591, 604, 666, 883, 978
Hpy188III	TCNNGA	6 cut(s)	20, 35, 140, 343, 370, 560
Hpy8I	GTNNAC	3 cut(s)	427, 462, 778
HpyAV	CCTTC	5 cut(s)	115, 253, 526, 820, 983
HpyCH4III	ACNGT	2 cut(s)	69, 775
HpyCH4V	TGCA	6 cut(s)	48, 298, 438, 471, 491, 629
HpyF10VI	GCNNNNNNNGC	4 cut(s)	54, 97, 122, 295
HpyF3I	CTNAG	3 cut(s)	138, 254, 311
Hsp92II	CATG	4 cut(s)	373, 691, 754, 987
HspAI	GCGC	1 cut(s)	78
Ksp22I	TGATCA	1 cut(s)	931
LguI	GCTCTTC	1 cut(s)	68
LmnI	GCTCC	3 cut(s)	271, 286, 703
Lsp1109I	GCAGC	3 cut(s)	112, 450, 489
LweI	GCATC	3 cut(s)	458, 616, 857
MaeIII	GTNAC	1 cut(s)	416
MbiI	CCGCTC	1 cut(s)	293
MhlI	GDGCHC	2 cut(s)	276, 961
MluCI	AATT	3 cut(s)	356, 517, 935
MlyI	GAGTC	1 cut(s)	259
Mph1103I	ATGCAT	1 cut(s)	493
MseI	TTAA	2 cut(s)	494, 615
MspI	CCGG	3 cut(s)	446, 506, 872
MspR9I	CCNGG	4 cut(s)	447, 507, 764, 872
Mva1269I	GAATGC	2 cut(s)	50, 493
MvaI	CCWGG	1 cut(s)	764
MvnI	CGCG	1 cut(s)	422
MwoI	GCNNNNNNNGC	4 cut(s)	54, 97, 122, 295
NciI	CCSGG	3 cut(s)	447, 507, 872
NlaIII	CATG	4 cut(s)	373, 691, 754, 987
NmeAIII	GCCGAG	1 cut(s)	406
NsiI	ATGCAT	1 cut(s)	493
NspI	RCATGY	1 cut(s)	754
PagI	TCATGA	1 cut(s)	369
PciI	ACATGT	1 cut(s)	750
PciSI	GCTCTTC	1 cut(s)	68
PctI	GAATGC	2 cut(s)	50, 493
PfeI	GAWTC	5 cut(s)	599, 667, 847, 878, 979
PkrI	GCNGC	4 cut(s)	59, 102, 440, 504
PleI	GAGTC	1 cut(s)	258
PpsI	GAGTC	1 cut(s)	258
PpuMI	RGGWCCY	1 cut(s)	29
PscI	ACATGT	1 cut(s)	750
Psp5II	RGGWCCY	1 cut(s)	29
Psp6I	CCWGG	1 cut(s)	762
PspGI	CCWGG	1 cut(s)	762
PspPI	GGNCC	2 cut(s)	29, 970
PspPPI	RGGWCCY	1 cut(s)	29
PstNI	CAGNNNCTG	1 cut(s)	310
SapI	GCTCTTC	1 cut(s)	68
SaqAI	TTAA	2 cut(s)	494, 615
SatI	GCNGC	4 cut(s)	58, 101, 439, 503
Sau96I	GGNCC	2 cut(s)	29, 970
SchI	GAGTC	1 cut(s)	259
ScrFI	CCNGG	4 cut(s)	447, 507, 764, 872
SduI	GDGCHC	2 cut(s)	276, 961
SfaNI	GCATC	3 cut(s)	458, 616, 857
SinI	GGWCC	1 cut(s)	29
SmlI	CTYRAG	2 cut(s)	33, 960
SmoI	CTYRAG	2 cut(s)	33, 960
Sse9I	AATT	3 cut(s)	356, 517, 935
SsiI	CCGC	7 cut(s)	57, 60, 178, 293, 330, 378, 422
StyD4I	CCNGG	4 cut(s)	445, 505, 762, 870
TaaI	ACNGT	2 cut(s)	69, 775
TaqI	TCGA	3 cut(s)	71, 354, 541
TasI	AATT	3 cut(s)	356, 517, 935
TauI	GCSGC	1 cut(s)	60
TfiI	GAWTC	5 cut(s)	599, 667, 847, 878, 979
Tru1I	TTAA	2 cut(s)	494, 615
Tru9I	TTAA	2 cut(s)	494, 615
TscAI	CASTG	2 cut(s)	72, 959
TseI	GCWGC	3 cut(s)	100, 438, 502
TspDTI	ATGAA	2 cut(s)	704, 933
TspRI	CASTG	2 cut(s)	72, 959
VpaK11BI	GGWCC	1 cut(s)	29
XapI	RAATTY	1 cut(s)	356
XceI	RCATGY	1 cut(s)	754
Zsp2I	ATGCAT	1 cut(s)	493

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.