Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0012259

Physical Location & Seq

Genomic Coordinates Reverse (-)

57303927 .. 57305487

Gene Structure 1561 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00123460.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

ATGGAGGGCGTAGAAAATGGGGAAAAAGCCACGCAATGTCCAAACTGCTCGGCAGTGGTGCTATCGAAGAGTGCCCAGAAGAAGGTGTTGAAGCAGCAGAGGTGGGAGGCGAAGAAGGCGGAGAAGAAGGCCCAGGAAAAAGAGCACAGGAAGAGAGAGGGAGAGCGGAAGAGGAAGGAATGGGAGGAGACTCTGGCGAGCTTGAGCGAAGACGAGAGGTTGAAGATGATAGAGTCCAGGAAGAGCTTGAGGAAAGAGAGAATGGACAAGAGGTCAGAGGAGCGAGACCGAAAGACGGAGCGGCTCGCCAGAGCCAAGGAGTGTGGACAGAAGATTGTGATTGATCTCGAGTTCTCTCACCTCATGACGCCCTCTGAGACCCACAGCCTCGTTCAACAGATTATGTATTGTTATGCGGTGAATGGGAGGAGTAGTGAGCCGTGTCATCTGTGGCTGACTGGGTGTAAAGGAGAGATGGGTACGCAGTTGCGCAGGCTGCCGGGGTTTGATAAGTGGAGTGTTGAGAGGGAAGATGGGTCCTACATTGAGGCTTTGGAGAGTGAGAAGAAGAATCTGGTGTATCTGACGGCCGATTCGGAAAATGTGGTGGATGATCTTGATCGGAGCAAGATATATATTATTGGGGGATTGGTGGATCGGAATAGGTGGAAAGGAATCACAATGAAGAAAGCAGAGGAGCAGGGAATCCAAACTGCGAAGCTCCCCATTGGGAAGTACTTGAACATGTGCAGTTCCCAGGTCCTGACTGTGAATCAAGTGGTTGAGATTCTCCTCAAGTACTTGGAAACCAAAGATTGGAAGGCTTCCTTCTTCCAAGTGATTCCACAGCGAAAACAATTGCAAGCAGCTGATGATTCATCAGAGGAACCTCAACAACAGAAAGTAGAAGGAAGGGAAAAAAGTGAAGAGAAAGATGATGATCAATATGAAAGCAAAAAGCAGTGTGCTAATGGCCCTTCTTCCTTGGAAGATGTGACTGCTGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

tRNA_m1G_MT

Protein Analysis

335

Amino Acids

38.63

Weight (kDa)

7.98

Isoelectric Point (pI)

50.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012259)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47680
fragaria_vesca	FvH4_1g24140 FvH4_1g24140
malus_domestica	MD10G1339200.v1.1
prunus_persica	Prupe.4G003700_v2.0.a1 Prupe.4G003700_v2.0.a1 Prupe.4G003700_v2.0.a1 Prupe.4G003700_v2.0.a1 Prupe.4G003700_v2.0.a1
pyrus_communis	pycom10g28880
rosa_chinensis	RchiOBHm_Chr2g0120371
rosa_laevigata	RLG00000018553
rosa_roxburghii	Rroxscaffold_2G00123460
rosa_rugosa	Rorug02G0229100
rosa_samantha	Rh2AG285100 Rh2BG296200 Rh2CG273900 Rh2DG310100
rosa_wichuraiana	Rw2G022880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	491
AccB7I	CCANNNNNTGG	1 cut(s)	816
AccBSI	CCGCTC	2 cut(s)	166, 301
AciI	CCGC	4 cut(s)	119, 166, 301, 416
AclWI	GGATC	1 cut(s)	663
AcoI	YGGCCR	1 cut(s)	588
AcyI	GRCGYC	1 cut(s)	368
AfaI	GTAC	3 cut(s)	481, 737, 800
AfiI	CCNNNNNNNGG	3 cut(s)	82, 295, 816
AflIII	ACRYGT	1 cut(s)	744
AgsI	TTSAA	4 cut(s)	91, 223, 395, 742
AhdI	GACNNNNNGTC	1 cut(s)	271
AjnI	CCWGG	3 cut(s)	132, 236, 756
AluBI	AGCT	4 cut(s)	201, 246, 721, 869
AluI	AGCT	4 cut(s)	201, 246, 721, 869
Alw21I	GWGCWC	1 cut(s)	147
Alw26I	GTCTC	3 cut(s)	182, 279, 371
AlwI	GGATC	1 cut(s)	663
AlwNI	CAGNNNCTG	1 cut(s)	763
Ama87I	CYCGRG	1 cut(s)	347
AoxI	GGCC	3 cut(s)	129, 588, 973
ApeKI	GCWGC	4 cut(s)	94, 496, 866, 1001
ArsI	GACNNNNNNTTYG	2 cut(s)	577, 609
AspLEI	GCGC	1 cut(s)	492
AspS9I	GGNCC	4 cut(s)	130, 537, 760, 974
AsuC2I	CCSGG	1 cut(s)	501
AsuHPI	GGTGA	2 cut(s)	350, 430
AvaI	CYCGRG	1 cut(s)	347
AvaII	GGWCC	2 cut(s)	537, 760
BaeGI	GKGCMC	1 cut(s)	76
BbsI	GAAGAC	1 cut(s)	216
Bbv12I	GWGCWC	1 cut(s)	147
BbvI	GCAGC	4 cut(s)	106, 483, 878, 988
BccI	CCATC	2 cut(s)	469, 527
BceAI	ACGGC	2 cut(s)	424, 603
BciT130I	CCWGG	3 cut(s)	134, 238, 758
BclI	TGATCA	1 cut(s)	940
BcnI	CCSGG	1 cut(s)	501
BcoDI	GTCTC	3 cut(s)	182, 279, 371
BisI	GCNGC	5 cut(s)	95, 302, 497, 867, 1002
BlsI	GCNGC	5 cut(s)	96, 303, 498, 868, 1003
BmcAI	AGTACT	2 cut(s)	737, 800
Bme1390I	CCNGG	4 cut(s)	134, 238, 501, 758
Bme18I	GGWCC	2 cut(s)	537, 760
BmeRI	GACNNNNNGTC	1 cut(s)	271
BmeT110I	CYCGRG	1 cut(s)	347
BmgT120I	GGNCC	4 cut(s)	130, 537, 760, 974
BmiI	GGNNCC	2 cut(s)	538, 888
BmrFI	CCNGG	4 cut(s)	134, 238, 501, 758
BmrI	ACTGGG	1 cut(s)	468
BmuI	ACTGGG	1 cut(s)	468
BpiI	GAAGAC	1 cut(s)	216
BpuEI	CTTGAG	3 cut(s)	223, 268, 779
BpuMI	CCSGG	1 cut(s)	501
BsaBI	GATNNNNATC	2 cut(s)	618, 939
BsaHI	GRCGYC	1 cut(s)	368
BsaI	GGTCTC	2 cut(s)	279, 371
BsaJI	CCNNGG	5 cut(s)	132, 315, 500, 756, 984
BsaXI	ACNNNNNCTCC	2 cut(s)	418, 448
Bsc4I	CCNNNNNNNGG	3 cut(s)	82, 295, 816
Bse1I	ACTGG	1 cut(s)	463
Bse3DI	GCAATG	1 cut(s)	41
Bse8I	GATNNNNATC	2 cut(s)	618, 939
BseBI	CCWGG	3 cut(s)	134, 238, 758
BseDI	CCNNGG	5 cut(s)	132, 315, 500, 756, 984
BseGI	GGATG	1 cut(s)	616
BseJI	GATNNNNATC	2 cut(s)	618, 939
BseLI	CCNNNNNNNGG	3 cut(s)	82, 295, 816
BseMI	GCAATG	1 cut(s)	41
BseMII	CTCAG	1 cut(s)	366
BseNI	ACTGG	1 cut(s)	463
BseRI	GAGGAG	5 cut(s)	200, 293, 442, 710, 782
BseSI	GKGCMC	1 cut(s)	76
BseX3I	CGGCCG	1 cut(s)	588
BseXI	GCAGC	4 cut(s)	106, 483, 878, 988
BsgI	GTGCAG	1 cut(s)	769
Bsh1285I	CGRYCG	1 cut(s)	591
BshFI	GGCC	3 cut(s)	131, 590, 975
BsiEI	CGRYCG	1 cut(s)	591
BsiHKAI	GWGCWC	1 cut(s)	147
BsiHKCI	CYCGRG	1 cut(s)	347
BsiSI	CCGG	1 cut(s)	500
BslI	CCNNNNNNNGG	3 cut(s)	82, 295, 816
BsmAI	GTCTC	3 cut(s)	182, 279, 371
BsnI	GGCC	3 cut(s)	131, 590, 975
Bso31I	GGTCTC	2 cut(s)	279, 371
BsoBI	CYCGRG	1 cut(s)	347
Bsp1286I	GDGCHC	2 cut(s)	76, 147
Bsp143I	GATC	5 cut(s)	343, 613, 619, 655, 940
BspACI	CCGC	4 cut(s)	119, 166, 301, 416
BspANI	GGCC	3 cut(s)	131, 590, 975
BspCNI	CTCAG	1 cut(s)	367
BspHI	TCATGA	1 cut(s)	363
BspLI	GGNNCC	2 cut(s)	538, 888
BspPI	GGATC	1 cut(s)	663
BspQI	GCTCTTC	1 cut(s)	236
BspTNI	GGTCTC	2 cut(s)	279, 371
BsrBI	CCGCTC	2 cut(s)	166, 301
BsrDI	GCAATG	1 cut(s)	41
BsrI	ACTGG	1 cut(s)	463
BssECI	CCNNGG	5 cut(s)	132, 315, 500, 756, 984
BssMI	GATC	5 cut(s)	343, 613, 619, 655, 940
BssNI	GRCGYC	1 cut(s)	368
BssT1I	CCWWGG	2 cut(s)	315, 984
Bst2UI	CCWGG	3 cut(s)	134, 238, 758
Bst4CI	ACNGT	1 cut(s)	769
Bst6I	CTCTTC	5 cut(s)	62, 146, 164, 236, 921
BstACI	GRCGYC	1 cut(s)	368
BstC8I	GCNNGC	4 cut(s)	199, 306, 494, 864
BstDEI	CTNAG	1 cut(s)	375
BstF5I	GGATG	1 cut(s)	616
BstHHI	GCGC	1 cut(s)	492
BstKTI	GATC	5 cut(s)	346, 616, 622, 658, 943
BstMAI	GTCTC	3 cut(s)	182, 279, 371
BstMBI	GATC	5 cut(s)	343, 613, 619, 655, 940
BstMCI	CGRYCG	1 cut(s)	591
BstMWI	GCNNNNNNNGC	2 cut(s)	116, 496
BstNI	CCWGG	3 cut(s)	134, 238, 758
BstNSI	RCATGY	1 cut(s)	748
BstSCI	CCNGG	4 cut(s)	132, 236, 499, 756
BstSLI	GKGCMC	1 cut(s)	76
BstV1I	GCAGC	4 cut(s)	106, 483, 878, 988
BstV2I	GAAGAC	1 cut(s)	216
BstZI	CGGCCG	1 cut(s)	588
BsuRI	GGCC	3 cut(s)	131, 590, 975
BtsCI	GGATG	1 cut(s)	616
BtsI	GCAGTG	2 cut(s)	60, 968
BtsIMutI	CAGTG	2 cut(s)	60, 968
Cac8I	GCNNGC	4 cut(s)	199, 306, 494, 864
CaiI	CAGNNNCTG	1 cut(s)	763
CciI	TCATGA	1 cut(s)	363
CfoI	GCGC	1 cut(s)	492
Cfr13I	GGNCC	4 cut(s)	130, 537, 760, 974
CseI	GACGC	1 cut(s)	376
Csp6I	GTAC	3 cut(s)	480, 736, 799
CspCI	CAANNNNNGTGG	2 cut(s)	304, 339
CviAII	CATG	2 cut(s)	364, 745
CviQI	GTAC	3 cut(s)	480, 736, 799
DdeI	CTNAG	1 cut(s)	375
DpnI	GATC	5 cut(s)	345, 615, 621, 657, 942
DpnII	GATC	5 cut(s)	343, 613, 619, 655, 940
DriI	GACNNNNNGTC	1 cut(s)	271
EaeI	YGGCCR	1 cut(s)	588
EagI	CGGCCG	1 cut(s)	588
Eam1104I	CTCTTC	5 cut(s)	62, 146, 164, 236, 921
Eam1105I	GACNNNNNGTC	1 cut(s)	271
EarI	CTCTTC	5 cut(s)	62, 146, 164, 236, 921
EciI	GGCGGA	1 cut(s)	134
EclXI	CGGCCG	1 cut(s)	588
Eco130I	CCWWGG	2 cut(s)	315, 984
Eco31I	GGTCTC	2 cut(s)	279, 371
Eco47I	GGWCC	2 cut(s)	537, 760
Eco52I	CGGCCG	1 cut(s)	588
Eco88I	CYCGRG	1 cut(s)	347
EcoO109I	RGGNCCY	2 cut(s)	537, 760
EcoRII	CCWGG	3 cut(s)	132, 236, 756
EcoT14I	CCWWGG	2 cut(s)	315, 984
ErhI	CCWWGG	2 cut(s)	315, 984
FaeI	CATG	2 cut(s)	367, 748
FaiI	YATR	7 cut(s)	365, 404, 414, 634, 636, 746, 948
FalI	AAGNNNNNCTT	2 cut(s)	812, 844
FatI	CATG	2 cut(s)	363, 744
FbaI	TGATCA	1 cut(s)	940
Fnu4HI	GCNGC	5 cut(s)	95, 302, 497, 867, 1002
FokI	GGATG	1 cut(s)	623
Fsp4HI	GCNGC	5 cut(s)	95, 302, 497, 867, 1002
FspI	TGCGCA	1 cut(s)	491
GlaI	GCGC	1 cut(s)	491
GluI	GCNGC	5 cut(s)	95, 302, 497, 867, 1002
HaeIII	GGCC	3 cut(s)	131, 590, 975
HapII	CCGG	1 cut(s)	500
HgaI	GACGC	1 cut(s)	376
HhaI	GCGC	1 cut(s)	492
Hin1I	GRCGYC	1 cut(s)	368
Hin1II	CATG	2 cut(s)	367, 748
Hin6I	GCGC	1 cut(s)	490
HinP1I	GCGC	1 cut(s)	490
HpaII	CCGG	1 cut(s)	500
HphI	GGTGA	2 cut(s)	350, 430
Hpy166II	GTNNAC	1 cut(s)	326
Hpy188I	TCNGA	7 cut(s)	277, 376, 585, 598, 624, 660, 883
Hpy188III	TCNNGA	4 cut(s)	347, 364, 617, 763
Hpy8I	GTNNAC	1 cut(s)	326
HpyAV	CCTTC	9 cut(s)	76, 109, 121, 169, 814, 838, 902, 906, 987
HpyCH4III	ACNGT	1 cut(s)	769
HpyCH4V	TGCA	2 cut(s)	750, 862
HpyF10VI	GCNNNNNNNGC	2 cut(s)	116, 496
HpyF3I	CTNAG	1 cut(s)	375
Hsp92I	GRCGYC	1 cut(s)	368
Hsp92II	CATG	2 cut(s)	367, 748
HspAI	GCGC	1 cut(s)	490
Ksp22I	TGATCA	1 cut(s)	940
Kzo9I	GATC	5 cut(s)	343, 613, 619, 655, 940
LguI	GCTCTTC	1 cut(s)	236
LmnI	GCTCC	5 cut(s)	280, 298, 624, 697, 726
Lsp1109I	GCAGC	4 cut(s)	106, 483, 878, 988
MaeIII	GTNAC	1 cut(s)	994
MalI	GATC	5 cut(s)	345, 615, 621, 657, 942
MbiI	CCGCTC	2 cut(s)	166, 301
MboI	GATC	5 cut(s)	343, 613, 619, 655, 940
MfeI	CAATTG	1 cut(s)	857
MhlI	GDGCHC	2 cut(s)	76, 147
MluCI	AATT	1 cut(s)	857
MlyI	GAGTC	2 cut(s)	184, 242
MspA1I	CMGCKG	1 cut(s)	869
MspI	CCGG	1 cut(s)	500
MspR9I	CCNGG	4 cut(s)	134, 238, 501, 758
MunI	CAATTG	1 cut(s)	857
MvaI	CCWGG	3 cut(s)	134, 238, 758
MwoI	GCNNNNNNNGC	2 cut(s)	116, 496
NciI	CCSGG	1 cut(s)	501
NdeII	GATC	5 cut(s)	343, 613, 619, 655, 940
NlaIII	CATG	2 cut(s)	367, 748
NlaIV	GGNNCC	2 cut(s)	538, 888
NmeAIII	GCCGAG	1 cut(s)	29
NmuCI	GTSAC	1 cut(s)	994
NsbI	TGCGCA	1 cut(s)	491
NspI	RCATGY	1 cut(s)	748
PaeR7I	CTCGAG	1 cut(s)	347
PagI	TCATGA	1 cut(s)	363
PciI	ACATGT	1 cut(s)	744
PciSI	GCTCTTC	1 cut(s)	236
PfeI	GAWTC	8 cut(s)	571, 593, 675, 705, 772, 787, 841, 875
PflMI	CCANNNNNTGG	1 cut(s)	816
PfoI	TCCNGGA	1 cut(s)	236
PkrI	GCNGC	5 cut(s)	96, 303, 498, 868, 1003
PleI	GAGTC	2 cut(s)	184, 241
PpsI	GAGTC	2 cut(s)	184, 241
PpuMI	RGGWCCY	2 cut(s)	537, 760
PscI	ACATGT	1 cut(s)	744
Psp5II	RGGWCCY	2 cut(s)	537, 760
Psp6I	CCWGG	3 cut(s)	132, 236, 756
PspGI	CCWGG	3 cut(s)	132, 236, 756
PspN4I	GGNNCC	2 cut(s)	538, 888
PspPI	GGNCC	4 cut(s)	130, 537, 760, 974
PspPPI	RGGWCCY	2 cut(s)	537, 760
PstNI	CAGNNNCTG	1 cut(s)	763
PvuII	CAGCTG	1 cut(s)	869
RsaI	GTAC	3 cut(s)	481, 737, 800
RsaNI	GTAC	3 cut(s)	480, 736, 799
SapI	GCTCTTC	1 cut(s)	236
SatI	GCNGC	5 cut(s)	95, 302, 497, 867, 1002
Sau3AI	GATC	5 cut(s)	343, 613, 619, 655, 940
Sau96I	GGNCC	4 cut(s)	130, 537, 760, 974
ScaI	AGTACT	2 cut(s)	737, 800
SchI	GAGTC	2 cut(s)	184, 242
ScrFI	CCNGG	4 cut(s)	134, 238, 501, 758
SduI	GDGCHC	2 cut(s)	76, 147
Sfr274I	CTCGAG	1 cut(s)	347
SinI	GGWCC	2 cut(s)	537, 760
SlaI	CTCGAG	1 cut(s)	347
SmlI	CTYRAG	4 cut(s)	202, 247, 347, 794
SmoI	CTYRAG	4 cut(s)	202, 247, 347, 794
Sse9I	AATT	1 cut(s)	857
SsiI	CCGC	4 cut(s)	119, 166, 301, 416
StyD4I	CCNGG	4 cut(s)	132, 236, 499, 756
StyI	CCWWGG	2 cut(s)	315, 984
TaaI	ACNGT	1 cut(s)	769
TaqI	TCGA	2 cut(s)	65, 348
TaqII	GACCGA	1 cut(s)	303
TasI	AATT	1 cut(s)	857
TatI	WGTACW	2 cut(s)	735, 798
TauI	GCSGC	1 cut(s)	304
TfiI	GAWTC	8 cut(s)	571, 593, 675, 705, 772, 787, 841, 875
TscAI	CASTG	2 cut(s)	60, 968
TseFI	GTSAC	1 cut(s)	994
TseI	GCWGC	4 cut(s)	94, 496, 866, 1001
Tsp45I	GTSAC	1 cut(s)	994
TspDTI	ATGAA	3 cut(s)	698, 867, 963
TspGWI	ACGGA	1 cut(s)	311
TspRI	CASTG	2 cut(s)	60, 968
Van91I	CCANNNNNTGG	1 cut(s)	816
VpaK11BI	GGWCC	2 cut(s)	537, 760
XceI	RCATGY	1 cut(s)	748
XhoI	CTCGAG	1 cut(s)	347
ZrmI	AGTACT	2 cut(s)	737, 800

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.