Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0012259

Physical Location & Seq

Genomic Coordinates Forward (+)

252834 .. 256617

Gene Structure 3784 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G003700.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

ATGGAGGGCAGAGATAATGAGGAAAAAGGGCCCGAAGCGGAAGAAGGTAGGAACTACTGCAGAGGACTGTCGAAGAGCGCACAGAAGAAGCTGTTAAAGCAGCAGAAATGGGAAGCGAAGAAGGCAGAGAAGAAAGCTCTGGAAAAAGAGCAGAAGAAGAGAGAGGGGGAGCGGAAGCGGAAGGAATGGGAGGAGAGATTGGCGAGCGTTAGCGAAGAGGAGAGGGGGAAGCTGATAGAGTCGAGGAAGAGTTTAAGGAAGGAGAGGATGGAGCAGAGGTCAGAGGAGAGAGAGAGAAACACAGAGAGACTGAGCAGAGCCAAAGAGTGCGGACAGAAGATTGTGATCGATCTCGAATTCTCTCACCTCATGACCCCAGCCGAGATCAACAGCCTCGTTCAACAGATTATGTATTGTTACGCGGTGAATAAAAGATGCAGGGAGCCGGGTCATCTATGGTTGACGGGGTGCAAGGGAGAGATGGGTACGCAACTGAAGAGGCTCCCGGGGTTTGATAATTGGATTATAGAGAAGGAAGATCGATCGTACATGGAAGCTTTGGAGGATGAAAAGCAAAATCTGGTATATCTGACAGCTGATTCAGAAAATGTGGTTGATGATCTTGATTCAAGCAAGATATACATTGTTGGGGGGCTGGTGGATCGGAATCGGTGGAAAGGGATCACCATGAAGAAAGCAGAGGAGCAGGGCATTCAAACGGCAAAGCTTCCCATAGCCAACTACTTAAACATGTCCTCTTCCCAGGTGCTGACTGTGAATCAAGTGATAGAGATTCTGCTCAAGTTTTTGGAAACAAAGAATTGGAAGGACTCTTTCTTCCAAGTGATTCCTCAAAGAAAAAGATGCCAAGCGGATTCAGAGCAATCTCAACAAGTGAAAGGGGGAGAAAATGGAATTGACAGTGAAGAGAAAAATGATCAATTTGAAAGCAAAAAACAGTGTGCTCAAGACTCAACAAGTCAAGCCCCTTCCCATGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

tRNA_m1G_MT

Protein Analysis

334

Amino Acids

38.7

Weight (kDa)

7.51

Isoelectric Point (pI)

56.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012259)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47680
fragaria_vesca	FvH4_1g24140 FvH4_1g24140
malus_domestica	MD10G1339200.v1.1
prunus_persica	Prupe.4G003700_v2.0.a1 Prupe.4G003700_v2.0.a1 Prupe.4G003700_v2.0.a1 Prupe.4G003700_v2.0.a1 Prupe.4G003700_v2.0.a1
pyrus_communis	pycom10g28880
rosa_chinensis	RchiOBHm_Chr2g0120371
rosa_laevigata	RLG00000018553
rosa_roxburghii	Rroxscaffold_2G00123460
rosa_rugosa	Rorug02G0229100
rosa_samantha	Rh2AG285100 Rh2BG296200 Rh2CG273900 Rh2DG310100
rosa_wichuraiana	Rw2G022880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	172
AccII	CGCG	1 cut(s)	422
AciI	CCGC	6 cut(s)	38, 172, 178, 330, 422, 872
AclWI	GGATC	2 cut(s)	669, 689
AcsI	RAATTY	1 cut(s)	356
AcuI	CTGAAG	1 cut(s)	515
AfaI	GTAC	2 cut(s)	487, 548
AflIII	ACRYGT	1 cut(s)	750
AgsI	TTSAA	4 cut(s)	401, 630, 716, 947
AjnI	CCWGG	1 cut(s)	762
AluBI	AGCT	6 cut(s)	91, 137, 232, 557, 596, 727
AluI	AGCT	6 cut(s)	91, 137, 232, 557, 596, 727
Alw21I	GWGCWC	1 cut(s)	967
Alw26I	GTCTC	1 cut(s)	301
AlwI	GGATC	2 cut(s)	669, 689
AlwNI	CAGNNNCTG	1 cut(s)	769
Ama87I	CYCGRG	1 cut(s)	505
AoxI	GGCC	1 cut(s)	29
ApaI	GGGCCC	1 cut(s)	33
ApeKI	GCWGC	1 cut(s)	100
ApoI	RAATTY	1 cut(s)	356
AspLEI	GCGC	1 cut(s)	80
AspS9I	GGNCC	2 cut(s)	29, 30
AsuC2I	CCSGG	3 cut(s)	447, 506, 507
AsuHPI	GGTGA	3 cut(s)	356, 436, 676
AvaI	CYCGRG	1 cut(s)	505
BaeGI	GKGCMC	1 cut(s)	33
BanII	GRGCYC	1 cut(s)	33
Bbv12I	GWGCWC	1 cut(s)	967
BbvI	GCAGC	1 cut(s)	112
BccI	CCATC	2 cut(s)	262, 475
BceAI	ACGGC	1 cut(s)	735
BciT130I	CCWGG	1 cut(s)	764
BclI	TGATCA	1 cut(s)	937
BcnI	CCSGG	3 cut(s)	447, 506, 507
BcoDI	GTCTC	1 cut(s)	301
BfmI	CTRYAG	1 cut(s)	58
BisI	GCNGC	1 cut(s)	101
BlsI	GCNGC	1 cut(s)	102
Bme1390I	CCNGG	4 cut(s)	447, 506, 507, 764
BmeT110I	CYCGRG	1 cut(s)	505
BmgT120I	GGNCC	2 cut(s)	29, 30
BmiI	GGNNCC	3 cut(s)	31, 444, 503
BmrFI	CCNGG	4 cut(s)	447, 506, 507, 764
BmsI	GCATC	2 cut(s)	425, 854
BpuEI	CTTGAG	2 cut(s)	785, 951
BpuMI	CCSGG	3 cut(s)	447, 506, 507
Bsa29I	ATCGAT	2 cut(s)	348, 541
BsaBI	GATNNNNATC	2 cut(s)	344, 666
BsaJI	CCNNGG	3 cut(s)	505, 506, 762
BsaXI	ACNNNNNCTCC	2 cut(s)	263, 293
Bse8I	GATNNNNATC	2 cut(s)	344, 666
BseBI	CCWGG	1 cut(s)	764
BseCI	ATCGAT	2 cut(s)	348, 541
BseDI	CCNNGG	3 cut(s)	505, 506, 762
BseGI	GGATG	2 cut(s)	273, 571
BseJI	GATNNNNATC	2 cut(s)	344, 666
BseMII	CTCAG	1 cut(s)	302
BseRI	GAGGAG	4 cut(s)	206, 233, 299, 716
BseSI	GKGCMC	1 cut(s)	33
BseXI	GCAGC	1 cut(s)	112
BseYI	CCCAGC	1 cut(s)	376
Bsh1236I	CGCG	1 cut(s)	422
Bsh1285I	CGRYCG	1 cut(s)	545
BshFI	GGCC	1 cut(s)	31
BshVI	ATCGAT	2 cut(s)	348, 541
BsiEI	CGRYCG	1 cut(s)	545
BsiHKAI	GWGCWC	1 cut(s)	967
BsiHKCI	CYCGRG	1 cut(s)	505
BsiSI	CCGG	2 cut(s)	446, 506
BsmAI	GTCTC	1 cut(s)	301
BsmI	GAATGC	1 cut(s)	711
BsnI	GGCC	1 cut(s)	31
BsoBI	CYCGRG	1 cut(s)	505
Bsp120I	GGGCCC	1 cut(s)	29
Bsp1286I	GDGCHC	2 cut(s)	33, 967
Bsp143I	GATC	9 cut(s)	345, 349, 384, 538, 542, 619, 661, 681, 937
BspACI	CCGC	6 cut(s)	38, 172, 178, 330, 422, 872
BspANI	GGCC	1 cut(s)	31
BspCNI	CTCAG	1 cut(s)	303
BspDI	ATCGAT	2 cut(s)	348, 541
BspFNI	CGCG	1 cut(s)	422
BspHI	TCATGA	1 cut(s)	369
BspLI	GGNNCC	3 cut(s)	31, 444, 503
BspMAI	CTGCAG	1 cut(s)	62
BspPI	GGATC	2 cut(s)	669, 689
BspQI	GCTCTTC	1 cut(s)	68
BsrBI	CCGCTC	1 cut(s)	172
BssECI	CCNNGG	3 cut(s)	505, 506, 762
BssMI	GATC	9 cut(s)	345, 349, 384, 538, 542, 619, 661, 681, 937
Bst2UI	CCWGG	1 cut(s)	764
Bst4CI	ACNGT	4 cut(s)	69, 775, 923, 960
Bst6I	CTCTTC	7 cut(s)	68, 152, 210, 242, 491, 763, 921
BstC8I	GCNNGC	1 cut(s)	205
BstDEI	CTNAG	1 cut(s)	311
BstF5I	GGATG	2 cut(s)	273, 571
BstFNI	CGCG	1 cut(s)	422
BstHHI	GCGC	1 cut(s)	80
BstKTI	GATC	9 cut(s)	348, 352, 387, 541, 545, 622, 664, 684, 940
BstMAI	GTCTC	1 cut(s)	301
BstMBI	GATC	9 cut(s)	345, 349, 384, 538, 542, 619, 661, 681, 937
BstMCI	CGRYCG	1 cut(s)	545
BstMWI	GCNNNNNNNGC	2 cut(s)	97, 122
BstNI	CCWGG	1 cut(s)	764
BstNSI	RCATGY	1 cut(s)	754
BstSCI	CCNGG	4 cut(s)	445, 504, 505, 762
BstSFI	CTRYAG	1 cut(s)	58
BstSLI	GKGCMC	1 cut(s)	33
BstUI	CGCG	1 cut(s)	422
BstV1I	GCAGC	1 cut(s)	112
Bsu15I	ATCGAT	2 cut(s)	348, 541
BsuRI	GGCC	1 cut(s)	31
BsuTUI	ATCGAT	2 cut(s)	348, 541
BtsCI	GGATG	2 cut(s)	273, 571
BtsIMutI	CAGTG	2 cut(s)	928, 965
Cac8I	GCNNGC	1 cut(s)	205
CaiI	CAGNNNCTG	1 cut(s)	769
CciI	TCATGA	1 cut(s)	369
CfoI	GCGC	1 cut(s)	80
Cfr13I	GGNCC	2 cut(s)	29, 30
Cfr9I	CCCGGG	1 cut(s)	505
ClaI	ATCGAT	2 cut(s)	348, 541
Csp6I	GTAC	2 cut(s)	486, 547
CviAII	CATG	5 cut(s)	370, 550, 688, 751, 995
CviQI	GTAC	2 cut(s)	486, 547
DdeI	CTNAG	1 cut(s)	311
DpnI	GATC	9 cut(s)	347, 351, 386, 540, 544, 621, 663, 683, 939
DpnII	GATC	9 cut(s)	345, 349, 384, 538, 542, 619, 661, 681, 937
Eam1104I	CTCTTC	7 cut(s)	68, 152, 210, 242, 491, 763, 921
EarI	CTCTTC	7 cut(s)	68, 152, 210, 242, 491, 763, 921
Eco24I	GRGCYC	1 cut(s)	33
Eco57I	CTGAAG	1 cut(s)	515
Eco88I	CYCGRG	1 cut(s)	505
EcoO109I	RGGNCCY	1 cut(s)	29
EcoRI	GAATTC	1 cut(s)	356
EcoRII	CCWGG	1 cut(s)	762
EcoT38I	GRGCYC	1 cut(s)	33
FaeI	CATG	5 cut(s)	373, 553, 691, 754, 998
FatI	CATG	5 cut(s)	369, 549, 687, 750, 994
FbaI	TGATCA	1 cut(s)	937
Fnu4HI	GCNGC	1 cut(s)	101
FokI	GGATG	2 cut(s)	280, 578
FriOI	GRGCYC	1 cut(s)	33
Fsp4HI	GCNGC	1 cut(s)	101
GlaI	GCGC	1 cut(s)	79
GluI	GCNGC	1 cut(s)	101
GsaI	CCCAGC	1 cut(s)	380
HaeIII	GGCC	1 cut(s)	31
HapII	CCGG	2 cut(s)	446, 506
HhaI	GCGC	1 cut(s)	80
Hin1II	CATG	5 cut(s)	373, 553, 691, 754, 998
Hin6I	GCGC	1 cut(s)	78
HinP1I	GCGC	1 cut(s)	78
HincII	GTYRAC	1 cut(s)	462
HindII	GTYRAC	1 cut(s)	462
HindIII	AAGCTT	2 cut(s)	555, 725
HpaII	CCGG	2 cut(s)	446, 506
HphI	GGTGA	3 cut(s)	356, 436, 676
Hpy166II	GTNNAC	1 cut(s)	462
Hpy188I	TCNGA	5 cut(s)	283, 591, 604, 666, 880
Hpy188III	TCNNGA	5 cut(s)	140, 353, 370, 623, 968
Hpy8I	GTNNAC	1 cut(s)	462
HpyAV	CCTTC	7 cut(s)	38, 115, 175, 253, 526, 820, 999
HpyCH4III	ACNGT	4 cut(s)	69, 775, 923, 960
HpyCH4V	TGCA	3 cut(s)	60, 438, 471
HpyF10VI	GCNNNNNNNGC	2 cut(s)	97, 122
HpyF3I	CTNAG	1 cut(s)	311
Hsp92II	CATG	5 cut(s)	373, 553, 691, 754, 998
HspAI	GCGC	1 cut(s)	78
Ksp22I	TGATCA	1 cut(s)	937
Kzo9I	GATC	9 cut(s)	345, 349, 384, 538, 542, 619, 661, 681, 937
LguI	GCTCTTC	1 cut(s)	68
LmnI	GCTCC	5 cut(s)	169, 271, 442, 507, 703
Lsp1109I	GCAGC	1 cut(s)	112
LweI	GCATC	2 cut(s)	425, 854
MaeIII	GTNAC	1 cut(s)	416
MalI	GATC	9 cut(s)	347, 351, 386, 540, 544, 621, 663, 683, 939
MbiI	CCGCTC	1 cut(s)	172
MboI	GATC	9 cut(s)	345, 349, 384, 538, 542, 619, 661, 681, 937
MhlI	GDGCHC	2 cut(s)	33, 967
MluCI	AATT	5 cut(s)	356, 517, 820, 915, 941
MlyI	GAGTC	3 cut(s)	248, 824, 965
MseI	TTAA	4 cut(s)	95, 254, 746, 1000
MspA1I	CMGCKG	1 cut(s)	596
MspI	CCGG	2 cut(s)	446, 506
MspR9I	CCNGG	4 cut(s)	447, 506, 507, 764
Mva1269I	GAATGC	1 cut(s)	711
MvaI	CCWGG	1 cut(s)	764
MvnI	CGCG	1 cut(s)	422
MwoI	GCNNNNNNNGC	2 cut(s)	97, 122
NciI	CCSGG	3 cut(s)	447, 506, 507
NdeII	GATC	9 cut(s)	345, 349, 384, 538, 542, 619, 661, 681, 937
NlaIII	CATG	5 cut(s)	373, 553, 691, 754, 998
NlaIV	GGNNCC	3 cut(s)	31, 444, 503
NmeAIII	GCCGAG	1 cut(s)	406
NspI	RCATGY	1 cut(s)	754
PagI	TCATGA	1 cut(s)	369
PciI	ACATGT	1 cut(s)	750
PciSI	GCTCTTC	1 cut(s)	68
PctI	GAATGC	1 cut(s)	711
PfeI	GAWTC	7 cut(s)	599, 626, 667, 778, 793, 847, 875
PkrI	GCNGC	1 cut(s)	102
Ple19I	CGATCG	1 cut(s)	545
PleI	GAGTC	3 cut(s)	247, 824, 965
PpsI	GAGTC	3 cut(s)	247, 824, 965
PscI	ACATGT	1 cut(s)	750
Psp6I	CCWGG	1 cut(s)	762
PspFI	CCCAGC	1 cut(s)	376
PspGI	CCWGG	1 cut(s)	762
PspN4I	GGNNCC	3 cut(s)	31, 444, 503
PspOMI	GGGCCC	1 cut(s)	29
PspPI	GGNCC	2 cut(s)	29, 30
PstI	CTGCAG	1 cut(s)	62
PstNI	CAGNNNCTG	1 cut(s)	769
PvuI	CGATCG	1 cut(s)	545
PvuII	CAGCTG	1 cut(s)	596
RsaI	GTAC	2 cut(s)	487, 548
RsaNI	GTAC	2 cut(s)	486, 547
SapI	GCTCTTC	1 cut(s)	68
SaqAI	TTAA	4 cut(s)	95, 254, 746, 1000
SatI	GCNGC	1 cut(s)	101
Sau3AI	GATC	9 cut(s)	345, 349, 384, 538, 542, 619, 661, 681, 937
Sau96I	GGNCC	2 cut(s)	29, 30
SchI	GAGTC	3 cut(s)	248, 824, 965
ScrFI	CCNGG	4 cut(s)	447, 506, 507, 764
SduI	GDGCHC	2 cut(s)	33, 967
SfaNI	GCATC	2 cut(s)	425, 854
SfcI	CTRYAG	1 cut(s)	58
SmaI	CCCGGG	1 cut(s)	507
SmlI	CTYRAG	2 cut(s)	800, 966
SmoI	CTYRAG	2 cut(s)	800, 966
Sse9I	AATT	5 cut(s)	356, 517, 820, 915, 941
SsiI	CCGC	6 cut(s)	38, 172, 178, 330, 422, 872
StyD4I	CCNGG	4 cut(s)	445, 504, 505, 762
TaaI	ACNGT	4 cut(s)	69, 775, 923, 960
TaqI	TCGA	5 cut(s)	71, 242, 348, 354, 541
TasI	AATT	5 cut(s)	356, 517, 820, 915, 941
TfiI	GAWTC	7 cut(s)	599, 626, 667, 778, 793, 847, 875
Tru1I	TTAA	4 cut(s)	95, 254, 746, 1000
Tru9I	TTAA	4 cut(s)	95, 254, 746, 1000
TscAI	CASTG	2 cut(s)	928, 965
TseI	GCWGC	1 cut(s)	100
TspDTI	ATGAA	2 cut(s)	582, 704
TspMI	CCCGGG	1 cut(s)	505
TspRI	CASTG	2 cut(s)	928, 965
XapI	RAATTY	1 cut(s)	356
XceI	RCATGY	1 cut(s)	754
XmaI	CCCGGG	1 cut(s)	505

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.