Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0012259

Physical Location & Seq

Genomic Coordinates Reverse (-)

29361696 .. 29364390

Gene Structure 2695 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g28880.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

ATGGGGGGAAGGGGGAACCAATGCAATGCTAACATGAGAAGTGAGAGAAAGAAGCCTCCATCTGAAATTACACAAAGCAGGAGCATTGTAGCCAGCAATAGCAATCGAAATATGGAGGGCAAAGAAAATCAGGAAAAAGGTCCTCAAGAGGAGGAATGCACGAATGGCGGCGGATCACTGTCGAAGAGCGCCCAGAAGAAGCTGTTGAAGCAGCAGAAATGGGAAGCGAAGAAGGCAGAGAAGAAAGCTCAGGAAAAAGAGCAAAAGAAGAGAGAGGTAGAGAGGAAGCGGAGGGAATGGGAGGAGAAGTTGGCGAGCTTGGGCGAGGAGGAGAGGGAGAAGCTGATAGAGGAGAGGAAGAGTCTGAGGAAGGAGAGGATGGAGCACAAGTCAGAGGAGCGAGCGGTGCAGACACAGAGACTGAGTAAAGCCAAAGAGTGCGGACAGAAGATCGTGATTGACCTCGAATTCTCTCACCTCATGACCCCCGCCGAGATCAACAGCCTCGTTCAACAGATTATGTATTGTTACGCGGTGAACAAAAGGTGCAGCGAGCCAGGCCATCTGTGGTTGACAGGGTGCAAGGGAGACATGGGGAATGCATTAAAGAAGCTACCGGGGTTTGATAATTGGATCATAGAGAAGGAAGATCGACCCTACATTGAAGCTCTGGAAAACAAGAAGCAAAATCTGGTGTATCTGACTGCTGATTCGGAAAATGTGGTTAATGAGCTGGATGCAAGCAAGATATACATTGTTGGGGGATTGGTGGATCGGAATCGTTGGAAAGGGATCACCATGAAGAAAGCAGAGGAGCAGGGTATCCAAACGGCCAAACTCCCCATAGGCAACTACTTGAACATGTCCTCTTCCCAGGTGCTAACTGTGAACCAAGTGATAGAGATACTGCTAAAGTATTTGGAAACAAAGGATTGGAAGGAGGCTTTCTTCCAAGTGATTCCTCAAAGAAAAAGGGGATGCCCGGCTGATTCAGATCAGCAATCTAAACAAGTGAATGGTGAAGAAAATGAAGAGAAAGATGATCAATTTGGAAGCAAAAAGCAGTGTGCTCAAGTCAAGGGCCTTCCAATTCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

tRNA_m1G_MT

Protein Analysis

366

Amino Acids

41.84

Weight (kDa)

8.94

Isoelectric Point (pI)

54.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012259)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47680
fragaria_vesca	FvH4_1g24140 FvH4_1g24140
malus_domestica	MD10G1339200.v1.1
prunus_persica	Prupe.4G003700_v2.0.a1 Prupe.4G003700_v2.0.a1 Prupe.4G003700_v2.0.a1 Prupe.4G003700_v2.0.a1 Prupe.4G003700_v2.0.a1
pyrus_communis	pycom10g28880
rosa_chinensis	RchiOBHm_Chr2g0120371
rosa_laevigata	RLG00000018553
rosa_roxburghii	Rroxscaffold_2G00123460
rosa_rugosa	Rorug02G0229100
rosa_samantha	Rh2AG285100 Rh2BG296200 Rh2CG273900 Rh2DG310100
rosa_wichuraiana	Rw2G022880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	404
AccII	CGCG	1 cut(s)	533
AciI	CCGC	7 cut(s)	168, 171, 289, 404, 441, 489, 533
AclWI	GGATC	4 cut(s)	181, 641, 780, 800
AcoI	YGGCCR	1 cut(s)	831
AcsI	RAATTY	1 cut(s)	467
AflIII	ACRYGT	1 cut(s)	861
AgsI	TTSAA	4 cut(s)	208, 512, 665, 859
AjnI	CCWGG	2 cut(s)	556, 873
AluBI	AGCT	7 cut(s)	202, 248, 318, 343, 613, 668, 733
AluI	AGCT	7 cut(s)	202, 248, 318, 343, 613, 668, 733
Alw21I	GWGCWC	2 cut(s)	387, 1072
Alw26I	GTCTC	2 cut(s)	412, 582
AlwI	GGATC	4 cut(s)	181, 641, 780, 800
AlwNI	CAGNNNCTG	1 cut(s)	421
AoxI	GGCC	3 cut(s)	559, 831, 1081
ApeKI	GCWGC	2 cut(s)	211, 549
ApoI	RAATTY	1 cut(s)	467
ArsI	GACNNNNNNTTYG	2 cut(s)	694, 726
AspLEI	GCGC	1 cut(s)	191
AspS9I	GGNCC	2 cut(s)	140, 1081
AsuC2I	CCSGG	2 cut(s)	618, 983
AsuHPI	GGTGA	4 cut(s)	467, 547, 787, 1031
AvaII	GGWCC	1 cut(s)	140
Bbv12I	GWGCWC	2 cut(s)	387, 1072
BbvI	GCAGC	2 cut(s)	223, 561
BccI	CCATC	3 cut(s)	67, 373, 570
BceAI	ACGGC	1 cut(s)	846
BciT130I	CCWGG	2 cut(s)	558, 875
BciVI	GTATCC	1 cut(s)	833
BclI	TGATCA	1 cut(s)	1042
BcnI	CCSGG	2 cut(s)	618, 983
BcoDI	GTCTC	2 cut(s)	412, 582
BfoI	RGCGCY	1 cut(s)	192
BfuI	GTATCC	1 cut(s)	833
BisI	GCNGC	3 cut(s)	169, 212, 550
BlsI	GCNGC	3 cut(s)	170, 213, 551
Bme1390I	CCNGG	4 cut(s)	558, 618, 875, 983
Bme18I	GGWCC	1 cut(s)	140
BmgT120I	GGNCC	2 cut(s)	140, 1081
BmiI	GGNNCC	1 cut(s)	17
BmrFI	CCNGG	4 cut(s)	558, 618, 875, 983
BmsI	GCATC	2 cut(s)	727, 968
Bpu10I	CCTNAGC	1 cut(s)	249
BpuEI	CTTGAG	2 cut(s)	129, 1056
BpuMI	CCSGG	2 cut(s)	618, 983
BsaBI	GATNNNNATC	2 cut(s)	777, 993
BsaJI	CCNNGG	2 cut(s)	617, 873
BsaXI	ACNNNNNCTCC	4 cut(s)	293, 323, 374, 404
Bse3DI	GCAATG	1 cut(s)	31
Bse8I	GATNNNNATC	2 cut(s)	777, 993
BseBI	CCWGG	2 cut(s)	558, 875
BseDI	CCNNGG	2 cut(s)	617, 873
BseGI	GGATG	3 cut(s)	384, 742, 983
BseJI	GATNNNNATC	2 cut(s)	777, 993
BseMI	GCAATG	1 cut(s)	31
BseMII	CTCAG	3 cut(s)	263, 356, 413
BseRI	GAGGAG	7 cut(s)	164, 317, 341, 344, 365, 410, 827
BseXI	GCAGC	2 cut(s)	223, 561
BsgI	GTGCAG	2 cut(s)	428, 568
Bsh1236I	CGCG	1 cut(s)	533
BshFI	GGCC	3 cut(s)	561, 833, 1083
BsiHKAI	GWGCWC	2 cut(s)	387, 1072
BsiSI	CCGG	2 cut(s)	617, 983
BsmAI	GTCTC	2 cut(s)	412, 582
BsmI	GAATGC	2 cut(s)	161, 604
BsnI	GGCC	3 cut(s)	561, 833, 1083
Bsp1286I	GDGCHC	2 cut(s)	387, 1072
Bsp143I	GATC	9 cut(s)	173, 450, 495, 633, 649, 772, 792, 994, 1042
BspACI	CCGC	7 cut(s)	168, 171, 289, 404, 441, 489, 533
BspANI	GGCC	3 cut(s)	561, 833, 1083
BspCNI	CTCAG	3 cut(s)	262, 357, 414
BspFNI	CGCG	1 cut(s)	533
BspHI	TCATGA	1 cut(s)	480
BspLI	GGNNCC	1 cut(s)	17
BspPI	GGATC	4 cut(s)	181, 641, 780, 800
BspQI	GCTCTTC	1 cut(s)	179
BsrBI	CCGCTC	1 cut(s)	404
BsrDI	GCAATG	1 cut(s)	31
BssECI	CCNNGG	2 cut(s)	617, 873
BssMI	GATC	9 cut(s)	173, 450, 495, 633, 649, 772, 792, 994, 1042
Bst2UI	CCWGG	2 cut(s)	558, 875
Bst4CI	ACNGT	2 cut(s)	180, 886
Bst6I	CTCTTC	5 cut(s)	179, 263, 353, 874, 1026
BstC8I	GCNNGC	5 cut(s)	94, 316, 402, 554, 742
BstDEI	CTNAG	3 cut(s)	249, 365, 422
BstF5I	GGATG	3 cut(s)	384, 742, 983
BstFNI	CGCG	1 cut(s)	533
BstH2I	RGCGCY	1 cut(s)	192
BstHHI	GCGC	1 cut(s)	191
BstKTI	GATC	9 cut(s)	176, 453, 498, 636, 652, 775, 795, 997, 1045
BstMAI	GTCTC	2 cut(s)	412, 582
BstMBI	GATC	9 cut(s)	173, 450, 495, 633, 649, 772, 792, 994, 1042
BstMWI	GCNNNNNNNGC	5 cut(s)	165, 208, 233, 406, 558
BstNI	CCWGG	2 cut(s)	558, 875
BstNSI	RCATGY	1 cut(s)	865
BstSCI	CCNGG	4 cut(s)	556, 616, 873, 981
BstUI	CGCG	1 cut(s)	533
BstV1I	GCAGC	2 cut(s)	223, 561
BsuI	GTATCC	1 cut(s)	833
BsuRI	GGCC	3 cut(s)	561, 833, 1083
BtsCI	GGATG	3 cut(s)	384, 742, 983
BtsI	GCAGTG	1 cut(s)	1070
BtsIMutI	CAGTG	2 cut(s)	176, 1070
Cac8I	GCNNGC	5 cut(s)	94, 316, 402, 554, 742
CaiI	CAGNNNCTG	1 cut(s)	421
CciI	TCATGA	1 cut(s)	480
CfoI	GCGC	1 cut(s)	191
Cfr13I	GGNCC	2 cut(s)	140, 1081
CviAII	CATG	6 cut(s)	34, 481, 592, 799, 862, 1095
DdeI	CTNAG	3 cut(s)	249, 365, 422
DpnI	GATC	9 cut(s)	175, 452, 497, 635, 651, 774, 794, 996, 1044
DpnII	GATC	9 cut(s)	173, 450, 495, 633, 649, 772, 792, 994, 1042
EaeI	YGGCCR	1 cut(s)	831
Eam1104I	CTCTTC	5 cut(s)	179, 263, 353, 874, 1026
EarI	CTCTTC	5 cut(s)	179, 263, 353, 874, 1026
EciI	GGCGGA	1 cut(s)	186
Eco47I	GGWCC	1 cut(s)	140
EcoO109I	RGGNCCY	2 cut(s)	140, 1081
EcoRI	GAATTC	1 cut(s)	467
EcoRII	CCWGG	2 cut(s)	556, 873
EcoT22I	ATGCAT	1 cut(s)	604
FaeI	CATG	6 cut(s)	37, 484, 595, 802, 865, 1098
FatI	CATG	6 cut(s)	33, 480, 591, 798, 861, 1094
FauI	CCCGC	1 cut(s)	496
FbaI	TGATCA	1 cut(s)	1042
Fnu4HI	GCNGC	3 cut(s)	169, 212, 550
FokI	GGATG	3 cut(s)	391, 749, 990
Fsp4HI	GCNGC	3 cut(s)	169, 212, 550
GlaI	GCGC	1 cut(s)	190
GluI	GCNGC	3 cut(s)	169, 212, 550
HaeII	RGCGCY	1 cut(s)	192
HaeIII	GGCC	3 cut(s)	561, 833, 1083
HapII	CCGG	2 cut(s)	617, 983
HhaI	GCGC	1 cut(s)	191
Hin1II	CATG	6 cut(s)	37, 484, 595, 802, 865, 1098
Hin6I	GCGC	1 cut(s)	189
HinP1I	GCGC	1 cut(s)	189
HincII	GTYRAC	1 cut(s)	573
HindII	GTYRAC	1 cut(s)	573
HinfI	GANTC	5 cut(s)	361, 710, 778, 958, 989
HpaII	CCGG	2 cut(s)	617, 983
HphI	GGTGA	4 cut(s)	467, 547, 787, 1031
Hpy166II	GTNNAC	3 cut(s)	538, 573, 889
Hpy188I	TCNGA	7 cut(s)	64, 366, 394, 702, 715, 777, 994
Hpy188III	TCNNGA	6 cut(s)	131, 146, 251, 454, 481, 671
Hpy8I	GTNNAC	3 cut(s)	538, 573, 889
HpyAV	CCTTC	6 cut(s)	3, 226, 364, 637, 931, 1094
HpyCH4III	ACNGT	2 cut(s)	180, 886
HpyCH4V	TGCA	7 cut(s)	24, 159, 409, 549, 582, 602, 740
HpyF10VI	GCNNNNNNNGC	5 cut(s)	165, 208, 233, 406, 558
HpyF3I	CTNAG	3 cut(s)	249, 365, 422
Hsp92II	CATG	6 cut(s)	37, 484, 595, 802, 865, 1098
HspAI	GCGC	1 cut(s)	189
Ksp22I	TGATCA	1 cut(s)	1042
Kzo9I	GATC	9 cut(s)	173, 450, 495, 633, 649, 772, 792, 994, 1042
LguI	GCTCTTC	1 cut(s)	179
LmnI	GCTCC	4 cut(s)	81, 382, 397, 814
Lsp1109I	GCAGC	2 cut(s)	223, 561
LweI	GCATC	2 cut(s)	727, 968
MaeIII	GTNAC	1 cut(s)	527
MalI	GATC	9 cut(s)	175, 452, 497, 635, 651, 774, 794, 996, 1044
MbiI	CCGCTC	1 cut(s)	404
MboI	GATC	9 cut(s)	173, 450, 495, 633, 649, 772, 792, 994, 1042
MhlI	GDGCHC	2 cut(s)	387, 1072
MluCI	AATT	5 cut(s)	66, 467, 628, 1046, 1089
MlyI	GAGTC	1 cut(s)	370
MmeI	TCCRAC	1 cut(s)	764
Mph1103I	ATGCAT	1 cut(s)	604
MseI	TTAA	2 cut(s)	605, 726
MspI	CCGG	2 cut(s)	617, 983
MspR9I	CCNGG	4 cut(s)	558, 618, 875, 983
Mva1269I	GAATGC	2 cut(s)	161, 604
MvaI	CCWGG	2 cut(s)	558, 875
MvnI	CGCG	1 cut(s)	533
MwoI	GCNNNNNNNGC	5 cut(s)	165, 208, 233, 406, 558
NciI	CCSGG	2 cut(s)	618, 983
NdeII	GATC	9 cut(s)	173, 450, 495, 633, 649, 772, 792, 994, 1042
NlaIII	CATG	6 cut(s)	37, 484, 595, 802, 865, 1098
NlaIV	GGNNCC	1 cut(s)	17
NmeAIII	GCCGAG	1 cut(s)	517
NsiI	ATGCAT	1 cut(s)	604
NspI	RCATGY	1 cut(s)	865
PagI	TCATGA	1 cut(s)	480
PciI	ACATGT	1 cut(s)	861
PciSI	GCTCTTC	1 cut(s)	179
PctI	GAATGC	2 cut(s)	161, 604
PfeI	GAWTC	4 cut(s)	710, 778, 958, 989
PkrI	GCNGC	3 cut(s)	170, 213, 551
PleI	GAGTC	1 cut(s)	369
PpsI	GAGTC	1 cut(s)	369
PpuMI	RGGWCCY	1 cut(s)	140
PscI	ACATGT	1 cut(s)	861
Psp5II	RGGWCCY	1 cut(s)	140
Psp6I	CCWGG	2 cut(s)	556, 873
PspGI	CCWGG	2 cut(s)	556, 873
PspN4I	GGNNCC	1 cut(s)	17
PspPI	GGNCC	2 cut(s)	140, 1081
PspPPI	RGGWCCY	1 cut(s)	140
PstNI	CAGNNNCTG	1 cut(s)	421
SapI	GCTCTTC	1 cut(s)	179
SaqAI	TTAA	2 cut(s)	605, 726
SatI	GCNGC	3 cut(s)	169, 212, 550
Sau3AI	GATC	9 cut(s)	173, 450, 495, 633, 649, 772, 792, 994, 1042
Sau96I	GGNCC	2 cut(s)	140, 1081
SchI	GAGTC	1 cut(s)	370
ScrFI	CCNGG	4 cut(s)	558, 618, 875, 983
SduI	GDGCHC	2 cut(s)	387, 1072
SfaNI	GCATC	2 cut(s)	727, 968
SinI	GGWCC	1 cut(s)	140
SmlI	CTYRAG	2 cut(s)	144, 1071
SmoI	CTYRAG	2 cut(s)	144, 1071
Sse9I	AATT	5 cut(s)	66, 467, 628, 1046, 1089
SsiI	CCGC	7 cut(s)	168, 171, 289, 404, 441, 489, 533
StyD4I	CCNGG	4 cut(s)	556, 616, 873, 981
TaaI	ACNGT	2 cut(s)	180, 886
TaqI	TCGA	4 cut(s)	106, 182, 465, 652
TasI	AATT	5 cut(s)	66, 467, 628, 1046, 1089
TauI	GCSGC	1 cut(s)	171
TfiI	GAWTC	4 cut(s)	710, 778, 958, 989
Tru1I	TTAA	2 cut(s)	605, 726
Tru9I	TTAA	2 cut(s)	605, 726
TscAI	CASTG	2 cut(s)	183, 1070
TseI	GCWGC	2 cut(s)	211, 549
TspDTI	ATGAA	2 cut(s)	815, 1044
TspRI	CASTG	2 cut(s)	183, 1070
VpaK11BI	GGWCC	1 cut(s)	140
XapI	RAATTY	1 cut(s)	467
XceI	RCATGY	1 cut(s)	865
XcmI	CCANNNNNNNNNTGG	1 cut(s)	564
Zsp2I	ATGCAT	1 cut(s)	604

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.