Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0012259

Physical Location & Seq

Genomic Coordinates Forward (+)

32887163 .. 32888840

Gene Structure 1678 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G022880.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGTCCGAACTGCTCGGCAGTGGTGCTATCGAAGAGTGCCCAGAAGAAGGTGTTGAAGCAGCAGAGGTGGGAGGCGAAGAAGGCGGAGAAGAAGGCCCAGGAAAAAGAGCACAAGAAGAGAGAGGGAGAGCGGAAGCGGAAGGAATGGGAGGAGACTCTGGCGAGCTTGAGCGAAGACGAGAGGTTGAAGATGATAGAGTCCAGGAAGAGCTTGAGGAAGGAGAGAATGGACAAGAGGTCAGAGGAGCGAGACCGAAAGACGAGCGGCTCACCAGGGCCAAGGAGTGTGGACAGAAGATTGTGATTGATCTCGAGTTCTCTCACCTCATGACGCCCTCTGAGACCCACAGCCTCGTTCAACAGATTATGTATTGTTATGCGGTGAATGGGAGGAGTAGGGAGCCGTGTCATCTGTGGCTGACTGGGTGTAAAGGAGAGATGGGTACGCAGTTGCGCAGGCTGCCGGGGTTTGATAAGTGGAGTGTTGAGAGGGAAGATGGGTCCTACATTGAGGCTTTGGAGAGTGAGAAGAACAATCTGGTGTATCTGACGGCTGATTCGGAGAATGTGGTGGATGATCTTGATCGGAGCAAGATATATATTATTGGGGGATTGGTGGATCGGAATAGGTGGAAAGGAATTACAATGAAGAAAGCAGAGGAGCAGGGAATCCAAACTGCGAAGCTCCCCATCGGGAAGTACTTGAACATGTGCAGTTCCCAGGTCCTGACTGTGAATCAAGTGGTTGAGATTCTCCTCAAGTACTTGGAAACCAAAGATTGGAAGGCTTCCTTCTTCCAAGTGATTCCACAGCGAAAACGATTGCAAGCAGCTGATGATTCATCAGAGGAACCTCAACAACAGAAAGTAGTAGGAAGGGGAAAAAGTGAAGAGAAAGATGATGATCAATATGAAAGCAAAAAGCAGTGTGCTAATGACCCTTCTTCCTTGGAAGATGTGACTGCTGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

tRNA_m1G_MT

Protein Analysis

323

Amino Acids

36.21

Weight (kDa)

4.72

Isoelectric Point (pI)

57.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012259)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47680
fragaria_vesca	FvH4_1g24140 FvH4_1g24140
malus_domestica	MD10G1339200.v1.1
prunus_persica	Prupe.4G003700_v2.0.a1 Prupe.4G003700_v2.0.a1 Prupe.4G003700_v2.0.a1 Prupe.4G003700_v2.0.a1 Prupe.4G003700_v2.0.a1
pyrus_communis	pycom10g28880
rosa_chinensis	RchiOBHm_Chr2g0120371
rosa_laevigata	RLG00000018553
rosa_roxburghii	Rroxscaffold_2G00123460
rosa_rugosa	Rorug02G0229100
rosa_samantha	Rh2AG285100 Rh2BG296200 Rh2CG273900 Rh2DG310100
rosa_wichuraiana	Rw2G022880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	455
AccB7I	CCANNNNNTGG	1 cut(s)	780
AccBSI	CCGCTC	2 cut(s)	131, 265
AciI	CCGC	5 cut(s)	84, 131, 137, 265, 380
AclWI	GGATC	1 cut(s)	627
AcyI	GRCGYC	1 cut(s)	332
AfaI	GTAC	3 cut(s)	445, 701, 764
AfiI	CCNNNNNNNGG	2 cut(s)	47, 780
AflIII	ACRYGT	1 cut(s)	708
AgsI	TTSAA	4 cut(s)	56, 188, 359, 706
AhdI	GACNNNNNGTC	1 cut(s)	236
AjnI	CCWGG	4 cut(s)	97, 201, 272, 720
AluBI	AGCT	4 cut(s)	166, 211, 685, 833
AluI	AGCT	4 cut(s)	166, 211, 685, 833
Alw21I	GWGCWC	1 cut(s)	112
Alw26I	GTCTC	3 cut(s)	147, 244, 335
AlwI	GGATC	1 cut(s)	627
AlwNI	CAGNNNCTG	1 cut(s)	727
Ama87I	CYCGRG	1 cut(s)	311
AoxI	GGCC	2 cut(s)	94, 276
ApeKI	GCWGC	4 cut(s)	59, 460, 830, 965
ArsI	GACNNNNNNTTYG	2 cut(s)	541, 573
AspLEI	GCGC	1 cut(s)	456
AspS9I	GGNCC	4 cut(s)	95, 276, 501, 724
AsuC2I	CCSGG	1 cut(s)	465
AsuHPI	GGTGA	3 cut(s)	262, 314, 394
AvaI	CYCGRG	1 cut(s)	311
AvaII	GGWCC	2 cut(s)	501, 724
BaeGI	GKGCMC	1 cut(s)	41
BbsI	GAAGAC	1 cut(s)	181
Bbv12I	GWGCWC	1 cut(s)	112
BbvI	GCAGC	4 cut(s)	71, 447, 842, 952
BccI	CCATC	3 cut(s)	433, 491, 698
BceAI	ACGGC	2 cut(s)	388, 567
BciT130I	CCWGG	4 cut(s)	99, 203, 274, 722
BclI	TGATCA	1 cut(s)	904
BcnI	CCSGG	1 cut(s)	465
BcoDI	GTCTC	3 cut(s)	147, 244, 335
BisI	GCNGC	5 cut(s)	60, 266, 461, 831, 966
BlsI	GCNGC	5 cut(s)	61, 267, 462, 832, 967
BmcAI	AGTACT	2 cut(s)	701, 764
Bme1390I	CCNGG	5 cut(s)	99, 203, 274, 465, 722
Bme18I	GGWCC	2 cut(s)	501, 724
BmeRI	GACNNNNNGTC	1 cut(s)	236
BmeT110I	CYCGRG	1 cut(s)	311
BmgT120I	GGNCC	4 cut(s)	95, 276, 501, 724
BmiI	GGNNCC	3 cut(s)	402, 502, 852
BmrFI	CCNGG	5 cut(s)	99, 203, 274, 465, 722
BmrI	ACTGGG	1 cut(s)	432
BmuI	ACTGGG	1 cut(s)	432
BpiI	GAAGAC	1 cut(s)	181
BpuEI	CTTGAG	3 cut(s)	188, 233, 743
BpuMI	CCSGG	1 cut(s)	465
BsaBI	GATNNNNATC	2 cut(s)	582, 903
BsaHI	GRCGYC	1 cut(s)	332
BsaI	GGTCTC	2 cut(s)	244, 335
BsaJI	CCNNGG	6 cut(s)	97, 273, 279, 464, 720, 948
Bsc4I	CCNNNNNNNGG	2 cut(s)	47, 780
Bse1I	ACTGG	1 cut(s)	427
Bse8I	GATNNNNATC	2 cut(s)	582, 903
BseBI	CCWGG	4 cut(s)	99, 203, 274, 722
BseDI	CCNNGG	6 cut(s)	97, 273, 279, 464, 720, 948
BseGI	GGATG	1 cut(s)	580
BseJI	GATNNNNATC	2 cut(s)	582, 903
BseLI	CCNNNNNNNGG	2 cut(s)	47, 780
BseMII	CTCAG	1 cut(s)	330
BseNI	ACTGG	1 cut(s)	427
BseRI	GAGGAG	5 cut(s)	165, 258, 406, 674, 746
BseSI	GKGCMC	1 cut(s)	41
BseXI	GCAGC	4 cut(s)	71, 447, 842, 952
BsgI	GTGCAG	1 cut(s)	733
BshFI	GGCC	2 cut(s)	96, 278
BsiHKAI	GWGCWC	1 cut(s)	112
BsiHKCI	CYCGRG	1 cut(s)	311
BsiSI	CCGG	1 cut(s)	464
BslI	CCNNNNNNNGG	2 cut(s)	47, 780
BsmAI	GTCTC	3 cut(s)	147, 244, 335
BsnI	GGCC	2 cut(s)	96, 278
Bso31I	GGTCTC	2 cut(s)	244, 335
BsoBI	CYCGRG	1 cut(s)	311
Bsp1286I	GDGCHC	2 cut(s)	41, 112
Bsp143I	GATC	5 cut(s)	307, 577, 583, 619, 904
BspACI	CCGC	5 cut(s)	84, 131, 137, 265, 380
BspANI	GGCC	2 cut(s)	96, 278
BspCNI	CTCAG	1 cut(s)	331
BspHI	TCATGA	1 cut(s)	327
BspLI	GGNNCC	3 cut(s)	402, 502, 852
BspPI	GGATC	1 cut(s)	627
BspQI	GCTCTTC	1 cut(s)	201
BspTNI	GGTCTC	2 cut(s)	244, 335
BsrBI	CCGCTC	2 cut(s)	131, 265
BsrI	ACTGG	1 cut(s)	427
BssECI	CCNNGG	6 cut(s)	97, 273, 279, 464, 720, 948
BssMI	GATC	5 cut(s)	307, 577, 583, 619, 904
BssNI	GRCGYC	1 cut(s)	332
BssT1I	CCWWGG	2 cut(s)	279, 948
Bst2UI	CCWGG	4 cut(s)	99, 203, 274, 722
Bst4CI	ACNGT	1 cut(s)	733
Bst6I	CTCTTC	4 cut(s)	27, 111, 201, 885
BstACI	GRCGYC	1 cut(s)	332
BstC8I	GCNNGC	3 cut(s)	164, 458, 828
BstDEI	CTNAG	1 cut(s)	339
BstF5I	GGATG	1 cut(s)	580
BstHHI	GCGC	1 cut(s)	456
BstKTI	GATC	5 cut(s)	310, 580, 586, 622, 907
BstMAI	GTCTC	3 cut(s)	147, 244, 335
BstMBI	GATC	5 cut(s)	307, 577, 583, 619, 904
BstMWI	GCNNNNNNNGC	2 cut(s)	81, 460
BstNI	CCWGG	4 cut(s)	99, 203, 274, 722
BstNSI	RCATGY	1 cut(s)	712
BstSCI	CCNGG	5 cut(s)	97, 201, 272, 463, 720
BstSLI	GKGCMC	1 cut(s)	41
BstV1I	GCAGC	4 cut(s)	71, 447, 842, 952
BstV2I	GAAGAC	1 cut(s)	181
BsuRI	GGCC	2 cut(s)	96, 278
BtsCI	GGATG	1 cut(s)	580
BtsI	GCAGTG	2 cut(s)	25, 932
BtsIMutI	CAGTG	2 cut(s)	25, 932
Cac8I	GCNNGC	3 cut(s)	164, 458, 828
CaiI	CAGNNNCTG	1 cut(s)	727
CciI	TCATGA	1 cut(s)	327
CfoI	GCGC	1 cut(s)	456
Cfr13I	GGNCC	4 cut(s)	95, 276, 501, 724
CseI	GACGC	1 cut(s)	340
Csp6I	GTAC	3 cut(s)	444, 700, 763
CspCI	CAANNNNNGTGG	2 cut(s)	268, 303
CviAII	CATG	2 cut(s)	328, 709
CviQI	GTAC	3 cut(s)	444, 700, 763
DdeI	CTNAG	1 cut(s)	339
DpnI	GATC	5 cut(s)	309, 579, 585, 621, 906
DpnII	GATC	5 cut(s)	307, 577, 583, 619, 904
DriI	GACNNNNNGTC	1 cut(s)	236
Eam1104I	CTCTTC	4 cut(s)	27, 111, 201, 885
Eam1105I	GACNNNNNGTC	1 cut(s)	236
EarI	CTCTTC	4 cut(s)	27, 111, 201, 885
EciI	GGCGGA	1 cut(s)	99
Eco130I	CCWWGG	2 cut(s)	279, 948
Eco31I	GGTCTC	2 cut(s)	244, 335
Eco47I	GGWCC	2 cut(s)	501, 724
Eco88I	CYCGRG	1 cut(s)	311
EcoO109I	RGGNCCY	2 cut(s)	501, 724
EcoRII	CCWGG	4 cut(s)	97, 201, 272, 720
EcoT14I	CCWWGG	2 cut(s)	279, 948
ErhI	CCWWGG	2 cut(s)	279, 948
FaeI	CATG	2 cut(s)	331, 712
FaiI	YATR	7 cut(s)	329, 368, 378, 598, 600, 710, 912
FalI	AAGNNNNNCTT	2 cut(s)	776, 808
FatI	CATG	2 cut(s)	327, 708
FbaI	TGATCA	1 cut(s)	904
Fnu4HI	GCNGC	5 cut(s)	60, 266, 461, 831, 966
FokI	GGATG	1 cut(s)	587
Fsp4HI	GCNGC	5 cut(s)	60, 266, 461, 831, 966
FspI	TGCGCA	1 cut(s)	455
GlaI	GCGC	1 cut(s)	455
GluI	GCNGC	5 cut(s)	60, 266, 461, 831, 966
HaeIII	GGCC	2 cut(s)	96, 278
HapII	CCGG	1 cut(s)	464
HgaI	GACGC	1 cut(s)	340
HhaI	GCGC	1 cut(s)	456
Hin1I	GRCGYC	1 cut(s)	332
Hin1II	CATG	2 cut(s)	331, 712
Hin6I	GCGC	1 cut(s)	454
HinP1I	GCGC	1 cut(s)	454
HinfI	GANTC	8 cut(s)	155, 198, 557, 669, 736, 751, 805, 839
HpaII	CCGG	1 cut(s)	464
HphI	GGTGA	3 cut(s)	262, 314, 394
Hpy166II	GTNNAC	1 cut(s)	290
Hpy188I	TCNGA	8 cut(s)	7, 242, 340, 549, 562, 588, 624, 847
Hpy188III	TCNNGA	5 cut(s)	311, 328, 581, 694, 727
Hpy8I	GTNNAC	1 cut(s)	290
HpyAV	CCTTC	9 cut(s)	41, 74, 86, 134, 212, 778, 802, 870, 951
HpyCH4III	ACNGT	1 cut(s)	733
HpyCH4V	TGCA	2 cut(s)	714, 826
HpyF10VI	GCNNNNNNNGC	2 cut(s)	81, 460
HpyF3I	CTNAG	1 cut(s)	339
Hsp92I	GRCGYC	1 cut(s)	332
Hsp92II	CATG	2 cut(s)	331, 712
HspAI	GCGC	1 cut(s)	454
Ksp22I	TGATCA	1 cut(s)	904
Kzo9I	GATC	5 cut(s)	307, 577, 583, 619, 904
LguI	GCTCTTC	1 cut(s)	201
LmnI	GCTCC	5 cut(s)	245, 400, 588, 661, 690
Lsp1109I	GCAGC	4 cut(s)	71, 447, 842, 952
MaeIII	GTNAC	1 cut(s)	958
MalI	GATC	5 cut(s)	309, 579, 585, 621, 906
MbiI	CCGCTC	2 cut(s)	131, 265
MboI	GATC	5 cut(s)	307, 577, 583, 619, 904
MhlI	GDGCHC	2 cut(s)	41, 112
MluCI	AATT	1 cut(s)	639
MlyI	GAGTC	2 cut(s)	149, 207
MspA1I	CMGCKG	1 cut(s)	833
MspI	CCGG	1 cut(s)	464
MspR9I	CCNGG	5 cut(s)	99, 203, 274, 465, 722
MvaI	CCWGG	4 cut(s)	99, 203, 274, 722
MwoI	GCNNNNNNNGC	2 cut(s)	81, 460
NciI	CCSGG	1 cut(s)	465
NdeII	GATC	5 cut(s)	307, 577, 583, 619, 904
NlaIII	CATG	2 cut(s)	331, 712
NlaIV	GGNNCC	3 cut(s)	402, 502, 852
NmuCI	GTSAC	1 cut(s)	958
NsbI	TGCGCA	1 cut(s)	455
NspI	RCATGY	1 cut(s)	712
PaeR7I	CTCGAG	1 cut(s)	311
PagI	TCATGA	1 cut(s)	327
PciI	ACATGT	1 cut(s)	708
PciSI	GCTCTTC	1 cut(s)	201
PfeI	GAWTC	6 cut(s)	557, 669, 736, 751, 805, 839
PflMI	CCANNNNNTGG	1 cut(s)	780
PfoI	TCCNGGA	1 cut(s)	201
PkrI	GCNGC	5 cut(s)	61, 267, 462, 832, 967
PleI	GAGTC	2 cut(s)	149, 206
PpsI	GAGTC	2 cut(s)	149, 206
PpuMI	RGGWCCY	2 cut(s)	501, 724
PscI	ACATGT	1 cut(s)	708
Psp5II	RGGWCCY	2 cut(s)	501, 724
Psp6I	CCWGG	4 cut(s)	97, 201, 272, 720
PspGI	CCWGG	4 cut(s)	97, 201, 272, 720
PspN4I	GGNNCC	3 cut(s)	402, 502, 852
PspPI	GGNCC	4 cut(s)	95, 276, 501, 724
PspPPI	RGGWCCY	2 cut(s)	501, 724
PstNI	CAGNNNCTG	1 cut(s)	727
PvuII	CAGCTG	1 cut(s)	833
RsaI	GTAC	3 cut(s)	445, 701, 764
RsaNI	GTAC	3 cut(s)	444, 700, 763
SapI	GCTCTTC	1 cut(s)	201
SatI	GCNGC	5 cut(s)	60, 266, 461, 831, 966
Sau3AI	GATC	5 cut(s)	307, 577, 583, 619, 904
Sau96I	GGNCC	4 cut(s)	95, 276, 501, 724
ScaI	AGTACT	2 cut(s)	701, 764
SchI	GAGTC	2 cut(s)	149, 207
ScrFI	CCNGG	5 cut(s)	99, 203, 274, 465, 722
SduI	GDGCHC	2 cut(s)	41, 112
Sfr274I	CTCGAG	1 cut(s)	311
SinI	GGWCC	2 cut(s)	501, 724
SlaI	CTCGAG	1 cut(s)	311
SmlI	CTYRAG	4 cut(s)	167, 212, 311, 758
SmoI	CTYRAG	4 cut(s)	167, 212, 311, 758
Sse9I	AATT	1 cut(s)	639
SsiI	CCGC	5 cut(s)	84, 131, 137, 265, 380
StyD4I	CCNGG	5 cut(s)	97, 201, 272, 463, 720
StyI	CCWWGG	2 cut(s)	279, 948
TaaI	ACNGT	1 cut(s)	733
TaqI	TCGA	2 cut(s)	30, 312
TaqII	GACCGA	1 cut(s)	268
TasI	AATT	1 cut(s)	639
TatI	WGTACW	2 cut(s)	699, 762
TauI	GCSGC	1 cut(s)	268
TfiI	GAWTC	6 cut(s)	557, 669, 736, 751, 805, 839
TscAI	CASTG	2 cut(s)	25, 932
TseFI	GTSAC	1 cut(s)	958
TseI	GCWGC	4 cut(s)	59, 460, 830, 965
Tsp45I	GTSAC	1 cut(s)	958
TspDTI	ATGAA	3 cut(s)	662, 831, 927
TspRI	CASTG	2 cut(s)	25, 932
Van91I	CCANNNNNTGG	1 cut(s)	780
VpaK11BI	GGWCC	2 cut(s)	501, 724
XceI	RCATGY	1 cut(s)	712
XhoI	CTCGAG	1 cut(s)	311
ZrmI	AGTACT	2 cut(s)	701, 764

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.