Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0008874

Physical Location & Seq

Genomic Coordinates Forward (+)

9925222 .. 9927436

Gene Structure 2215 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1112100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

ATGGCGTGTTGTCAGTGCCATGTGGACCCCGCACCGAATCCTTTAAAATCTCCCAAACAGCGCCAAACCCAAAACCCTTCCCTTCTCTCTCTTGGAGGAAAAGAAAAGAGAGAAAAAGAAAGAGACCGGAAAGAAGAACGATCCCCTCCTAATCTCTCTCCCTCCCTCTGGGCACGGATCAGTGAACGGTGTGTGATGGCAAATGATAAGTTGAAACATGAACGAGAGCCCCTTGGCTCTACTTCACCATTACAAAGGATCAAAGAAAGTGAAATCTCGGTTCAAAGTAATGAACCTAATGATGTGTCTAACTTCGTGGGGAACCTTAGTAATAGTAGTGCTGCTGGAGCTGATGATATAACCATTCCAAGTATGACGATGCCGTTTTCACTTTTTCCTTTTGAAGACATTGATGGAACGAATAACCCTTATGCCATGGAAATGCCGCTGACTGATATTAATTGGATGACTGATCTCACTCTACCATTCAGCAACCCTCAGGATCCAATGTTTGACTATGATTCTGTATATGGGAAGGGTAGAAAACCGGTCCAACATAGGTCAGATTCAAATTTTATCGGTTTGGATGTGAAGCAAACTCATCGTCCTCTTGATTATTCAATGCCTCCTGCTAAAGTGGTCAGTGCTATGTTTGATGCGGACGTTAAACCTCCTGTTGACAGGAAATTAGTAACTGCTAATGGAAACTTTGCTGCAGCCTTATATGGTATACATCAGAATGAAGAACTAAATAGAAATATAGGCAGGCCTCAGCTATTTAGAAATTTCATAAGCGATGGAGTTAGCACCCCTGTGGCAGGCCATACCATAGATGGCTTAGGCATGGCAAAAAATAACAATTTCATGACAACCAAAGTTCAAGAGGATTGCCCAGAAAACCTTGATGTGAGTTTCCTAACCCTGGGGTTTGAGCGGAAGACTGAGGATTTATCTAAATCTATAAGATCAGAAACAAATGTTGCTAATAATTTTGGAAGGGATGCCCTTCCTCAACCAAATACTTTTCTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

344

Amino Acids

38.23

Weight (kDa)

5.5

Isoelectric Point (pI)

48.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008874)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g28290 FvH4_6g28290 FvH4_6g28290 FvH4_6g28290 FvH4_6g28290
malus_domestica	MD11G1112100.v1.1 MD11G1112200.v1.1 MD17G1226300.v1.1
prunus_persica	Prupe.3G103500_v2.0.a1
pyrus_communis	pycom17g22970
rosa_chinensis	RchiOBHm_Chr2g0132351
rosa_laevigata	RLG00000019248
rosa_multiflora	Rmu_co8101556.1_g000001 Rmu_sc0000781.1_g000004 Rmu_sc0002795.1_g000002
rosa_roxburghii	Rroxscaffold_2G00112140
rosa_rugosa	Rorug02G0303800 Rorug02G0303800
rosa_samantha	Rh2AG356900 Rh2BG363400 Rh2CG340300 Rh2DG380000
rosa_wichuraiana	Rw2G029020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	934
AccI	GTMKAC	1 cut(s)	730
AciI	CCGC	4 cut(s)	30, 446, 659, 934
AclWI	GGATC	5 cut(s)	135, 185, 266, 497, 510
AcsI	RAATTY	2 cut(s)	571, 784
AfiI	CCNNNNNNNGG	3 cut(s)	168, 818, 922
AgeI	ACCGGT	1 cut(s)	547
AgsI	TTSAA	6 cut(s)	214, 284, 404, 570, 621, 881
AjnI	CCWGG	1 cut(s)	921
AleI	CACNNNNGTG	1 cut(s)	812
AluBI	AGCT	2 cut(s)	350, 775
AluI	AGCT	2 cut(s)	350, 775
Alw26I	GTCTC	1 cut(s)	117
AlwI	GGATC	5 cut(s)	135, 185, 266, 497, 510
AoxI	GGCC	2 cut(s)	767, 820
ApeKI	GCWGC	3 cut(s)	341, 713, 716
ApoI	RAATTY	2 cut(s)	571, 784
ArsI	GACNNNNNNTTYG	2 cut(s)	589, 621
AseI	ATTAAT	1 cut(s)	459
AsiGI	ACCGGT	1 cut(s)	547
AspLEI	GCGC	1 cut(s)	63
AspS9I	GGNCC	2 cut(s)	25, 550
AsuHPI	GGTGA	1 cut(s)	237
AvaII	GGWCC	2 cut(s)	25, 550
AxyI	CCTNAGG	1 cut(s)	498
BaeGI	GKGCMC	1 cut(s)	175
BamHI	GGATCC	1 cut(s)	502
BanII	GRGCYC	1 cut(s)	231
BbsI	GAAGAC	2 cut(s)	411, 944
BbvCI	CCTCAGC	1 cut(s)	771
BbvI	GCAGC	3 cut(s)	328, 700, 728
BccI	CCATC	4 cut(s)	190, 407, 791, 827
BceAI	ACGGC	1 cut(s)	367
BcgI	CGANNNNNNTGC	2 cut(s)	584, 618
BciT130I	CCWGG	1 cut(s)	923
BcoDI	GTCTC	1 cut(s)	117
BfmI	CTRYAG	2 cut(s)	714, 1028
BfoI	RGCGCY	1 cut(s)	64
BisI	GCNGC	4 cut(s)	342, 446, 714, 717
BlsI	GCNGC	4 cut(s)	343, 447, 715, 718
Bme1390I	CCNGG	1 cut(s)	923
Bme18I	GGWCC	2 cut(s)	25, 550
BmgT120I	GGNCC	2 cut(s)	25, 550
BmiI	GGNNCC	3 cut(s)	27, 323, 504
BmrFI	CCNGG	1 cut(s)	923
BmsI	GCATC	3 cut(s)	369, 646, 991
BpiI	GAAGAC	2 cut(s)	411, 944
BpmI	CTGGAG	1 cut(s)	366
Bpu10I	CCTNAGC	2 cut(s)	771, 838
BsaI	GGTCTC	1 cut(s)	117
BsaJI	CCNNGG	4 cut(s)	232, 435, 921, 922
BsaWI	WCCGGW	2 cut(s)	126, 547
Bsc4I	CCNNNNNNNGG	3 cut(s)	168, 818, 922
Bse118I	RCCGGY	1 cut(s)	547
Bse21I	CCTNAGG	1 cut(s)	498
BseBI	CCWGG	1 cut(s)	923
BseDI	CCNNGG	4 cut(s)	232, 435, 921, 922
BseGI	GGATG	3 cut(s)	471, 592, 1006
BseLI	CCNNNNNNNGG	3 cut(s)	168, 818, 922
BseMII	CTCAG	3 cut(s)	512, 785, 933
BseSI	GKGCMC	1 cut(s)	175
BseXI	GCAGC	3 cut(s)	328, 700, 728
BshFI	GGCC	2 cut(s)	769, 822
BshTI	ACCGGT	1 cut(s)	547
BsiSI	CCGG	2 cut(s)	127, 548
BslI	CCNNNNNNNGG	3 cut(s)	168, 818, 922
BsmAI	GTCTC	1 cut(s)	117
BsnI	GGCC	2 cut(s)	769, 822
Bso31I	GGTCTC	1 cut(s)	117
Bsp1286I	GDGCHC	2 cut(s)	175, 231
Bsp143I	GATC	6 cut(s)	140, 177, 258, 472, 502, 965
Bsp19I	CCATGG	1 cut(s)	435
BspACI	CCGC	4 cut(s)	30, 446, 659, 934
BspANI	GGCC	2 cut(s)	769, 822
BspCNI	CTCAG	3 cut(s)	511, 784, 934
BspHI	TCATGA	1 cut(s)	864
BspLI	GGNNCC	3 cut(s)	27, 323, 504
BspMAI	CTGCAG	1 cut(s)	718
BspPI	GGATC	5 cut(s)	135, 185, 266, 497, 510
BspTNI	GGTCTC	1 cut(s)	117
BsrBI	CCGCTC	1 cut(s)	934
BsrFI	RCCGGY	1 cut(s)	547
BssAI	RCCGGY	1 cut(s)	547
BssECI	CCNNGG	4 cut(s)	232, 435, 921, 922
BssMI	GATC	6 cut(s)	140, 177, 258, 472, 502, 965
BssNAI	GTATAC	1 cut(s)	731
BssT1I	CCWWGG	2 cut(s)	232, 435
Bst1107I	GTATAC	1 cut(s)	731
Bst2UI	CCWGG	1 cut(s)	923
Bst4CI	ACNGT	1 cut(s)	189
BstC8I	GCNNGC	2 cut(s)	767, 820
BstDEI	CTNAG	5 cut(s)	326, 498, 771, 838, 942
BstDSI	CCRYGG	1 cut(s)	435
BstENI	CCTNNNNNAGG	1 cut(s)	816
BstF5I	GGATG	3 cut(s)	471, 592, 1006
BstH2I	RGCGCY	1 cut(s)	64
BstHHI	GCGC	1 cut(s)	63
BstKTI	GATC	6 cut(s)	143, 180, 261, 475, 505, 968
BstMAI	GTCTC	1 cut(s)	117
BstMBI	GATC	6 cut(s)	140, 177, 258, 472, 502, 965
BstMWI	GCNNNNNNNGC	1 cut(s)	347
BstNI	CCWGG	1 cut(s)	923
BstSCI	CCNGG	1 cut(s)	921
BstSFI	CTRYAG	2 cut(s)	714, 1028
BstSLI	GKGCMC	1 cut(s)	175
BstV1I	GCAGC	3 cut(s)	328, 700, 728
BstV2I	GAAGAC	2 cut(s)	411, 944
BstX2I	RGATCY	1 cut(s)	502
BstYI	RGATCY	1 cut(s)	502
BstZ17I	GTATAC	1 cut(s)	731
Bsu36I	CCTNAGG	1 cut(s)	498
BsuRI	GGCC	2 cut(s)	769, 822
BtgI	CCRYGG	1 cut(s)	435
BtgZI	GCGATG	1 cut(s)	810
BtsCI	GGATG	3 cut(s)	471, 592, 1006
BtsIMutI	CAGTG	3 cut(s)	20, 187, 649
Cac8I	GCNNGC	2 cut(s)	767, 820
CciI	TCATGA	1 cut(s)	864
CfoI	GCGC	1 cut(s)	63
Cfr10I	RCCGGY	1 cut(s)	547
Cfr13I	GGNCC	2 cut(s)	25, 550
CspAI	ACCGGT	1 cut(s)	547
CviAII	CATG	5 cut(s)	20, 218, 436, 844, 865
CviJI	RGCY	8 cut(s)	229, 237, 350, 719, 769, 775, 822, 837
CviKI_1	RGCY	8 cut(s)	229, 237, 350, 719, 769, 775, 822, 837
DdeI	CTNAG	5 cut(s)	326, 498, 771, 838, 942
DpnI	GATC	6 cut(s)	142, 179, 260, 474, 504, 967
DpnII	GATC	6 cut(s)	140, 177, 258, 472, 502, 965
DraI	TTTAAA	1 cut(s)	45
Eco130I	CCWWGG	2 cut(s)	232, 435
Eco147I	AGGCCT	1 cut(s)	769
Eco24I	GRGCYC	1 cut(s)	231
Eco31I	GGTCTC	1 cut(s)	117
Eco47I	GGWCC	2 cut(s)	25, 550
Eco81I	CCTNAGG	1 cut(s)	498
EcoNI	CCTNNNNNAGG	1 cut(s)	816
EcoRII	CCWGG	1 cut(s)	921
EcoT14I	CCWWGG	2 cut(s)	232, 435
EcoT38I	GRGCYC	1 cut(s)	231
ErhI	CCWWGG	2 cut(s)	232, 435
FaeI	CATG	5 cut(s)	23, 221, 439, 847, 868
FatI	CATG	5 cut(s)	19, 217, 435, 843, 864
FauI	CCCGC	1 cut(s)	37
FblI	GTMKAC	1 cut(s)	730
Fnu4HI	GCNGC	4 cut(s)	342, 446, 714, 717
FokI	GGATG	3 cut(s)	478, 599, 1013
FriOI	GRGCYC	1 cut(s)	231
Fsp4HI	GCNGC	4 cut(s)	342, 446, 714, 717
GlaI	GCGC	1 cut(s)	62
GluI	GCNGC	4 cut(s)	342, 446, 714, 717
GsuI	CTGGAG	1 cut(s)	366
HaeII	RGCGCY	1 cut(s)	64
HaeIII	GGCC	2 cut(s)	769, 822
HapII	CCGG	2 cut(s)	127, 548
HhaI	GCGC	1 cut(s)	63
Hin1II	CATG	5 cut(s)	23, 221, 439, 847, 868
Hin6I	GCGC	1 cut(s)	61
HinP1I	GCGC	1 cut(s)	61
HincII	GTYRAC	1 cut(s)	679
HindII	GTYRAC	1 cut(s)	679
HinfI	GANTC	3 cut(s)	37, 521, 566
HpaII	CCGG	2 cut(s)	127, 548
HphI	GGTGA	1 cut(s)	237
Hpy166II	GTNNAC	4 cut(s)	25, 185, 679, 731
Hpy188I	TCNGA	3 cut(s)	565, 738, 970
Hpy188III	TCNNGA	4 cut(s)	500, 611, 865, 881
Hpy8I	GTNNAC	4 cut(s)	25, 185, 679, 731
HpyAV	CCTTC	5 cut(s)	87, 92, 529, 990, 1016
HpyCH4III	ACNGT	1 cut(s)	189
HpyCH4IV	ACGT	1 cut(s)	663
HpyCH4V	TGCA	1 cut(s)	716
HpyF10VI	GCNNNNNNNGC	1 cut(s)	347
HpyF3I	CTNAG	5 cut(s)	326, 498, 771, 838, 942
HpySE526I	ACGT	1 cut(s)	663
Hsp92II	CATG	5 cut(s)	23, 221, 439, 847, 868
HspAI	GCGC	1 cut(s)	61
Kzo9I	GATC	6 cut(s)	140, 177, 258, 472, 502, 965
LmnI	GCTCC	1 cut(s)	347
Lsp1109I	GCAGC	3 cut(s)	328, 700, 728
LweI	GCATC	3 cut(s)	369, 646, 991
MaeII	ACGT	1 cut(s)	663
MaeIII	GTNAC	1 cut(s)	691
MalI	GATC	6 cut(s)	142, 179, 260, 474, 504, 967
MbiI	CCGCTC	1 cut(s)	934
MboI	GATC	6 cut(s)	140, 177, 258, 472, 502, 965
MboII	GAAGA	4 cut(s)	146, 416, 755, 949
MflI	RGATCY	1 cut(s)	502
MhlI	GDGCHC	2 cut(s)	175, 231
MluCI	AATT	6 cut(s)	460, 571, 686, 784, 859, 988
MmeI	TCCRAC	1 cut(s)	577
MseI	TTAA	3 cut(s)	44, 459, 666
MslI	CAYNNNNRTG	3 cut(s)	440, 738, 812
MspA1I	CMGCKG	1 cut(s)	448
MspI	CCGG	2 cut(s)	127, 548
MspR9I	CCNGG	1 cut(s)	923
MvaI	CCWGG	1 cut(s)	923
MwoI	GCNNNNNNNGC	1 cut(s)	347
NcoI	CCATGG	1 cut(s)	435
NdeII	GATC	6 cut(s)	140, 177, 258, 472, 502, 965
NlaIII	CATG	5 cut(s)	23, 221, 439, 847, 868
NlaIV	GGNNCC	3 cut(s)	27, 323, 504
OliI	CACNNNNGTG	1 cut(s)	812
PagI	TCATGA	1 cut(s)	864
PasI	CCCWGGG	1 cut(s)	922
PceI	AGGCCT	1 cut(s)	769
PfeI	GAWTC	3 cut(s)	37, 521, 566
PinAI	ACCGGT	1 cut(s)	547
PkrI	GCNGC	4 cut(s)	343, 447, 715, 718
PshBI	ATTAAT	1 cut(s)	459
Psp6I	CCWGG	1 cut(s)	921
PspGI	CCWGG	1 cut(s)	921
PspN4I	GGNNCC	3 cut(s)	27, 323, 504
PspPI	GGNCC	2 cut(s)	25, 550
PstI	CTGCAG	1 cut(s)	718
PsuI	RGATCY	1 cut(s)	502
RseI	CAYNNNNRTG	3 cut(s)	440, 738, 812
SaqAI	TTAA	3 cut(s)	44, 459, 666
SatI	GCNGC	4 cut(s)	342, 446, 714, 717
Sau3AI	GATC	6 cut(s)	140, 177, 258, 472, 502, 965
Sau96I	GGNCC	2 cut(s)	25, 550
ScrFI	CCNGG	1 cut(s)	923
SduI	GDGCHC	2 cut(s)	175, 231
SetI	ASST	8 cut(s)	298, 327, 352, 563, 666, 673, 777, 903
SfaNI	GCATC	3 cut(s)	369, 646, 991
SfcI	CTRYAG	2 cut(s)	714, 1028
SinI	GGWCC	2 cut(s)	25, 550
SmiMI	CAYNNNNRTG	3 cut(s)	440, 738, 812
Sse9I	AATT	6 cut(s)	460, 571, 686, 784, 859, 988
SseBI	AGGCCT	1 cut(s)	769
SsiI	CCGC	4 cut(s)	30, 446, 659, 934
StuI	AGGCCT	1 cut(s)	769
StyD4I	CCNGG	1 cut(s)	921
StyI	CCWWGG	2 cut(s)	232, 435
TaaI	ACNGT	1 cut(s)	189
TaiI	ACGT	1 cut(s)	666
TasI	AATT	6 cut(s)	460, 571, 686, 784, 859, 988
TauI	GCSGC	1 cut(s)	448
TfiI	GAWTC	3 cut(s)	37, 521, 566
Tru1I	TTAA	3 cut(s)	44, 459, 666
Tru9I	TTAA	3 cut(s)	44, 459, 666
TscAI	CASTG	3 cut(s)	20, 187, 649
TseI	GCWGC	3 cut(s)	341, 713, 716
TspDTI	ATGAA	5 cut(s)	234, 306, 756, 778, 853
TspGWI	ACGGA	1 cut(s)	190
TspRI	CASTG	3 cut(s)	20, 187, 649
VpaK11BI	GGWCC	2 cut(s)	25, 550
VspI	ATTAAT	1 cut(s)	459
XagI	CCTNNNNNAGG	1 cut(s)	816
XapI	RAATTY	2 cut(s)	571, 784
XcmI	CCANNNNNNNNNTGG	1 cut(s)	830
XmiI	GTMKAC	1 cut(s)	730

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.