Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000781.1

Orthogroup ID

OG0008874

Physical Location & Seq

Genomic Coordinates Reverse (-)

38127 .. 40493

Gene Structure 2367 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000781.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1587 bp

atgatggttgcaggtaatccttatcaacctgaagtcgttagtgctgttctttcttctacataccatcctggatctgtgataaccggtcaagaacttccaactaccaaagttaatagagctattcaacctcctagagcttttgttggaacatctgttaagaggggtgcagctgaaatctcagcatgtagttaccaagctcaacccacattttcaggtgaagaaattccagctaccaaagttagtaagacttctcagtgttcgagggcttttgttggaacatctgttaagaggggtgcagcagaaacattcacaggtacttcccatgctgatcccagcaaggcaagaagaactcaatattccactggtctaactgcagaagctccattcctggaagtttcttcactccaaatcttatcccaggatgcttctttctcaagtcgagatcatacttctccatctctcccacatcaggccaaaagcacaccactgaaccagccccaatcccagaccaggtctgctcttccgcccgaagtcaaaggtctcccatccctgacccggaatgctccctctctccaactccaagccaagagtgctccatcattgcctccttttcccgagaccgcctcatctctcgcacccgaagtcagaagtattccatcactgtcatcgctatcccagacttcaccctctctcccactccaagctaaaagtactccattactcccattcctgttccagactacttcatctctcgcacctcaagtcaaaggcatttcatcacttccatccctatcccagactgctccttctatccaaacccaagccaagagtataccctcattaccacccacaacctcttctataccaaccaaaaccagaaggaatgtattacttcgacaccaatcccagacggctcactctctcctaccccaagccaaaactactacatcactcccgcttccatatttgacggttccatctcttttacccatcaccagtactacatcacccccaaccttatcccagaatggtccctcttacccacctcagcctcaaaatgcttctccacttccatcacaaaagacaactggccgaccactgccaccaaaatccttgagaggttcatctcttccccaaaaacctcggactgctttgccacccaggtctcatattccttcatcactgtcatcaaaatttagtgctccaccaccaatcccaccccaacctcagactgcttccccagttccacggaaatatatagctccacctttctcaccccagactactctaccagtcacacaaaaagttaatgctccacctctgccacctcaacaccagactgatccagtactccatataaaatggaatgctgctgatgaaactcaactaattgggcacaagtgcttgatatgcaagagggatcttgccttcacaccagacggccctgtttctgtgccacctattgcaccagttgttgctgttctaccgtgtggccacaccttccatgaccattgcttgcagctcatcaccccggaagatgaaaataaaagtcctccatgcattccttgtgccattggcgagagttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

528

Amino Acids

55.85

Weight (kDa)

9.8

Isoelectric Point (pI)

71.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008874)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g28290 FvH4_6g28290 FvH4_6g28290 FvH4_6g28290 FvH4_6g28290
malus_domestica	MD11G1112100.v1.1 MD11G1112200.v1.1 MD17G1226300.v1.1
prunus_persica	Prupe.3G103500_v2.0.a1
pyrus_communis	pycom17g22970
rosa_chinensis	RchiOBHm_Chr2g0132351
rosa_laevigata	RLG00000019248
rosa_multiflora	Rmu_co8101556.1_g000001 Rmu_sc0000781.1_g000004 Rmu_sc0002795.1_g000002
rosa_roxburghii	Rroxscaffold_2G00112140
rosa_rugosa	Rorug02G0303800 Rorug02G0303800
rosa_samantha	Rh2AG356900 Rh2BG363400 Rh2CG340300 Rh2DG380000
rosa_wichuraiana	Rw2G029020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	2
AccI	GTMKAC	1 cut(s)	832
AciI	CCGC	3 cut(s)	524, 621, 956
AclWI	GGATC	4 cut(s)	79, 323, 1337, 1428
AcoI	YGGCCR	2 cut(s)	1090, 1492
AcsI	RAATTY	2 cut(s)	222, 1193
AcuI	CTGAAG	1 cut(s)	51
AfaI	GTAC	4 cut(s)	316, 712, 1000, 1350
AfiI	CCNNNNNNNGG	3 cut(s)	469, 510, 555
AgeI	ACCGGT	1 cut(s)	83
AgsI	TTSAA	1 cut(s)	125
AjnI	CCWGG	5 cut(s)	67, 387, 417, 509, 1160
AluBI	AGCT	9 cut(s)	119, 137, 170, 197, 230, 380, 704, 1262, 1522
AluI	AGCT	9 cut(s)	119, 137, 170, 197, 230, 380, 704, 1262, 1522
Alw21I	GWGCWC	2 cut(s)	595, 1204
Alw26I	GTCTC	3 cut(s)	545, 611, 1170
AlwI	GGATC	4 cut(s)	79, 323, 1337, 1428
Ama87I	CYCGRG	1 cut(s)	614
AoxI	GGCC	4 cut(s)	471, 1090, 1441, 1492
ApeKI	GCWGC	4 cut(s)	167, 296, 1370, 1519
ApoI	RAATTY	2 cut(s)	222, 1193
AsiGI	ACCGGT	1 cut(s)	83
Asp700I	GAANNNNTTC	1 cut(s)	222
AspS9I	GGNCC	2 cut(s)	1031, 1442
AsuC2I	CCSGG	2 cut(s)	556, 1532
AsuHPI	GGTGA	6 cut(s)	227, 675, 985, 999, 1266, 1519
AvaI	CYCGRG	1 cut(s)	614
AvaII	GGWCC	1 cut(s)	1031
BaeGI	GKGCMC	1 cut(s)	1398
BalI	TGGCCA	1 cut(s)	1494
Bbv12I	GWGCWC	2 cut(s)	595, 1204
BbvCI	CCTCAGC	1 cut(s)	1047
BbvI	GCAGC	4 cut(s)	179, 308, 1357, 1531
BccI	CCATC	9 cut(s)	72, 463, 553, 604, 664, 793, 985, 998, 1081
BceAI	ACGGC	2 cut(s)	927, 1456
BciT130I	CCWGG	5 cut(s)	69, 389, 419, 511, 1162
BcnI	CCSGG	2 cut(s)	556, 1532
BcoDI	GTCTC	3 cut(s)	545, 611, 1170
BfaI	CTAG	1 cut(s)	132
BfmI	CTRYAG	1 cut(s)	372
BfuAI	ACCTGC	1 cut(s)	2
BisI	GCNGC	4 cut(s)	168, 297, 1371, 1520
BlsI	GCNGC	4 cut(s)	169, 298, 1372, 1521
BmcAI	AGTACT	3 cut(s)	712, 1000, 1350
Bme1390I	CCNGG	7 cut(s)	69, 389, 419, 511, 556, 1162, 1532
Bme18I	GGWCC	1 cut(s)	1031
BmeT110I	CYCGRG	1 cut(s)	614
BmgT120I	GGNCC	2 cut(s)	1031, 1442
BmiI	GGNNCC	2 cut(s)	975, 1033
BmrFI	CCNGG	7 cut(s)	69, 389, 419, 511, 556, 1162, 1532
BmrI	ACTGGG	1 cut(s)	1235
BmsI	GCATC	1 cut(s)	412
BmuI	ACTGGG	1 cut(s)	1235
BplI	GAGNNNNNCTC	2 cut(s)	608, 640
Bpu10I	CCTNAGC	1 cut(s)	1047
BpuEI	CTTGAG	3 cut(s)	418, 744, 1135
BpuMI	CCSGG	2 cut(s)	556, 1532
BsaI	GGTCTC	3 cut(s)	545, 611, 1170
BsaJI	CCNNGG	5 cut(s)	417, 1142, 1160, 1247, 1530
BsaWI	WCCGGW	1 cut(s)	83
BsaXI	ACNNNNNCTCC	2 cut(s)	675, 705
Bsc4I	CCNNNNNNNGG	3 cut(s)	469, 510, 555
Bse118I	RCCGGY	1 cut(s)	83
Bse1I	ACTGG	7 cut(s)	367, 996, 1093, 1241, 1292, 1346, 1469
Bse3DI	GCAATG	2 cut(s)	599, 1510
BseBI	CCWGG	5 cut(s)	69, 389, 419, 511, 1162
BseDI	CCNNGG	5 cut(s)	417, 1142, 1160, 1247, 1530
BseGI	GGATG	4 cut(s)	64, 427, 545, 785
BseLI	CCNNNNNNNGG	3 cut(s)	469, 510, 555
BseMI	GCAATG	2 cut(s)	599, 1510
BseMII	CTCAG	4 cut(s)	192, 266, 1061, 1241
BseNI	ACTGG	7 cut(s)	367, 996, 1093, 1241, 1292, 1346, 1469
BseSI	GKGCMC	1 cut(s)	1398
BseXI	GCAGC	4 cut(s)	179, 308, 1357, 1531
BseYI	CCCAGC	1 cut(s)	332
BsgI	GTGCAG	2 cut(s)	186, 315
BshFI	GGCC	4 cut(s)	473, 1092, 1443, 1494
BshTI	ACCGGT	1 cut(s)	83
BsiHKAI	GWGCWC	2 cut(s)	595, 1204
BsiHKCI	CYCGRG	1 cut(s)	614
BsiSI	CCGG	3 cut(s)	84, 556, 1532
BslFI	GGGAC	1 cut(s)	1017
BslI	CCNNNNNNNGG	3 cut(s)	469, 510, 555
BsmAI	GTCTC	3 cut(s)	545, 611, 1170
BsmFI	GGGAC	1 cut(s)	1017
BsmI	GAATGC	3 cut(s)	565, 1372, 1560
BsnI	GGCC	4 cut(s)	473, 1092, 1443, 1494
Bso31I	GGTCTC	3 cut(s)	545, 611, 1170
BsoBI	CYCGRG	1 cut(s)	614
Bsp1286I	GDGCHC	3 cut(s)	595, 1204, 1398
Bsp143I	GATC	5 cut(s)	71, 328, 442, 1342, 1420
BspACI	CCGC	3 cut(s)	524, 621, 956
BspANI	GGCC	4 cut(s)	473, 1092, 1443, 1494
BspCNI	CTCAG	4 cut(s)	191, 265, 1060, 1240
BspLI	GGNNCC	2 cut(s)	975, 1033
BspMAI	CTGCAG	1 cut(s)	376
BspMI	ACCTGC	1 cut(s)	2
BspPI	GGATC	4 cut(s)	79, 323, 1337, 1428
BspQI	GCTCTTC	1 cut(s)	525
BspTNI	GGTCTC	3 cut(s)	545, 611, 1170
BsrDI	GCAATG	2 cut(s)	599, 1510
BsrFI	RCCGGY	1 cut(s)	83
BsrI	ACTGG	7 cut(s)	367, 996, 1093, 1241, 1292, 1346, 1469
BssAI	RCCGGY	1 cut(s)	83
BssECI	CCNNGG	5 cut(s)	417, 1142, 1160, 1247, 1530
BssMI	GATC	5 cut(s)	71, 328, 442, 1342, 1420
BssNAI	GTATAC	1 cut(s)	833
Bst1107I	GTATAC	1 cut(s)	833
Bst2UI	CCWGG	5 cut(s)	69, 389, 419, 511, 1162
Bst4CI	ACNGT	4 cut(s)	663, 973, 1185, 1488
Bst6I	CTCTTC	3 cut(s)	525, 862, 1134
BstC8I	GCNNGC	1 cut(s)	1517
BstDEI	CTNAG	4 cut(s)	178, 252, 1047, 1227
BstDSI	CCRYGG	1 cut(s)	1247
BstF5I	GGATG	4 cut(s)	64, 427, 545, 785
BstKTI	GATC	5 cut(s)	74, 331, 445, 1345, 1423
BstMAI	GTCTC	3 cut(s)	545, 611, 1170
BstMBI	GATC	5 cut(s)	71, 328, 442, 1342, 1420
BstMWI	GCNNNNNNNGC	2 cut(s)	590, 1410
BstNI	CCWGG	5 cut(s)	69, 389, 419, 511, 1162
BstNSI	RCATGY	1 cut(s)	186
BstSCI	CCNGG	7 cut(s)	67, 387, 417, 509, 554, 1160, 1530
BstSFI	CTRYAG	1 cut(s)	372
BstSLI	GKGCMC	1 cut(s)	1398
BstV1I	GCAGC	4 cut(s)	179, 308, 1357, 1531
BstX2I	RGATCY	2 cut(s)	71, 1420
BstYI	RGATCY	2 cut(s)	71, 1420
BstZ17I	GTATAC	1 cut(s)	833
BsuRI	GGCC	4 cut(s)	473, 1092, 1443, 1494
BtgI	CCRYGG	1 cut(s)	1247
BtgZI	GCGATG	1 cut(s)	651
BtsCI	GGATG	4 cut(s)	64, 427, 545, 785
BtsI	GCAGTG	1 cut(s)	1097
BtsIMutI	CAGTG	6 cut(s)	260, 360, 485, 659, 1097, 1181
BveI	ACCTGC	1 cut(s)	2
Cac8I	GCNNGC	1 cut(s)	1517
Cfr10I	RCCGGY	1 cut(s)	83
Cfr13I	GGNCC	2 cut(s)	1031, 1442
CsiI	ACCWGGT	1 cut(s)	509
Csp6I	GTAC	4 cut(s)	315, 711, 999, 1349
CspAI	ACCGGT	1 cut(s)	83
CviAII	CATG	4 cut(s)	183, 323, 1505, 1557
CviQI	GTAC	4 cut(s)	315, 711, 999, 1349
DdeI	CTNAG	4 cut(s)	178, 252, 1047, 1227
DpnI	GATC	5 cut(s)	73, 330, 444, 1344, 1422
DpnII	GATC	5 cut(s)	71, 328, 442, 1342, 1420
EaeI	YGGCCR	2 cut(s)	1090, 1492
Eam1104I	CTCTTC	3 cut(s)	525, 862, 1134
EarI	CTCTTC	3 cut(s)	525, 862, 1134
EciI	GGCGGA	1 cut(s)	513
Eco31I	GGTCTC	3 cut(s)	545, 611, 1170
Eco47I	GGWCC	1 cut(s)	1031
Eco57I	CTGAAG	1 cut(s)	51
Eco88I	CYCGRG	1 cut(s)	614
EcoRII	CCWGG	5 cut(s)	67, 387, 417, 509, 1160
EcoT22I	ATGCAT	1 cut(s)	1562
FaeI	CATG	4 cut(s)	186, 326, 1508, 1560
FaqI	GGGAC	1 cut(s)	1017
FatI	CATG	4 cut(s)	182, 322, 1504, 1556
FauI	CCCGC	1 cut(s)	963
FblI	GTMKAC	1 cut(s)	832
Fnu4HI	GCNGC	4 cut(s)	168, 297, 1371, 1520
FokI	GGATG	4 cut(s)	51, 434, 532, 772
Fsp4HI	GCNGC	4 cut(s)	168, 297, 1371, 1520
FspBI	CTAG	1 cut(s)	132
GluI	GCNGC	4 cut(s)	168, 297, 1371, 1520
GsaI	CCCAGC	1 cut(s)	336
HaeIII	GGCC	4 cut(s)	473, 1092, 1443, 1494
HapII	CCGG	3 cut(s)	84, 556, 1532
Hin1II	CATG	4 cut(s)	186, 326, 1508, 1560
HpaII	CCGG	3 cut(s)	84, 556, 1532
HphI	GGTGA	6 cut(s)	227, 675, 985, 999, 1266, 1519
Hpy166II	GTNNAC	1 cut(s)	833
Hpy188I	TCNGA	3 cut(s)	647, 1146, 1230
Hpy188III	TCNNGA	4 cut(s)	89, 440, 614, 736
Hpy8I	GTNNAC	1 cut(s)	833
HpyAV	CCTTC	5 cut(s)	816, 873, 1185, 1438, 1510
HpyCH4III	ACNGT	4 cut(s)	663, 973, 1185, 1488
HpyCH4V	TGCA	8 cut(s)	11, 167, 296, 374, 1413, 1466, 1519, 1560
HpyF10VI	GCNNNNNNNGC	2 cut(s)	590, 1410
HpyF3I	CTNAG	4 cut(s)	178, 252, 1047, 1227
Hsp92II	CATG	4 cut(s)	186, 326, 1508, 1560
Kzo9I	GATC	5 cut(s)	71, 328, 442, 1342, 1420
LguI	GCTCTTC	1 cut(s)	525
LmnI	GCTCC	7 cut(s)	385, 568, 598, 808, 1207, 1267, 1318
Lsp1109I	GCAGC	4 cut(s)	179, 308, 1357, 1531
LweI	GCATC	1 cut(s)	412
MabI	ACCWGGT	1 cut(s)	509
MaeI	CTAG	1 cut(s)	132
MaeIII	GTNAC	2 cut(s)	188, 1294
MalI	GATC	5 cut(s)	73, 330, 444, 1344, 1422
MboI	GATC	5 cut(s)	71, 328, 442, 1342, 1420
MboII	GAAGA	8 cut(s)	45, 230, 357, 390, 512, 849, 1121, 1547
MflI	RGATCY	2 cut(s)	71, 1420
MhlI	GDGCHC	3 cut(s)	595, 1204, 1398
MlsI	TGGCCA	1 cut(s)	1494
MluCI	AATT	3 cut(s)	222, 1193, 1389
MluNI	TGGCCA	1 cut(s)	1494
MmeI	TCCRAC	4 cut(s)	122, 124, 253, 598
Mox20I	TGGCCA	1 cut(s)	1494
Mph1103I	ATGCAT	1 cut(s)	1562
MroXI	GAANNNNTTC	1 cut(s)	222
MscI	TGGCCA	1 cut(s)	1494
MseI	TTAA	4 cut(s)	111, 156, 285, 1308
Msp20I	TGGCCA	1 cut(s)	1494
MspA1I	CMGCKG	1 cut(s)	170
MspI	CCGG	3 cut(s)	84, 556, 1532
MspR9I	CCNGG	7 cut(s)	69, 389, 419, 511, 556, 1162, 1532
Mva1269I	GAATGC	3 cut(s)	565, 1372, 1560
MvaI	CCWGG	5 cut(s)	69, 389, 419, 511, 1162
MwoI	GCNNNNNNNGC	2 cut(s)	590, 1410
NciI	CCSGG	2 cut(s)	556, 1532
NdeII	GATC	5 cut(s)	71, 328, 442, 1342, 1420
NlaIII	CATG	4 cut(s)	186, 326, 1508, 1560
NlaIV	GGNNCC	2 cut(s)	975, 1033
NmuCI	GTSAC	1 cut(s)	1294
NsiI	ATGCAT	1 cut(s)	1562
NspI	RCATGY	1 cut(s)	186
PciSI	GCTCTTC	1 cut(s)	525
PctI	GAATGC	3 cut(s)	565, 1372, 1560
PdmI	GAANNNNTTC	1 cut(s)	222
PflFI	GACNNNGTC	1 cut(s)	511
PfoI	TCCNGGA	2 cut(s)	67, 387
PinAI	ACCGGT	1 cut(s)	83
PkrI	GCNGC	4 cut(s)	169, 298, 1372, 1521
Psp6I	CCWGG	5 cut(s)	67, 387, 417, 509, 1160
PspFI	CCCAGC	1 cut(s)	332
PspGI	CCWGG	5 cut(s)	67, 387, 417, 509, 1160
PspN4I	GGNNCC	2 cut(s)	975, 1033
PspPI	GGNCC	2 cut(s)	1031, 1442
PstI	CTGCAG	1 cut(s)	376
PsuI	RGATCY	2 cut(s)	71, 1420
PsyI	GACNNNGTC	1 cut(s)	511
PvuII	CAGCTG	1 cut(s)	170
RsaI	GTAC	4 cut(s)	316, 712, 1000, 1350
RsaNI	GTAC	4 cut(s)	315, 711, 999, 1349
SapI	GCTCTTC	1 cut(s)	525
SaqAI	TTAA	4 cut(s)	111, 156, 285, 1308
SatI	GCNGC	4 cut(s)	168, 297, 1371, 1520
Sau3AI	GATC	5 cut(s)	71, 328, 442, 1342, 1420
Sau96I	GGNCC	2 cut(s)	1031, 1442
ScaI	AGTACT	3 cut(s)	712, 1000, 1350
ScrFI	CCNGG	7 cut(s)	69, 389, 419, 511, 556, 1162, 1532
SduI	GDGCHC	3 cut(s)	595, 1204, 1398
SexAI	ACCWGGT	1 cut(s)	509
SfaNI	GCATC	1 cut(s)	412
SfcI	CTRYAG	1 cut(s)	372
SinI	GGWCC	1 cut(s)	1031
SmlI	CTYRAG	3 cut(s)	433, 759, 1114
SmoI	CTYRAG	3 cut(s)	433, 759, 1114
Sse9I	AATT	3 cut(s)	222, 1193, 1389
SsiI	CCGC	3 cut(s)	524, 621, 956
SspI	AATATT	1 cut(s)	356
SspMI	CTAG	1 cut(s)	132
StyD4I	CCNGG	7 cut(s)	67, 387, 417, 509, 554, 1160, 1530
TaaI	ACNGT	4 cut(s)	663, 973, 1185, 1488
TaqI	TCGA	3 cut(s)	260, 439, 895
TasI	AATT	3 cut(s)	222, 1193, 1389
TatI	WGTACW	3 cut(s)	710, 998, 1348
Tru1I	TTAA	4 cut(s)	111, 156, 285, 1308
Tru9I	TTAA	4 cut(s)	111, 156, 285, 1308
TscAI	CASTG	6 cut(s)	260, 367, 492, 666, 1104, 1188
TseFI	GTSAC	1 cut(s)	1294
TseI	GCWGC	4 cut(s)	167, 296, 1370, 1519
Tsp45I	GTSAC	1 cut(s)	1294
TspDTI	ATGAA	6 cut(s)	735, 765, 1113, 1167, 1392, 1554
TspGWI	ACGGA	1 cut(s)	1264
TspRI	CASTG	6 cut(s)	260, 367, 492, 666, 1104, 1188
Tth111I	GACNNNGTC	1 cut(s)	511
VpaK11BI	GGWCC	1 cut(s)	1031
XapI	RAATTY	2 cut(s)	222, 1193
XceI	RCATGY	1 cut(s)	186
XmiI	GTMKAC	1 cut(s)	832
XmnI	GAANNNNTTC	1 cut(s)	222
XspI	CTAG	1 cut(s)	132
ZrmI	AGTACT	3 cut(s)	712, 1000, 1350
Zsp2I	ATGCAT	1 cut(s)	1562

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.