Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0006152

Physical Location & Seq

Genomic Coordinates Reverse (-)

12035886 .. 12041461

Gene Structure 5576 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1132400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2400 bp

ATGGAAATTGATCTGAACCATGCAGTGAGGGAGGTGGAGAAGAATGCTTATTGCAATGGGGATTGTGGCGGTGTTTGTGTTTATTGCTTGTCCTCTTCAACTTCTTCATCTTCTTCCAATTCATCCTCAGCTCCTGTGGCTTCCTCAATTTATCTGGAGCTTTGGCATGCTTGTGCTGGCCCTCTCATCTCACTCCCCAAGAAAGGGAATGTGGTTGTCTACTTCCCACAAGGCCACTTGGAGCAAGTTGCCTCCTCCTCTCCTTTCTCTCCCATGGAGATGCCCACGTTTGATCTCCACCCGCAGATCTTCTGCAAGGTTGTGAATGTCCAGCTGCTTGCTAACAAGGAGAATGATGAGGTCTACACACATGTCACTTTGCTTCCTCAGCCTGAGTTGGTAGGAACAAATTTGGAAGGGAAAGAGCTTGAAGAGTTGGGAGTGGATGAGGGGGATGGAGGATCACCTACAAAATCAACCCCTCACATGTTTTGCAAAACGCTTACAGCTTCCGATACCAGTACACACGGAGGGTTTTCTGTTCCTCGGAGAGCTGCTGAAGACTGCTTTCCTCCATTGGACTATAAACAGCAGAGGCCGTCTCAAGAACTTGTTGCAAAGGACCTACACGGGGTAGAGTGGAGGTTTCGACATATATATAGAGGTCAGCCAAGGCGACATCTGCTCACTACAGGATGGAGTATTTTCATAAGCCAAAAGAATCTTGTAGCGGGGGATGCTGTGCTTTTTTTGAGGGGTGAAAACGGAGAGCTGAGGTTGGGAATTAGAAGAGCTGTTCGACCTAGAAATGGTCTTCCTGATTCAGTTGTAGGCAACCAGAATTCGTACCCTAGTGTTCTTTCTTTCGTGGCTAATGCGATATCCACCAAGAGCATGTTTCATGTATTCTACAGTCCAAGGGCAAGCCATGCAGAGTTTGTCATTCCCTACCAAAAATATGTCAAAAGCATCACTAATCCGGTGACCACCGGGACACGATTCAAAATGAGATTTGATAGGGATGATTCACCTGAAAGAAGGTGTAGTGGTGTAGTGACTGGTATCACCGACTTGGATCCGTTTCGATGGCCAAACTCAAAATGGAGATGCTTGATGGTCAGATGGGATGAAGATATAGGAAATGATCATCAAGAAAGAGTCTCGCTGTGGGAGGTTGATCCTTCTGTTTCTCTCCCACCTTTGAGCATCCAGTCTTCTCCAAGACTGAAGAAACTGCGGACAAGTCTGCAGGGAACCCCACCCATCCCCTCCATCACTGCTGGAGGGGCTGGGTTTAAGGACTTTGAGGAATCAGTTAAATCCTCTAAGGTCTTGCAAGGTCAAGAAAATATAGGTTTCATATCACCCCTCTATGGGGGTGATACTGTAAACCGCCCGCAAGATTTTGAGATGCACGCTCCGGCACATCTAAGTCTTGCATCAAATGCAACACAGAAGGCTACTATTGATGAGCTTATGAGGGCTCGCCGCACCCCCTACACAGGATTTGCGGAATCAGATAGATTTCCAAAAGTCTTGCAAGGTCAAGAAATATGCCCATTGAGATCGTTGACAGGAAAAGCAAATTTCACCCTAGGTGATTGGGAATCCAACAATGGTTGCGCACCTTTCAACGTTTATCAACCGCCCAAACCAAATTATTTCTCTCTAGCTTCTGGATCCCTTCCAAATATGTACTTTCCTTATGGTGACATTCACAGAGCTGGCCAAGATCCCACAATGTGCTCTAATGCTACCAACTTACCCAGAGAGAAAATGCAAATCAACCCATACTCTATGCAGATGGGAGTTGCAAGAAATGAAGTTGGAAGGCCAAATAAACCTTGTGAACATAAGACACAGGAGAGTACTTCTACCCTTCCCGCTTTAGTGCCAAATCCAAGAAATCCAAATGATAAAGACTATAACGGGACTGTTACTGGGTGTAAACTTTTTGGTTTTTCCTTGACCGGGGACAATCCCTCTCCAAACTCTCAGAGTTCCAGTAAGCGGAGTTGTACAAAGGTTCACAAGCAAGGCAGCTTAGTGGGAAGAGCCATTGATCTCGCAAAACTGAATGGCTATGGTGACCTGCTGACCGAACTGGAGCGGCTGTTTGGCATGGAAGGCCTTCTTCGAGATTCTGATAAAGGATGGCGGATCTTGTACACTGATAGTGAGAACGATATGATGGTTGTTGGGGATGACCCATGGCATGAATTTTGCAATGTGGTCTCCAAAATCCATATATATACCCGGGAAGAAGTGGAGAAGATGACCATCGGAATGATCAGCGATGATACTCAAAGTTGTTTGGAACATGCGCCGGTCATGCTTGAAGTGTCAAAGTCCTCATCCGTGAGCCAGCCGGATTCTTCTCCGACGGCTATCCGGGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001708 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009791 GO:0009889 GO:0009987 GO:0010050 GO:0010158 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045165 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AUX_IAA Auxin_resp B3

Protein Analysis

800

Amino Acids

88.49

Weight (kDa)

6.42

Isoelectric Point (pI)

49.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	164 - 265	1.3e-22	B3 DNA binding domain
ARF_AD	PF06507	313 - 395	8.9e-34	Auxin response factor ancillary domain
AUX_IAA	PF02309	667 - 755	8.4e-06	AUX/IAA family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006152)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60450 AT5G60450
fragaria_vesca	FvH4_3g32860 FvH4_3g32860 FvH4_3g32860 FvH4_3g32860 FvH4_3g32860
malus_domestica	MD03G1116000.v1.1 MD11G1132400.v1.1
prunus_persica	Prupe.6G097700_v2.0.a1 Prupe.6G097700_v2.0.a1 Prupe.6G097700_v2.0.a1 Prupe.6G097700_v2.0.a1 Prupe.6G097700_v2.0.a1
pyrus_communis	pycom11g10920
rosa_chinensis	RchiOBHm_Chr5g0060011
rosa_laevigata	RLG00000035338
rosa_multiflora	Rmu_sc0000493.1_g000006
rosa_roxburghii	Rroxscaffold_1G00020650
rosa_rugosa	Rorug05G0327400 Rorug05G0327500 Rorug05G0327600
rosa_samantha	Rh5AG391400 Rh5BG404000 Rh5CG427800 Rh5DG419600
rosa_wichuraiana	Rw5G036880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1624
Acc36I	ACCTGC	1 cut(s)	2100
AccBSI	CCGCTC	1 cut(s)	2110
AccI	GTMKAC	2 cut(s)	219, 363
AclI	AACGTT	1 cut(s)	1635
AclWI	GGATC	8 cut(s)	469, 1070, 1083, 1172, 1674, 1687, 1727, 2168
AcoI	YGGCCR	2 cut(s)	1088, 1726
AcsI	RAATTY	4 cut(s)	409, 841, 1585, 2219
AcuI	CTGAAG	2 cut(s)	579, 1247
AdeI	CACNNNGTG	1 cut(s)	1743
AfaI	GTAC	6 cut(s)	523, 848, 1697, 1870, 2020, 2168
AflIII	ACRYGT	2 cut(s)	370, 486
AgsI	TTSAA	5 cut(s)	99, 431, 1003, 1633, 2339
Alw21I	GWGCWC	1 cut(s)	1748
Alw26I	GTCTC	3 cut(s)	606, 1165, 2239
AlwI	GGATC	8 cut(s)	469, 1070, 1083, 1172, 1674, 1687, 1727, 2168
AlwNI	CAGNNNCTG	1 cut(s)	134
Ama87I	CYCGRG	1 cut(s)	2256
AoxI	GGCC	7 cut(s)	178, 232, 596, 1088, 1726, 1832, 2128
ApeKI	GCWGC	3 cut(s)	334, 554, 2040
ApoI	RAATTY	4 cut(s)	409, 841, 1585, 2219
Asp700I	GAANNNNTTC	1 cut(s)	2130
AspA2I	CCTAGG	1 cut(s)	1594
AspLEI	GCGC	2 cut(s)	1625, 2326
AspS9I	GGNCC	2 cut(s)	179, 622
AsuC2I	CCSGG	5 cut(s)	991, 1972, 2257, 2258, 2393
AvaI	CYCGRG	1 cut(s)	2256
AvaII	GGWCC	1 cut(s)	622
AvrII	CCTAGG	1 cut(s)	1594
BalI	TGGCCA	2 cut(s)	1090, 1728
BamHI	GGATCC	2 cut(s)	1075, 1679
BanII	GRGCYC	1 cut(s)	1486
BbsI	GAAGAC	3 cut(s)	567, 806, 1206
Bbv12I	GWGCWC	1 cut(s)	1748
BbvCI	CCTCAGC	3 cut(s)	127, 387, 773
BbvI	GCAGC	3 cut(s)	321, 541, 2052
BceAI	ACGGC	1 cut(s)	583
BclI	TGATCA	2 cut(s)	1144, 2289
BcnI	CCSGG	5 cut(s)	991, 1972, 2257, 2258, 2393
BcoDI	GTCTC	3 cut(s)	606, 1165, 2239
BfaI	CTAG	4 cut(s)	804, 852, 1595, 1670
BfmI	CTRYAG	3 cut(s)	690, 910, 1247
BfuAI	ACCTGC	1 cut(s)	2100
BglII	AGATCT	1 cut(s)	306
BisI	GCNGC	5 cut(s)	335, 555, 1489, 2041, 2111
BlnI	CCTAGG	1 cut(s)	1594
BlsI	GCNGC	5 cut(s)	336, 556, 1490, 2042, 2112
BmcAI	AGTACT	1 cut(s)	1870
Bme1390I	CCNGG	5 cut(s)	991, 1972, 2257, 2258, 2393
Bme18I	GGWCC	1 cut(s)	622
BmeT110I	CYCGRG	1 cut(s)	2256
BmgT120I	GGNCC	2 cut(s)	179, 622
BmiI	GGNNCC	3 cut(s)	1077, 1255, 1681
BmrFI	CCNGG	5 cut(s)	991, 1972, 2257, 2258, 2393
BmrI	ACTGGG	1 cut(s)	1950
BmsI	GCATC	7 cut(s)	270, 727, 978, 1097, 1215, 1401, 1448
BmuI	ACTGGG	1 cut(s)	1950
BpiI	GAAGAC	3 cut(s)	567, 806, 1206
BplI	GAGNNNNNCTC	2 cut(s)	586, 618
BpmI	CTGGAG	3 cut(s)	176, 1302, 2126
Bpu10I	CCTNAGC	3 cut(s)	127, 387, 773
BpuEI	CTTGAG	1 cut(s)	588
BpuMI	CCSGG	5 cut(s)	991, 1972, 2257, 2258, 2393
BsaBI	GATNNNNATC	1 cut(s)	2279
BsaI	GGTCTC	1 cut(s)	2239
BsaJI	CCNNGG	8 cut(s)	273, 545, 671, 917, 1594, 1971, 2210, 2256
BsaWI	WCCGGW	1 cut(s)	979
BsaXI	ACNNNNNCTCC	2 cut(s)	2099, 2129
Bse118I	RCCGGY	1 cut(s)	2326
Bse1I	ACTGG	6 cut(s)	519, 1063, 1210, 1945, 2004, 2109
Bse3DI	GCAATG	2 cut(s)	61, 2233
Bse8I	GATNNNNATC	1 cut(s)	2279
BseDI	CCNNGG	8 cut(s)	273, 545, 671, 917, 1594, 1971, 2210, 2256
BseJI	GATNNNNATC	1 cut(s)	2279
BseMI	GCAATG	2 cut(s)	61, 2233
BseMII	CTCAG	5 cut(s)	141, 384, 401, 764, 2009
BseNI	ACTGG	6 cut(s)	519, 1063, 1210, 1945, 2004, 2109
BseRI	GAGGAG	2 cut(s)	244, 247
BseXI	GCAGC	3 cut(s)	321, 541, 2052
BseYI	CCCAGC	1 cut(s)	1289
BshFI	GGCC	7 cut(s)	180, 234, 598, 1090, 1728, 1834, 2130
BsiHKAI	GWGCWC	1 cut(s)	1748
BsiHKCI	CYCGRG	1 cut(s)	2256
BsiSI	CCGG	8 cut(s)	980, 990, 1421, 1971, 2257, 2327, 2369, 2392
BslFI	GGGAC	3 cut(s)	1006, 1945, 1988
BsmAI	GTCTC	3 cut(s)	606, 1165, 2239
BsmBI	CGTCTC	1 cut(s)	606
BsmFI	GGGAC	3 cut(s)	1006, 1945, 1988
BsmI	GAATGC	1 cut(s)	49
BsnI	GGCC	7 cut(s)	180, 234, 598, 1090, 1728, 1834, 2130
Bso31I	GGTCTC	1 cut(s)	2239
BsoBI	CYCGRG	1 cut(s)	2256
Bsp1286I	GDGCHC	2 cut(s)	1486, 1748
Bsp1407I	TGTACA	2 cut(s)	2018, 2166
Bsp19I	CCATGG	2 cut(s)	273, 2210
BspANI	GGCC	7 cut(s)	180, 234, 598, 1090, 1728, 1834, 2130
BspCNI	CTCAG	5 cut(s)	140, 385, 400, 765, 2008
BspLI	GGNNCC	3 cut(s)	1077, 1255, 1681
BspMAI	CTGCAG	1 cut(s)	1251
BspMI	ACCTGC	1 cut(s)	2100
BspPI	GGATC	8 cut(s)	469, 1070, 1083, 1172, 1674, 1687, 1727, 2168
BspQI	GCTCTTC	2 cut(s)	784, 2047
BspTNI	GGTCTC	1 cut(s)	2239
BsrBI	CCGCTC	1 cut(s)	2110
BsrDI	GCAATG	2 cut(s)	61, 2233
BsrFI	RCCGGY	1 cut(s)	2326
BsrGI	TGTACA	2 cut(s)	2018, 2166
BsrI	ACTGG	6 cut(s)	519, 1063, 1210, 1945, 2004, 2109
BssAI	RCCGGY	1 cut(s)	2326
BssECI	CCNNGG	8 cut(s)	273, 545, 671, 917, 1594, 1971, 2210, 2256
BssT1I	CCWWGG	5 cut(s)	273, 671, 917, 1594, 2210
Bst4CI	ACNGT	3 cut(s)	914, 1387, 1936
Bst6I	CTCTTC	4 cut(s)	100, 426, 784, 2047
BstAPI	GCANNNNNTGC	2 cut(s)	929, 1445
BstAUI	TGTACA	2 cut(s)	2018, 2166
BstC8I	GCNNGC	9 cut(s)	168, 178, 339, 925, 1397, 1416, 1486, 1726, 2366
BstDEI	CTNAG	8 cut(s)	127, 387, 393, 773, 1326, 1430, 1995, 2044
BstDSI	CCRYGG	2 cut(s)	273, 2210
BstEII	GGTNACC	2 cut(s)	982, 2087
BstHHI	GCGC	2 cut(s)	1625, 2326
BstMAI	GTCTC	3 cut(s)	606, 1165, 2239
BstMWI	GCNNNNNNNGC	9 cut(s)	137, 388, 682, 737, 929, 1286, 1445, 2127, 2332
BstNSI	RCATGY	5 cut(s)	170, 374, 490, 898, 2324
BstPI	GGTNACC	2 cut(s)	982, 2087
BstSCI	CCNGG	5 cut(s)	989, 1970, 2255, 2256, 2391
BstSFI	CTRYAG	3 cut(s)	690, 910, 1247
BstV1I	GCAGC	3 cut(s)	321, 541, 2052
BstV2I	GAAGAC	3 cut(s)	567, 806, 1206
BstX2I	RGATCY	5 cut(s)	306, 1075, 1679, 1732, 2160
BstYI	RGATCY	5 cut(s)	306, 1075, 1679, 1732, 2160
BsuRI	GGCC	7 cut(s)	180, 234, 598, 1090, 1728, 1834, 2130
BtgI	CCRYGG	2 cut(s)	273, 2210
BtgZI	GCGATG	1 cut(s)	2310
BtsI	GCAGTG	2 cut(s)	30, 1275
BtsIMutI	CAGTG	3 cut(s)	30, 1275, 2169
BveI	ACCTGC	1 cut(s)	2100
Cac8I	GCNNGC	9 cut(s)	168, 178, 339, 925, 1397, 1416, 1486, 1726, 2366
CaiI	CAGNNNCTG	1 cut(s)	134
CfoI	GCGC	2 cut(s)	1625, 2326
Cfr10I	RCCGGY	1 cut(s)	2326
Cfr13I	GGNCC	2 cut(s)	179, 622
Cfr9I	CCCGGG	1 cut(s)	2256
Csp6I	GTAC	6 cut(s)	522, 847, 1696, 1869, 2019, 2167
CviQI	GTAC	6 cut(s)	522, 847, 1696, 1869, 2019, 2167
DdeI	CTNAG	8 cut(s)	127, 387, 393, 773, 1326, 1430, 1995, 2044
DraIII	CACNNNGTG	1 cut(s)	1743
EaeI	YGGCCR	2 cut(s)	1088, 1726
Eam1104I	CTCTTC	4 cut(s)	100, 426, 784, 2047
EarI	CTCTTC	4 cut(s)	100, 426, 784, 2047
EciI	GGCGGA	1 cut(s)	2173
Eco130I	CCWWGG	5 cut(s)	273, 671, 917, 1594, 2210
Eco147I	AGGCCT	1 cut(s)	2130
Eco24I	GRGCYC	1 cut(s)	1486
Eco31I	GGTCTC	1 cut(s)	2239
Eco32I	GATATC	1 cut(s)	882
Eco47I	GGWCC	1 cut(s)	622
Eco57I	CTGAAG	2 cut(s)	579, 1247
Eco88I	CYCGRG	1 cut(s)	2256
Eco91I	GGTNACC	2 cut(s)	982, 2087
EcoO109I	RGGNCCY	1 cut(s)	622
EcoO65I	GGTNACC	2 cut(s)	982, 2087
EcoRI	GAATTC	1 cut(s)	841
EcoRV	GATATC	1 cut(s)	882
EcoT14I	CCWWGG	5 cut(s)	273, 671, 917, 1594, 2210
EcoT38I	GRGCYC	1 cut(s)	1486
ErhI	CCWWGG	5 cut(s)	273, 671, 917, 1594, 2210
Esp3I	CGTCTC	1 cut(s)	606
FalI	AAGNNNNNCTT	2 cut(s)	2118, 2150
FaqI	GGGAC	3 cut(s)	1006, 1945, 1988
FauI	CCCGC	4 cut(s)	309, 724, 1404, 1891
FbaI	TGATCA	2 cut(s)	1144, 2289
FblI	GTMKAC	2 cut(s)	219, 363
Fnu4HI	GCNGC	5 cut(s)	335, 555, 1489, 2041, 2111
FriOI	GRGCYC	1 cut(s)	1486
Fsp4HI	GCNGC	5 cut(s)	335, 555, 1489, 2041, 2111
FspBI	CTAG	4 cut(s)	804, 852, 1595, 1670
FspI	TGCGCA	1 cut(s)	1624
GlaI	GCGC	2 cut(s)	1624, 2325
GluI	GCNGC	5 cut(s)	335, 555, 1489, 2041, 2111
GsaI	CCCAGC	1 cut(s)	1293
GsuI	CTGGAG	3 cut(s)	176, 1302, 2126
HaeIII	GGCC	7 cut(s)	180, 234, 598, 1090, 1728, 1834, 2130
HapII	CCGG	8 cut(s)	980, 990, 1421, 1971, 2257, 2327, 2369, 2392
HhaI	GCGC	2 cut(s)	1625, 2326
Hin6I	GCGC	2 cut(s)	1623, 2324
HinP1I	GCGC	2 cut(s)	1623, 2324
HincII	GTYRAC	1 cut(s)	1572
HindII	GTYRAC	1 cut(s)	1572
HpaII	CCGG	8 cut(s)	980, 990, 1421, 1971, 2257, 2327, 2369, 2392
Hpy166II	GTNNAC	9 cut(s)	220, 364, 524, 1390, 1572, 1850, 1949, 2029, 2169
Hpy188I	TCNGA	9 cut(s)	15, 514, 549, 1121, 1519, 1998, 2146, 2285, 2382
Hpy188III	TCNNGA	8 cut(s)	155, 605, 818, 1151, 1343, 1547, 1677, 2138
Hpy8I	GTNNAC	9 cut(s)	220, 364, 524, 1390, 1572, 1850, 1949, 2029, 2169
Hpy99I	CGWCG	1 cut(s)	2386
HpyAV	CCTTC	9 cut(s)	410, 1032, 1191, 1450, 1694, 1824, 1889, 2120, 2141
HpyCH4III	ACNGT	3 cut(s)	914, 1387, 1936
HpyCH4IV	ACGT	2 cut(s)	287, 1635
HpyF10VI	GCNNNNNNNGC	9 cut(s)	137, 388, 682, 737, 929, 1286, 1445, 2127, 2332
HpyF3I	CTNAG	8 cut(s)	127, 387, 393, 773, 1326, 1430, 1995, 2044
HpySE526I	ACGT	2 cut(s)	287, 1635
HspAI	GCGC	2 cut(s)	1623, 2324
Ksp22I	TGATCA	2 cut(s)	1144, 2289
LguI	GCTCTTC	2 cut(s)	784, 2047
LmnI	GCTCC	5 cut(s)	136, 157, 241, 1423, 2107
Lsp1109I	GCAGC	3 cut(s)	321, 541, 2052
LweI	GCATC	7 cut(s)	270, 727, 978, 1097, 1215, 1401, 1448
MaeI	CTAG	4 cut(s)	804, 852, 1595, 1670
MaeII	ACGT	2 cut(s)	287, 1635
MaeIII	GTNAC	6 cut(s)	373, 982, 1054, 1709, 1936, 2087
MbiI	CCGCTC	1 cut(s)	2110
MflI	RGATCY	5 cut(s)	306, 1075, 1679, 1732, 2160
MhlI	GDGCHC	2 cut(s)	1486, 1748
MlsI	TGGCCA	2 cut(s)	1090, 1728
MluCI	AATT	9 cut(s)	6, 118, 147, 409, 783, 841, 1585, 1657, 2219
MluNI	TGGCCA	2 cut(s)	1090, 1728
MlyI	GAGTC	1 cut(s)	1167
MmeI	TCCRAC	2 cut(s)	1635, 1807
Mox20I	TGGCCA	2 cut(s)	1090, 1728
MroXI	GAANNNNTTC	1 cut(s)	2130
MscI	TGGCCA	2 cut(s)	1090, 1728
MseI	TTAA	2 cut(s)	1296, 1317
MslI	CAYNNNNRTG	3 cut(s)	171, 278, 2285
Msp20I	TGGCCA	2 cut(s)	1090, 1728
MspA1I	CMGCKG	1 cut(s)	334
MspI	CCGG	8 cut(s)	980, 990, 1421, 1971, 2257, 2327, 2369, 2392
MspR9I	CCNGG	5 cut(s)	991, 1972, 2257, 2258, 2393
Mva1269I	GAATGC	1 cut(s)	49
MwoI	GCNNNNNNNGC	9 cut(s)	137, 388, 682, 737, 929, 1286, 1445, 2127, 2332
NciI	CCSGG	5 cut(s)	991, 1972, 2257, 2258, 2393
NcoI	CCATGG	2 cut(s)	273, 2210
NlaIV	GGNNCC	3 cut(s)	1077, 1255, 1681
NmuCI	GTSAC	5 cut(s)	373, 982, 1054, 1709, 2087
NsbI	TGCGCA	1 cut(s)	1624
NspI	RCATGY	5 cut(s)	170, 374, 490, 898, 2324
PaeI	GCATGC	1 cut(s)	170
PceI	AGGCCT	1 cut(s)	2130
PciI	ACATGT	2 cut(s)	370, 486
PciSI	GCTCTTC	2 cut(s)	784, 2047
PctI	GAATGC	1 cut(s)	49
PdmI	GAANNNNTTC	1 cut(s)	2130
PfeI	GAWTC	9 cut(s)	721, 821, 999, 1025, 1310, 1514, 1607, 2141, 2372
PkrI	GCNGC	5 cut(s)	336, 556, 1490, 2042, 2112
PleI	GAGTC	1 cut(s)	1166
PpsI	GAGTC	1 cut(s)	1166
PpuMI	RGGWCCY	1 cut(s)	622
PscI	ACATGT	2 cut(s)	370, 486
Psp1406I	AACGTT	1 cut(s)	1635
Psp5II	RGGWCCY	1 cut(s)	622
PspEI	GGTNACC	2 cut(s)	982, 2087
PspFI	CCCAGC	1 cut(s)	1289
PspN4I	GGNNCC	3 cut(s)	1077, 1255, 1681
PspPI	GGNCC	2 cut(s)	179, 622
PspPPI	RGGWCCY	1 cut(s)	622
PstI	CTGCAG	1 cut(s)	1251
PstNI	CAGNNNCTG	1 cut(s)	134
PsuI	RGATCY	5 cut(s)	306, 1075, 1679, 1732, 2160
PvuII	CAGCTG	1 cut(s)	334
RsaI	GTAC	6 cut(s)	523, 848, 1697, 1870, 2020, 2168
RsaNI	GTAC	6 cut(s)	522, 847, 1696, 1869, 2019, 2167
RseI	CAYNNNNRTG	3 cut(s)	171, 278, 2285
SapI	GCTCTTC	2 cut(s)	784, 2047
SaqAI	TTAA	2 cut(s)	1296, 1317
SatI	GCNGC	5 cut(s)	335, 555, 1489, 2041, 2111
Sau96I	GGNCC	2 cut(s)	179, 622
ScaI	AGTACT	1 cut(s)	1870
SchI	GAGTC	1 cut(s)	1167
ScrFI	CCNGG	5 cut(s)	991, 1972, 2257, 2258, 2393
SduI	GDGCHC	2 cut(s)	1486, 1748
SfaNI	GCATC	7 cut(s)	270, 727, 978, 1097, 1215, 1401, 1448
SfcI	CTRYAG	3 cut(s)	690, 910, 1247
SinI	GGWCC	1 cut(s)	622
SmaI	CCCGGG	1 cut(s)	2258
SmiMI	CAYNNNNRTG	3 cut(s)	171, 278, 2285
SmlI	CTYRAG	1 cut(s)	603
SmoI	CTYRAG	1 cut(s)	603
SphI	GCATGC	1 cut(s)	170
Sse9I	AATT	9 cut(s)	6, 118, 147, 409, 783, 841, 1585, 1657, 2219
SseBI	AGGCCT	1 cut(s)	2130
SspMI	CTAG	4 cut(s)	804, 852, 1595, 1670
StuI	AGGCCT	1 cut(s)	2130
StyD4I	CCNGG	5 cut(s)	989, 1970, 2255, 2256, 2391
StyI	CCWWGG	5 cut(s)	273, 671, 917, 1594, 2210
TaaI	ACNGT	3 cut(s)	914, 1387, 1936
TaiI	ACGT	2 cut(s)	290, 1638
TaqI	TCGA	4 cut(s)	649, 799, 1084, 2137
TaqII	GACCGA	1 cut(s)	2114
TasI	AATT	9 cut(s)	6, 118, 147, 409, 783, 841, 1585, 1657, 2219
TatI	WGTACW	5 cut(s)	521, 1695, 1868, 2018, 2166
TauI	GCSGC	2 cut(s)	1491, 2113
TfiI	GAWTC	9 cut(s)	721, 821, 999, 1025, 1310, 1514, 1607, 2141, 2372
Tru1I	TTAA	2 cut(s)	1296, 1317
Tru9I	TTAA	2 cut(s)	1296, 1317
TscAI	CASTG	3 cut(s)	30, 1282, 2176
TseFI	GTSAC	5 cut(s)	373, 982, 1054, 1709, 2087
TseI	GCWGC	3 cut(s)	334, 554, 2040
Tsp45I	GTSAC	5 cut(s)	373, 982, 1054, 1709, 2087
TspDTI	ATGAA	8 cut(s)	96, 111, 697, 890, 1143, 1348, 1836, 2232
TspGWI	ACGGA	4 cut(s)	543, 780, 1068, 2347
TspMI	CCCGGG	1 cut(s)	2256
TspRI	CASTG	3 cut(s)	30, 1282, 2176
VpaK11BI	GGWCC	1 cut(s)	622
XapI	RAATTY	4 cut(s)	409, 841, 1585, 2219
XceI	RCATGY	5 cut(s)	170, 374, 490, 898, 2324
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1098
XmaI	CCCGGG	1 cut(s)	2256
XmaJI	CCTAGG	1 cut(s)	1594
XmiI	GTMKAC	2 cut(s)	219, 363
XmnI	GAANNNNTTC	1 cut(s)	2130
XspI	CTAG	4 cut(s)	804, 852, 1595, 1670
ZrmI	AGTACT	1 cut(s)	1870

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.