Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0006152

Physical Location & Seq

Genomic Coordinates Reverse (-)

39414217 .. 39416355

Gene Structure 2139 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0327600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

ATGTTTCTGAGGCTTACTAATGATGTCATTTGTAGAGTAGCTTTGGGGAGGAAATACAGTGATCGCGGGGAAGGTCGAGGGAGGATGTTTATGGAGCTTTCTGTAGAGTTCACAGAGTTAATGGGGCGTGTAAATATCGGTGACTATATTCCATGGCTTGCTTGGGTTAGCCGTGTTAATGGCTTGGAAGCTAAACTAGACAGTCTGGCTAAACGGTTTGATGAATTTTTGGATATGGTTGTTCAAGAGCATATGGATAGTTCAAAGGGTTCTGAAGGAGACGAGGATGATGGCCATAAGGATTTAGTGGACGTTTTGCTTTCGGTTCAAAAAGAAAACACAGTCGGTCTTCCCATCGATAGAGTTAGCATAAAGGCTATCATCTTGGATATATTCGTGGCTGGCACCGATACTACATTTGGAACTTTAGAGTGGACGATGTCTGAGCTTTTCAAGCATCCAAGTGTTATGAAGAAATTGCAAAGTGAGGTAAGGAGAATAGTCGGAAACATAAAAGACATAATAACAGAGGATAATTTGGTTGAAATCCCCTATTTGAAGGCAGTGATCAAGGAGTCTCTTCGCTTGCATCCTCCAGTTCCATTACTATTGCCCAGGATTGCTACCCAAGATGCAAAGATAAACGGTTACAACATTTTGTCCGGCACACAAATTGGAAGGGATCCCAAGTCATACAAAGAACCAGAAGAGTTTAAACCAGAAAGATTTATGAACAATGCCATAGATTATAAAGGGAACGATGGTTTCCAGTTTATTCCATTTGGGGCTGGTAGGAGGGGTTGTCCAGGAATTCAGTTTGCCATGGCTGTTCAAGAGATTGCTTTAGCAAATTTAATTCACAAGTTTGATTGGGTATTGCCTGATGGTGCAAGAGGGGAGGATTTAGACATGACTGAAGAAACTGGTCAAACTGTACATAGAAAATATCCTCTTAAAGCCGTGGCTATTCCATATCCTTGCCAAGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001708 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009791 GO:0009889 GO:0009987 GO:0010050 GO:0010158 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045165 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AUX_IAA Auxin_resp B3

Protein Analysis

329

Amino Acids

37.09

Weight (kDa)

5.42

Isoelectric Point (pI)

33.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	3 - 306	5.4e-68	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006152)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60450 AT5G60450
fragaria_vesca	FvH4_3g32860 FvH4_3g32860 FvH4_3g32860 FvH4_3g32860 FvH4_3g32860
malus_domestica	MD03G1116000.v1.1 MD11G1132400.v1.1
prunus_persica	Prupe.6G097700_v2.0.a1 Prupe.6G097700_v2.0.a1 Prupe.6G097700_v2.0.a1 Prupe.6G097700_v2.0.a1 Prupe.6G097700_v2.0.a1
pyrus_communis	pycom11g10920
rosa_chinensis	RchiOBHm_Chr5g0060011
rosa_laevigata	RLG00000035338
rosa_multiflora	Rmu_sc0000493.1_g000006
rosa_roxburghii	Rroxscaffold_1G00020650
rosa_rugosa	Rorug05G0327400 Rorug05G0327500 Rorug05G0327600
rosa_samantha	Rh5AG391400 Rh5BG404000 Rh5CG427800 Rh5DG419600
rosa_wichuraiana	Rw5G036880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	750
AccB1I	GGYRCC	1 cut(s)	404
AccII	CGCG	1 cut(s)	66
AciI	CCGC	1 cut(s)	66
AclWI	GGATC	2 cut(s)	677, 690
AcoI	YGGCCR	1 cut(s)	292
AcsI	RAATTY	3 cut(s)	224, 810, 850
AcuI	CTGAAG	2 cut(s)	294, 936
AfaI	GTAC	1 cut(s)	936
AfiI	CCNNNNNNNGG	1 cut(s)	983
AgsI	TTSAA	7 cut(s)	245, 264, 329, 454, 545, 559, 833
AjnI	CCWGG	2 cut(s)	614, 805
AluBI	AGCT	4 cut(s)	41, 97, 191, 448
AluI	AGCT	4 cut(s)	41, 97, 191, 448
Alw26I	GTCTC	2 cut(s)	273, 582
AlwI	GGATC	2 cut(s)	677, 690
AoxI	GGCC	1 cut(s)	292
ApoI	RAATTY	3 cut(s)	224, 810, 850
AsuHPI	GGTGA	1 cut(s)	152
BalI	TGGCCA	1 cut(s)	294
BamHI	GGATCC	1 cut(s)	682
BanI	GGYRCC	1 cut(s)	404
BbsI	GAAGAC	1 cut(s)	341
BccI	CCATC	4 cut(s)	284, 362, 755, 878
BceAI	ACGGC	2 cut(s)	156, 944
BciT130I	CCWGG	2 cut(s)	616, 807
BclI	TGATCA	1 cut(s)	567
BcoDI	GTCTC	2 cut(s)	273, 582
BfaI	CTAG	1 cut(s)	197
BfmI	CTRYAG	1 cut(s)	102
Bme1390I	CCNGG	2 cut(s)	616, 807
BmiI	GGNNCC	2 cut(s)	406, 684
BmrFI	CCNGG	2 cut(s)	616, 807
BmsI	GCATC	3 cut(s)	466, 598, 622
BpiI	GAAGAC	1 cut(s)	341
BpmI	CTGGAG	1 cut(s)	579
Bsa29I	ATCGAT	1 cut(s)	357
BsaJI	CCNNGG	5 cut(s)	152, 614, 822, 960, 982
BsaXI	ACNNNNNCTCC	2 cut(s)	787, 817
Bsc4I	CCNNNNNNNGG	1 cut(s)	983
Bse1I	ACTGG	3 cut(s)	596, 769, 928
BseBI	CCWGG	2 cut(s)	616, 807
BseCI	ATCGAT	1 cut(s)	357
BseDI	CCNNGG	5 cut(s)	152, 614, 822, 960, 982
BseGI	GGATG	4 cut(s)	90, 292, 457, 589
BseLI	CCNNNNNNNGG	1 cut(s)	983
BseMII	CTCAG	1 cut(s)	435
BseNI	ACTGG	3 cut(s)	596, 769, 928
Bsh1236I	CGCG	1 cut(s)	66
BshFI	GGCC	1 cut(s)	294
BshNI	GGYRCC	1 cut(s)	404
BshVI	ATCGAT	1 cut(s)	357
BsiSI	CCGG	1 cut(s)	663
BslI	CCNNNNNNNGG	1 cut(s)	983
BsmAI	GTCTC	2 cut(s)	273, 582
BsmBI	CGTCTC	1 cut(s)	273
BsnI	GGCC	1 cut(s)	294
Bsp1407I	TGTACA	1 cut(s)	934
Bsp143I	GATC	3 cut(s)	61, 567, 682
Bsp19I	CCATGG	2 cut(s)	152, 822
BspACI	CCGC	1 cut(s)	66
BspANI	GGCC	1 cut(s)	294
BspCNI	CTCAG	1 cut(s)	436
BspDI	ATCGAT	1 cut(s)	357
BspFNI	CGCG	1 cut(s)	66
BspLI	GGNNCC	2 cut(s)	406, 684
BspPI	GGATC	2 cut(s)	677, 690
BspT107I	GGYRCC	1 cut(s)	404
BsrGI	TGTACA	1 cut(s)	934
BsrI	ACTGG	3 cut(s)	596, 769, 928
BssECI	CCNNGG	5 cut(s)	152, 614, 822, 960, 982
BssMI	GATC	3 cut(s)	61, 567, 682
BssT1I	CCWWGG	3 cut(s)	152, 822, 982
Bst2UI	CCWGG	2 cut(s)	616, 807
Bst4CI	ACNGT	6 cut(s)	59, 203, 216, 343, 647, 934
Bst6I	CTCTTC	2 cut(s)	585, 702
BstAUI	TGTACA	1 cut(s)	934
BstC8I	GCNNGC	3 cut(s)	159, 403, 587
BstDEI	CTNAG	2 cut(s)	8, 444
BstDSI	CCRYGG	3 cut(s)	152, 822, 960
BstENI	CCTNNNNNAGG	1 cut(s)	981
BstF5I	GGATG	4 cut(s)	90, 292, 457, 589
BstFNI	CGCG	1 cut(s)	66
BstKTI	GATC	3 cut(s)	64, 570, 685
BstMAI	GTCTC	2 cut(s)	273, 582
BstMBI	GATC	3 cut(s)	61, 567, 682
BstMWI	GCNNNNNNNGC	1 cut(s)	454
BstNI	CCWGG	2 cut(s)	616, 807
BstSCI	CCNGG	2 cut(s)	614, 805
BstSFI	CTRYAG	1 cut(s)	102
BstUI	CGCG	1 cut(s)	66
BstV2I	GAAGAC	1 cut(s)	341
BstX2I	RGATCY	1 cut(s)	682
BstYI	RGATCY	1 cut(s)	682
Bsu15I	ATCGAT	1 cut(s)	357
BsuRI	GGCC	1 cut(s)	294
BsuTUI	ATCGAT	1 cut(s)	357
BtgI	CCRYGG	3 cut(s)	152, 822, 960
BtsCI	GGATG	4 cut(s)	90, 292, 457, 589
BtsI	GCAGTG	1 cut(s)	570
BtsIMutI	CAGTG	2 cut(s)	64, 570
Cac8I	GCNNGC	3 cut(s)	159, 403, 587
ClaI	ATCGAT	1 cut(s)	357
Csp6I	GTAC	1 cut(s)	935
CviAII	CATG	3 cut(s)	153, 823, 910
CviQI	GTAC	1 cut(s)	935
DdeI	CTNAG	2 cut(s)	8, 444
DpnI	GATC	3 cut(s)	63, 569, 684
DpnII	GATC	3 cut(s)	61, 567, 682
DraI	TTTAAA	1 cut(s)	715
EaeI	YGGCCR	1 cut(s)	292
Eam1104I	CTCTTC	2 cut(s)	585, 702
EarI	CTCTTC	2 cut(s)	585, 702
Eco130I	CCWWGG	3 cut(s)	152, 822, 982
Eco57I	CTGAAG	2 cut(s)	294, 936
EcoNI	CCTNNNNNAGG	1 cut(s)	981
EcoRI	GAATTC	1 cut(s)	810
EcoRII	CCWGG	2 cut(s)	614, 805
EcoT14I	CCWWGG	3 cut(s)	152, 822, 982
ErhI	CCWWGG	3 cut(s)	152, 822, 982
Esp3I	CGTCTC	1 cut(s)	273
FaeI	CATG	3 cut(s)	156, 826, 913
FatI	CATG	3 cut(s)	152, 822, 909
FauI	CCCGC	1 cut(s)	59
FauNDI	CATATG	1 cut(s)	252
FbaI	TGATCA	1 cut(s)	567
FokI	GGATG	4 cut(s)	97, 299, 444, 576
FspBI	CTAG	1 cut(s)	197
GsuI	CTGGAG	1 cut(s)	579
HaeIII	GGCC	1 cut(s)	294
HapII	CCGG	1 cut(s)	663
Hin1II	CATG	3 cut(s)	156, 826, 913
HinfI	GANTC	1 cut(s)	575
HpaII	CCGG	1 cut(s)	663
HphI	GGTGA	1 cut(s)	152
Hpy166II	GTNNAC	3 cut(s)	111, 310, 435
Hpy188I	TCNGA	4 cut(s)	9, 274, 445, 506
Hpy188III	TCNNGA	2 cut(s)	245, 833
Hpy8I	GTNNAC	3 cut(s)	111, 310, 435
HpyAV	CCTTC	4 cut(s)	65, 269, 553, 672
HpyCH4III	ACNGT	6 cut(s)	59, 203, 216, 343, 647, 934
HpyCH4IV	ACGT	1 cut(s)	312
HpyCH4V	TGCA	4 cut(s)	481, 589, 635, 890
HpyF10VI	GCNNNNNNNGC	1 cut(s)	454
HpyF3I	CTNAG	2 cut(s)	8, 444
HpySE526I	ACGT	1 cut(s)	312
Hsp92II	CATG	3 cut(s)	156, 826, 913
Ksp22I	TGATCA	1 cut(s)	567
Kzo9I	GATC	3 cut(s)	61, 567, 682
LmnI	GCTCC	1 cut(s)	94
LweI	GCATC	3 cut(s)	466, 598, 622
MaeI	CTAG	1 cut(s)	197
MaeII	ACGT	1 cut(s)	312
MaeIII	GTNAC	2 cut(s)	140, 647
MalI	GATC	3 cut(s)	63, 569, 684
MboI	GATC	3 cut(s)	61, 567, 682
MboII	GAAGA	5 cut(s)	341, 484, 572, 719, 929
MflI	RGATCY	1 cut(s)	682
MlsI	TGGCCA	1 cut(s)	294
MluCI	AATT	7 cut(s)	224, 476, 535, 672, 810, 850, 855
MluNI	TGGCCA	1 cut(s)	294
MlyI	GAGTC	1 cut(s)	584
MmeI	TCCRAC	1 cut(s)	484
Mox20I	TGGCCA	1 cut(s)	294
MscI	TGGCCA	1 cut(s)	294
MseI	TTAA	6 cut(s)	119, 177, 714, 854, 954, 988
MslI	CAYNNNNRTG	1 cut(s)	462
Msp20I	TGGCCA	1 cut(s)	294
MspI	CCGG	1 cut(s)	663
MspR9I	CCNGG	2 cut(s)	616, 807
MssI	GTTTAAAC	1 cut(s)	715
MvaI	CCWGG	2 cut(s)	616, 807
MvnI	CGCG	1 cut(s)	66
MwoI	GCNNNNNNNGC	1 cut(s)	454
NcoI	CCATGG	2 cut(s)	152, 822
NdeI	CATATG	1 cut(s)	252
NdeII	GATC	3 cut(s)	61, 567, 682
NlaIII	CATG	3 cut(s)	156, 826, 913
NlaIV	GGNNCC	2 cut(s)	406, 684
NmuCI	GTSAC	1 cut(s)	140
PflFI	GACNNNGTC	1 cut(s)	439
PfoI	TCCNGGA	1 cut(s)	805
PleI	GAGTC	1 cut(s)	583
PmeI	GTTTAAAC	1 cut(s)	715
PpsI	GAGTC	1 cut(s)	583
PsiI	TTATAA	1 cut(s)	750
Psp6I	CCWGG	2 cut(s)	614, 805
PspGI	CCWGG	2 cut(s)	614, 805
PspN4I	GGNNCC	2 cut(s)	406, 684
PsuI	RGATCY	1 cut(s)	682
PsyI	GACNNNGTC	1 cut(s)	439
RsaI	GTAC	1 cut(s)	936
RsaNI	GTAC	1 cut(s)	935
RseI	CAYNNNNRTG	1 cut(s)	462
SaqAI	TTAA	6 cut(s)	119, 177, 714, 854, 954, 988
Sau3AI	GATC	3 cut(s)	61, 567, 682
SchI	GAGTC	1 cut(s)	584
ScrFI	CCNGG	2 cut(s)	616, 807
SetI	ASST	8 cut(s)	43, 76, 99, 193, 315, 450, 492, 988
SfaNI	GCATC	3 cut(s)	466, 598, 622
SfcI	CTRYAG	1 cut(s)	102
SmiMI	CAYNNNNRTG	1 cut(s)	462
Sse9I	AATT	7 cut(s)	224, 476, 535, 672, 810, 850, 855
SsiI	CCGC	1 cut(s)	66
SspMI	CTAG	1 cut(s)	197
StyD4I	CCNGG	2 cut(s)	614, 805
StyI	CCWWGG	3 cut(s)	152, 822, 982
TaaI	ACNGT	6 cut(s)	59, 203, 216, 343, 647, 934
TaiI	ACGT	1 cut(s)	315
TaqI	TCGA	2 cut(s)	76, 357
TaqII	GACCGA	1 cut(s)	335
TasI	AATT	7 cut(s)	224, 476, 535, 672, 810, 850, 855
TatI	WGTACW	1 cut(s)	934
Tru1I	TTAA	6 cut(s)	119, 177, 714, 854, 954, 988
Tru9I	TTAA	6 cut(s)	119, 177, 714, 854, 954, 988
TscAI	CASTG	2 cut(s)	64, 570
TseFI	GTSAC	1 cut(s)	140
Tsp45I	GTSAC	1 cut(s)	140
TspDTI	ATGAA	3 cut(s)	237, 485, 746
TspRI	CASTG	2 cut(s)	64, 570
Tth111I	GACNNNGTC	1 cut(s)	439
XagI	CCTNNNNNAGG	1 cut(s)	981
XapI	RAATTY	3 cut(s)	224, 810, 850
XcmI	CCANNNNNNNNNTGG	1 cut(s)	159
XspI	CTAG	1 cut(s)	197

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.