Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0006152

Physical Location & Seq

Genomic Coordinates Forward (+)

64798287 .. 64803301

Gene Structure 5015 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G036880.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2409 bp

ATGGAATTTGATCTGAACCATGCAGTAGTGGGTGATGTGGTGGAGAAGAATGCATATTGTAATGGGGATTGTGACAAGGGTGGTTGTGCTCATTGTTTGTCCTCTTCAACTTCTTCTTGTTCTTCAAATTCATCATCAGTTCCTGTGATTTCTTCAATCTATTTGGAGCTTTGGCATGCTTGTGCTGGTCCACTCATTTCACTACCCAAGAAAGGAAATGTGGTTGTCTACTTCCCACAAGGTCACTTGGAACAGGTTGCCTCATCATCCCCTCCTTTCTCATCCATGGAGAAGCCTCACTTTGATCTCCAGCCACAGATCTTCTGCAAGGTTGTCAATGTCCAGCTGCTTGCTAACAAGGAGAATGATGAGGTCTATACACATGTTACTTTGCTTCCTCAGGCAGAGTCGGCAGGAATGAATTTGGAAGGCAAAGAGCTTGAAGAGTTGGGGGTGGATGAGGGGGATGGAGGATCACCTACAAAATCAACCCCTCACATGTTTTGCAAAACACTTACAGCTTCTGATACCAGTACCCATGGAGGGTTCTCTGTTCCTCGCAGAGCTGCAGAAGACTGTTTCCCTCCTCTGGATTATAAGCAGCAAAGGCCCTCTCAAGAGCTTGTTGCAAAGGACCTACATGGTGTAGAATGGAGGTTTCGACATATTTATAGAGGTCAGCCACGGCGGCATCTGCTCACCACAGGGTGGAGTATTTTTATAAGCCAAAAGAATCTTGTCTCAGGGGATGCTGTGCTCTTTCTGAGGGGTGAAAATGGAGAGCTTAGGTTGGGCATTAGAAGAGCTGGTCGGCCTAGAAATGGCCTTCCTGATTCAGTTATCGGCAACCAGAATTCTTATTCTAGTGTTCTTTCCCCAGTTGCTAATGCTGTATCCACCAAGAGCATGTTCCATGTATTCTACAGTCCAAGGGCAAGCCATGCGGAGTTTGTTATTCCCTACCAAAAATATGTTAGAAGCATTGCTACTCCGGTGACCATGGGGACAAGATTCAAAATGAGATTTGATAGGGATGATTCACCAGAAAGAAGGTGCAGTGGTGTAGTGACCGGCATCAGTGACTTGGATCCCTATCGATGGCCAAAATCAAAATGGAGATGCTTAATGGTGAGATGGGATGACGATATAGGAAATGATCATCAAGAACGAGTCTCTTTGTGGGAGATTGATCCTTCTGTTTCTCTCCCACCTTTGAGCATTCAGTCTTCTCCAAGATTGAAGAAACTGCGGACAAGTCTGCAGGCATTCCCACCTAACCACTCCATTCCTGCTGGAAGTTGTGGGCTTATGGACTTTGAGGAGACAGTTAAATCCTCTAAGGTCTTGCAAGGTCAAGAAAATATGGGTTTCATATCACCCCACTATGGATGTGATACATTAAAGAGCCCTGTGGATTTTGAGATGCAGCCTTCAGCACATCAAAATCTTGCATCACATGTATCCCAGAAGACTACTATTGGCGAGTTCATGAGAGCTCACCACACCAGTTACACAGGATTTGCGGAATCTGACAGATTTCCGAAAGTCTTGCAAGGTCAAGAAATATGCCCGTTGAGATCTTTGACAGGAAAAGCAAATTTCAATCTGGGCAATTGGGAGTCCAATCTTGGTAGCACATCTTTCAACAGTTATCAGGCACCCAAACCGAATATGTTCACTCTGGGTTCTGAATCACTTCTAAACATGTATTTTCCTTATGGTGACATTCACAAGGTTGGCCAAGATCCCATGATATGCTCTAATACTACCAACTTTCCCAGAGAGAGTATCAAAGCGAACCCATATTCTATTCAGATGGGAGTTACAAGAAATGAAGTTGGAAGGCCAAAGAAACCTAGTGAGCATCAGCCACAGGAAAGTACCTCTGCTCTTCCTACTTTAGTGACAAATATAAAAAGTCCAAAAGAGGTCAGCGCTGATGGAACTGCTAATGGATGTAAACTTTTCGGTTTTTCCTTATCGGGGGAAACTCCCACACTAAGTCAGAGTTCTAGTAAGAGGAGTTGTACAAAGGTTCACAAGCAAGGCAGCTTAGTGGGAAGAGCCATTGATCTCTCAAAACTGAATGGCTATGGTGACCTGCTGAGCGAACTAGAGCGGCTATTTAGCATGGAAGGCCTTCTACGAGATCCTAATAAAGGATGGCGGATCTTGTATACTGACAGTGAGAATGATGTCATGGTTGTAGGGGATGACCCATGGCATGAGTTCTGCAACGTGGTTTCCAAAATTCACATATACACCCAGGAAGAAGTGGAGAAGATGACAATCGGAATGATCAGTGATGATACCCAAAGTTGTTTGGAACAAGCTCCACCTATGCTGGAAGTGTCAAAGTCCTCATCAGTTGGGCAGCCGGATTCTTCTCCAACAGCAATTAGGGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001708 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009791 GO:0009889 GO:0009987 GO:0010050 GO:0010158 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045165 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AUX_IAA Auxin_resp B3

Protein Analysis

802

Amino Acids

88.68

Weight (kDa)

6.42

Isoelectric Point (pI)

49.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	168 - 269	3.4e-22	B3 DNA binding domain
ARF_AD	PF06507	317 - 399	5.8e-33	Auxin response factor ancillary domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006152)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60450 AT5G60450
fragaria_vesca	FvH4_3g32860 FvH4_3g32860 FvH4_3g32860 FvH4_3g32860 FvH4_3g32860
malus_domestica	MD03G1116000.v1.1 MD11G1132400.v1.1
prunus_persica	Prupe.6G097700_v2.0.a1 Prupe.6G097700_v2.0.a1 Prupe.6G097700_v2.0.a1 Prupe.6G097700_v2.0.a1 Prupe.6G097700_v2.0.a1
pyrus_communis	pycom11g10920
rosa_chinensis	RchiOBHm_Chr5g0060011
rosa_laevigata	RLG00000035338
rosa_multiflora	Rmu_sc0000493.1_g000006
rosa_roxburghii	Rroxscaffold_1G00020650
rosa_rugosa	Rorug05G0327400 Rorug05G0327500 Rorug05G0327600
rosa_samantha	Rh5AG391400 Rh5BG404000 Rh5CG427800 Rh5DG419600
rosa_wichuraiana	Rw5G036880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	597, 722
Acc36I	ACCTGC	1 cut(s)	2109
AccB1I	GGYRCC	1 cut(s)	1657
AccB7I	CCANNNNNTGG	1 cut(s)	708
AccBSI	CCGCTC	1 cut(s)	2119
AccI	GTMKAC	2 cut(s)	228, 2177
AciI	CCGC	6 cut(s)	688, 944, 1249, 1523, 2119, 2167
AclWI	GGATC	7 cut(s)	481, 1082, 1095, 1184, 1739, 2144, 2177
AcoI	YGGCCR	2 cut(s)	1100, 1738
AcsI	RAATTY	6 cut(s)	5, 127, 421, 853, 1597, 2250
AcuI	CTGAAG	1 cut(s)	1416
AdeI	CACNNNGTG	1 cut(s)	708
AfaI	GTAC	3 cut(s)	535, 1882, 2029
AfeI	AGCGCT	1 cut(s)	1936
AfiI	CCNNNNNNNGG	9 cut(s)	212, 543, 589, 708, 821, 1098, 1385, 1983, 2159
AflIII	ACRYGT	4 cut(s)	382, 498, 1456, 1704
AgsI	TTSAA	8 cut(s)	108, 126, 156, 443, 1015, 1240, 1603, 1645
AjnI	CCWGG	1 cut(s)	2265
AjuI	GAANNNNNNNTTGG	2 cut(s)	893, 925
Alw21I	GWGCWC	3 cut(s)	91, 759, 1498
Alw26I	GTCTC	3 cut(s)	745, 1177, 1316
AlwI	GGATC	7 cut(s)	481, 1082, 1095, 1184, 1739, 2144, 2177
AlwNI	CAGNNNCTG	2 cut(s)	143, 524
Aor51HI	AGCGCT	1 cut(s)	1936
AoxI	GGCC	7 cut(s)	608, 812, 823, 1100, 1738, 1844, 2137
ApeKI	GCWGC	6 cut(s)	346, 566, 601, 1426, 2049, 2374
ApoI	RAATTY	6 cut(s)	5, 127, 421, 853, 1597, 2250
Asp700I	GAANNNNTTC	3 cut(s)	1673, 1695, 2139
AspLEI	GCGC	1 cut(s)	1937
AspS9I	GGNCC	3 cut(s)	188, 609, 634
AvaII	GGWCC	2 cut(s)	188, 634
AxyI	CCTNAGG	1 cut(s)	399
BalI	TGGCCA	2 cut(s)	1102, 1740
BamHI	GGATCC	1 cut(s)	1087
BanI	GGYRCC	1 cut(s)	1657
BanII	GRGCYC	2 cut(s)	1409, 1498
BarI	GAAGNNNNNNTAC	4 cut(s)	970, 1002, 2127, 2159
BbsI	GAAGAC	3 cut(s)	579, 1218, 1475
Bbv12I	GWGCWC	3 cut(s)	91, 759, 1498
BbvI	GCAGC	6 cut(s)	333, 553, 613, 1438, 2061, 2386
BccI	CCATC	6 cut(s)	461, 1092, 1128, 1810, 1934, 2157
BceAI	ACGGC	1 cut(s)	701
BcgI	CGANNNNNNTGC	2 cut(s)	1531, 1565
BciT130I	CCWGG	1 cut(s)	2267
BciVI	GTATCC	2 cut(s)	904, 1471
BclI	TGATCA	2 cut(s)	1156, 2298
BcoDI	GTCTC	3 cut(s)	745, 1177, 1316
BfaI	CTAG	5 cut(s)	816, 864, 1857, 2013, 2114
BfmI	CTRYAG	3 cut(s)	567, 922, 1259
BfoI	RGCGCY	1 cut(s)	1938
BfuAI	ACCTGC	1 cut(s)	2109
BfuI	GTATCC	2 cut(s)	904, 1471
BglI	GCCNNNNNGGC	1 cut(s)	688
BglII	AGATCT	2 cut(s)	318, 1577
BisI	GCNGC	8 cut(s)	347, 567, 602, 689, 1427, 2050, 2120, 2375
BlpI	GCTNAGC	1 cut(s)	2105
BlsI	GCNGC	8 cut(s)	348, 568, 603, 690, 1428, 2051, 2121, 2376
Bme1390I	CCNGG	1 cut(s)	2267
Bme18I	GGWCC	2 cut(s)	188, 634
BmgT120I	GGNCC	3 cut(s)	188, 609, 634
BmiI	GGNNCC	2 cut(s)	1089, 1659
BmrFI	CCNGG	1 cut(s)	2267
BmrI	ACTGGG	1 cut(s)	872
BmsI	GCATC	7 cut(s)	700, 739, 1083, 1109, 1413, 1460, 1873
BmuI	ACTGGG	1 cut(s)	872
BpiI	GAAGAC	3 cut(s)	579, 1218, 1475
BpmI	CTGGAG	1 cut(s)	293
Bpu10I	CCTNAGC	1 cut(s)	785
Bpu1102I	GCTNAGC	1 cut(s)	2105
BpuEI	CTTGAG	1 cut(s)	600
Bsa29I	ATCGAT	1 cut(s)	1096
BsaBI	GATNNNNATC	2 cut(s)	1092, 2288
BsaJI	CCNNGG	7 cut(s)	285, 538, 683, 929, 999, 2219, 2265
BsaWI	WCCGGW	1 cut(s)	991
Bsc4I	CCNNNNNNNGG	9 cut(s)	212, 543, 589, 708, 821, 1098, 1385, 1983, 2159
Bse118I	RCCGGY	1 cut(s)	1070
Bse1I	ACTGG	3 cut(s)	531, 878, 1506
Bse21I	CCTNAGG	1 cut(s)	399
Bse3DI	GCAATG	1 cut(s)	981
Bse8I	GATNNNNATC	2 cut(s)	1092, 2288
BseBI	CCWGG	1 cut(s)	2267
BseCI	ATCGAT	1 cut(s)	1096
BseDI	CCNNGG	7 cut(s)	285, 538, 683, 929, 999, 2219, 2265
BseJI	GATNNNNATC	2 cut(s)	1092, 2288
BseLI	CCNNNNNNNGG	9 cut(s)	212, 543, 589, 708, 821, 1098, 1385, 1983, 2159
BseMI	GCAATG	1 cut(s)	981
BseMII	CTCAG	4 cut(s)	413, 755, 756, 2096
BseNI	ACTGG	3 cut(s)	531, 878, 1506
BseRI	GAGGAG	3 cut(s)	576, 1334, 2035
BseXI	GCAGC	6 cut(s)	333, 553, 613, 1438, 2061, 2386
BsgI	GTGCAG	1 cut(s)	1075
BshFI	GGCC	7 cut(s)	610, 814, 825, 1102, 1740, 1846, 2139
BshNI	GGYRCC	1 cut(s)	1657
BshVI	ATCGAT	1 cut(s)	1096
BsiHKAI	GWGCWC	3 cut(s)	91, 759, 1498
BsiSI	CCGG	3 cut(s)	992, 1071, 2378
BslFI	GGGAC	1 cut(s)	1018
BslI	CCNNNNNNNGG	9 cut(s)	212, 543, 589, 708, 821, 1098, 1385, 1983, 2159
BsmAI	GTCTC	3 cut(s)	745, 1177, 1316
BsmFI	GGGAC	1 cut(s)	1018
BsmI	GAATGC	3 cut(s)	55, 1218, 1265
BsnI	GGCC	7 cut(s)	610, 814, 825, 1102, 1740, 1846, 2139
Bsp1286I	GDGCHC	4 cut(s)	91, 759, 1409, 1498
Bsp1407I	TGTACA	1 cut(s)	2027
Bsp1720I	GCTNAGC	1 cut(s)	2105
Bsp19I	CCATGG	4 cut(s)	285, 538, 999, 2219
BspACI	CCGC	6 cut(s)	688, 944, 1249, 1523, 2119, 2167
BspANI	GGCC	7 cut(s)	610, 814, 825, 1102, 1740, 1846, 2139
BspCNI	CTCAG	4 cut(s)	412, 755, 756, 2097
BspDI	ATCGAT	1 cut(s)	1096
BspHI	TCATGA	1 cut(s)	1488
BspLI	GGNNCC	2 cut(s)	1089, 1659
BspMAI	CTGCAG	2 cut(s)	571, 1263
BspMI	ACCTGC	1 cut(s)	2109
BspPI	GGATC	7 cut(s)	481, 1082, 1095, 1184, 1739, 2144, 2177
BspQI	GCTCTTC	3 cut(s)	796, 1896, 2056
BspT107I	GGYRCC	1 cut(s)	1657
BsrBI	CCGCTC	1 cut(s)	2119
BsrDI	GCAATG	1 cut(s)	981
BsrFI	RCCGGY	1 cut(s)	1070
BsrGI	TGTACA	1 cut(s)	2027
BsrI	ACTGG	3 cut(s)	531, 878, 1506
BssAI	RCCGGY	1 cut(s)	1070
BssECI	CCNNGG	7 cut(s)	285, 538, 683, 929, 999, 2219, 2265
BssNAI	GTATAC	1 cut(s)	2178
BssT1I	CCWWGG	5 cut(s)	285, 538, 929, 999, 2219
Bst1107I	GTATAC	1 cut(s)	2178
Bst2UI	CCWGG	1 cut(s)	2267
Bst4CI	ACNGT	5 cut(s)	578, 926, 1327, 1649, 2186
Bst6I	CTCTTC	5 cut(s)	109, 438, 796, 1896, 2056
BstAPI	GCANNNNNTGC	1 cut(s)	941
BstAUI	TGTACA	1 cut(s)	2027
BstC8I	GCNNGC	4 cut(s)	177, 351, 937, 1263
BstDEI	CTNAG	8 cut(s)	399, 742, 764, 785, 1338, 2000, 2053, 2105
BstDSI	CCRYGG	5 cut(s)	285, 538, 683, 999, 2219
BstEII	GGTNACC	2 cut(s)	994, 2096
BstENI	CCTNNNNNAGG	1 cut(s)	2157
BstH2I	RGCGCY	1 cut(s)	1938
BstHHI	GCGC	1 cut(s)	1937
BstMAI	GTCTC	3 cut(s)	745, 1177, 1316
BstMWI	GCNNNNNNNGC	6 cut(s)	410, 607, 688, 694, 941, 2136
BstNI	CCWGG	1 cut(s)	2267
BstNSI	RCATGY	6 cut(s)	179, 386, 502, 910, 1460, 1708
BstPI	GGTNACC	2 cut(s)	994, 2096
BstSCI	CCNGG	1 cut(s)	2265
BstSFI	CTRYAG	3 cut(s)	567, 922, 1259
BstV1I	GCAGC	6 cut(s)	333, 553, 613, 1438, 2061, 2386
BstV2I	GAAGAC	3 cut(s)	579, 1218, 1475
BstX2I	RGATCY	6 cut(s)	318, 1087, 1577, 1744, 2149, 2169
BstYI	RGATCY	6 cut(s)	318, 1087, 1577, 1744, 2149, 2169
BstZ17I	GTATAC	1 cut(s)	2178
Bsu15I	ATCGAT	1 cut(s)	1096
Bsu36I	CCTNAGG	1 cut(s)	399
BsuI	GTATCC	2 cut(s)	904, 1471
BsuRI	GGCC	7 cut(s)	610, 814, 825, 1102, 1740, 1846, 2139
BsuTUI	ATCGAT	1 cut(s)	1096
BtgI	CCRYGG	5 cut(s)	285, 538, 683, 999, 2219
BtsI	GCAGTG	1 cut(s)	1063
BtsIMutI	CAGTG	4 cut(s)	1063, 1084, 2191, 2308
BveI	ACCTGC	1 cut(s)	2109
Cac8I	GCNNGC	4 cut(s)	177, 351, 937, 1263
CaiI	CAGNNNCTG	2 cut(s)	143, 524
CciI	TCATGA	1 cut(s)	1488
CfoI	GCGC	1 cut(s)	1937
Cfr10I	RCCGGY	1 cut(s)	1070
Cfr13I	GGNCC	3 cut(s)	188, 609, 634
ClaI	ATCGAT	1 cut(s)	1096
Csp6I	GTAC	3 cut(s)	534, 1881, 2028
CviQI	GTAC	3 cut(s)	534, 1881, 2028
DdeI	CTNAG	8 cut(s)	399, 742, 764, 785, 1338, 2000, 2053, 2105
DraIII	CACNNNGTG	1 cut(s)	708
EaeI	YGGCCR	2 cut(s)	1100, 1738
Eam1104I	CTCTTC	5 cut(s)	109, 438, 796, 1896, 2056
EarI	CTCTTC	5 cut(s)	109, 438, 796, 1896, 2056
EciI	GGCGGA	1 cut(s)	2182
Ecl136II	GAGCTC	1 cut(s)	1496
Eco130I	CCWWGG	5 cut(s)	285, 538, 929, 999, 2219
Eco147I	AGGCCT	1 cut(s)	2139
Eco24I	GRGCYC	2 cut(s)	1409, 1498
Eco47I	GGWCC	2 cut(s)	188, 634
Eco47III	AGCGCT	1 cut(s)	1936
Eco53kI	GAGCTC	1 cut(s)	1496
Eco57I	CTGAAG	1 cut(s)	1416
Eco81I	CCTNAGG	1 cut(s)	399
Eco91I	GGTNACC	2 cut(s)	994, 2096
EcoICRI	GAGCTC	1 cut(s)	1496
EcoNI	CCTNNNNNAGG	1 cut(s)	2157
EcoO109I	RGGNCCY	2 cut(s)	609, 634
EcoO65I	GGTNACC	2 cut(s)	994, 2096
EcoRI	GAATTC	1 cut(s)	853
EcoRII	CCWGG	1 cut(s)	2265
EcoT14I	CCWWGG	5 cut(s)	285, 538, 929, 999, 2219
EcoT22I	ATGCAT	1 cut(s)	55
EcoT38I	GRGCYC	2 cut(s)	1409, 1498
ErhI	CCWWGG	5 cut(s)	285, 538, 929, 999, 2219
FalI	AAGNNNNNCTT	2 cut(s)	284, 316
FaqI	GGGAC	1 cut(s)	1018
FbaI	TGATCA	2 cut(s)	1156, 2298
FblI	GTMKAC	2 cut(s)	228, 2177
Fnu4HI	GCNGC	8 cut(s)	347, 567, 602, 689, 1427, 2050, 2120, 2375
FriOI	GRGCYC	2 cut(s)	1409, 1498
Fsp4HI	GCNGC	8 cut(s)	347, 567, 602, 689, 1427, 2050, 2120, 2375
FspBI	CTAG	5 cut(s)	816, 864, 1857, 2013, 2114
GlaI	GCGC	1 cut(s)	1936
GluI	GCNGC	8 cut(s)	347, 567, 602, 689, 1427, 2050, 2120, 2375
GsuI	CTGGAG	1 cut(s)	293
HaeII	RGCGCY	1 cut(s)	1938
HaeIII	GGCC	7 cut(s)	610, 814, 825, 1102, 1740, 1846, 2139
HapII	CCGG	3 cut(s)	992, 1071, 2378
HhaI	GCGC	1 cut(s)	1937
Hin6I	GCGC	1 cut(s)	1935
HinP1I	GCGC	1 cut(s)	1935
HpaII	CCGG	3 cut(s)	992, 1071, 2378
Hpy166II	GTNNAC	6 cut(s)	191, 229, 1677, 1961, 2038, 2178
Hpy188III	TCNNGA	7 cut(s)	590, 617, 830, 1163, 1355, 1489, 1559
Hpy8I	GTNNAC	6 cut(s)	191, 229, 1677, 1961, 2038, 2178
HpyAV	CCTTC	8 cut(s)	422, 836, 1044, 1203, 1440, 1836, 2129, 2150
HpyCH4III	ACNGT	5 cut(s)	578, 926, 1327, 1649, 2186
HpyCH4IV	ACGT	1 cut(s)	2238
HpyF10VI	GCNNNNNNNGC	6 cut(s)	410, 607, 688, 694, 941, 2136
HpyF3I	CTNAG	8 cut(s)	399, 742, 764, 785, 1338, 2000, 2053, 2105
HpySE526I	ACGT	1 cut(s)	2238
HspAI	GCGC	1 cut(s)	1935
Ksp22I	TGATCA	2 cut(s)	1156, 2298
LguI	GCTCTTC	3 cut(s)	796, 1896, 2056
LmnI	GCTCC	2 cut(s)	166, 2338
Lsp1109I	GCAGC	6 cut(s)	333, 553, 613, 1438, 2061, 2386
LweI	GCATC	7 cut(s)	700, 739, 1083, 1109, 1413, 1460, 1873
MaeI	CTAG	5 cut(s)	816, 864, 1857, 2013, 2114
MaeII	ACGT	1 cut(s)	2238
MbiI	CCGCTC	1 cut(s)	2119
MfeI	CAATTG	1 cut(s)	1612
MflI	RGATCY	6 cut(s)	318, 1087, 1577, 1744, 2149, 2169
MhlI	GDGCHC	4 cut(s)	91, 759, 1409, 1498
MlsI	TGGCCA	2 cut(s)	1102, 1740
MluCI	AATT	8 cut(s)	5, 127, 421, 853, 1597, 1612, 2250, 2397
MluNI	TGGCCA	2 cut(s)	1102, 1740
MlyI	GAGTC	3 cut(s)	416, 1179, 1628
MmeI	TCCRAC	1 cut(s)	1819
Mox20I	TGGCCA	2 cut(s)	1102, 1740
Mph1103I	ATGCAT	1 cut(s)	55
MroXI	GAANNNNTTC	3 cut(s)	1673, 1695, 2139
MscI	TGGCCA	2 cut(s)	1102, 1740
MseI	TTAA	3 cut(s)	1124, 1329, 1400
MslI	CAYNNNNRTG	1 cut(s)	180
Msp20I	TGGCCA	2 cut(s)	1102, 1740
MspA1I	CMGCKG	1 cut(s)	346
MspI	CCGG	3 cut(s)	992, 1071, 2378
MspR9I	CCNGG	1 cut(s)	2267
MunI	CAATTG	1 cut(s)	1612
Mva1269I	GAATGC	3 cut(s)	55, 1218, 1265
MvaI	CCWGG	1 cut(s)	2267
MwoI	GCNNNNNNNGC	6 cut(s)	410, 607, 688, 694, 941, 2136
NcoI	CCATGG	4 cut(s)	285, 538, 999, 2219
NlaIV	GGNNCC	2 cut(s)	1089, 1659
NmuCI	GTSAC	8 cut(s)	71, 242, 994, 1066, 1079, 1721, 1903, 2096
NsiI	ATGCAT	1 cut(s)	55
NspI	RCATGY	6 cut(s)	179, 386, 502, 910, 1460, 1708
PaeI	GCATGC	1 cut(s)	179
PagI	TCATGA	1 cut(s)	1488
PceI	AGGCCT	1 cut(s)	2139
PciI	ACATGT	4 cut(s)	382, 498, 1456, 1704
PciSI	GCTCTTC	3 cut(s)	796, 1896, 2056
PctI	GAATGC	3 cut(s)	55, 1218, 1265
PdmI	GAANNNNTTC	3 cut(s)	1673, 1695, 2139
PfeI	GAWTC	7 cut(s)	733, 833, 1011, 1037, 1526, 1691, 2381
PflMI	CCANNNNNTGG	1 cut(s)	708
PkrI	GCNGC	8 cut(s)	348, 568, 603, 690, 1428, 2051, 2121, 2376
PleI	GAGTC	3 cut(s)	415, 1178, 1627
PpsI	GAGTC	3 cut(s)	415, 1178, 1627
PpuMI	RGGWCCY	1 cut(s)	634
PscI	ACATGT	4 cut(s)	382, 498, 1456, 1704
PsiI	TTATAA	2 cut(s)	597, 722
Psp124BI	GAGCTC	1 cut(s)	1498
Psp5II	RGGWCCY	1 cut(s)	634
Psp6I	CCWGG	1 cut(s)	2265
PspEI	GGTNACC	2 cut(s)	994, 2096
PspGI	CCWGG	1 cut(s)	2265
PspN4I	GGNNCC	2 cut(s)	1089, 1659
PspPI	GGNCC	3 cut(s)	188, 609, 634
PspPPI	RGGWCCY	1 cut(s)	634
PstI	CTGCAG	2 cut(s)	571, 1263
PstNI	CAGNNNCTG	2 cut(s)	143, 524
PsuI	RGATCY	6 cut(s)	318, 1087, 1577, 1744, 2149, 2169
PvuII	CAGCTG	1 cut(s)	346
RsaI	GTAC	3 cut(s)	535, 1882, 2029
RsaNI	GTAC	3 cut(s)	534, 1881, 2028
RseI	CAYNNNNRTG	1 cut(s)	180
SacI	GAGCTC	1 cut(s)	1498
SapI	GCTCTTC	3 cut(s)	796, 1896, 2056
SaqAI	TTAA	3 cut(s)	1124, 1329, 1400
SatI	GCNGC	8 cut(s)	347, 567, 602, 689, 1427, 2050, 2120, 2375
Sau96I	GGNCC	3 cut(s)	188, 609, 634
SchI	GAGTC	3 cut(s)	416, 1179, 1628
ScrFI	CCNGG	1 cut(s)	2267
SduI	GDGCHC	4 cut(s)	91, 759, 1409, 1498
SfaNI	GCATC	7 cut(s)	700, 739, 1083, 1109, 1413, 1460, 1873
SfcI	CTRYAG	3 cut(s)	567, 922, 1259
SinI	GGWCC	2 cut(s)	188, 634
SmiMI	CAYNNNNRTG	1 cut(s)	180
SmlI	CTYRAG	1 cut(s)	615
SmoI	CTYRAG	1 cut(s)	615
SphI	GCATGC	1 cut(s)	179
Sse9I	AATT	8 cut(s)	5, 127, 421, 853, 1597, 1612, 2250, 2397
SseBI	AGGCCT	1 cut(s)	2139
SsiI	CCGC	6 cut(s)	688, 944, 1249, 1523, 2119, 2167
SspMI	CTAG	5 cut(s)	816, 864, 1857, 2013, 2114
SstI	GAGCTC	1 cut(s)	1498
StuI	AGGCCT	1 cut(s)	2139
StyD4I	CCNGG	1 cut(s)	2265
StyI	CCWWGG	5 cut(s)	285, 538, 929, 999, 2219
TaaI	ACNGT	5 cut(s)	578, 926, 1327, 1649, 2186
TaiI	ACGT	1 cut(s)	2241
TaqI	TCGA	2 cut(s)	661, 1096
TasI	AATT	8 cut(s)	5, 127, 421, 853, 1597, 1612, 2250, 2397
TatI	WGTACW	1 cut(s)	2027
TauI	GCSGC	2 cut(s)	691, 2122
TfiI	GAWTC	7 cut(s)	733, 833, 1011, 1037, 1526, 1691, 2381
Tru1I	TTAA	3 cut(s)	1124, 1329, 1400
Tru9I	TTAA	3 cut(s)	1124, 1329, 1400
TscAI	CASTG	4 cut(s)	1063, 1084, 2191, 2308
TseFI	GTSAC	8 cut(s)	71, 242, 994, 1066, 1079, 1721, 1903, 2096
TseI	GCWGC	6 cut(s)	346, 566, 601, 1426, 2049, 2374
Tsp45I	GTSAC	8 cut(s)	71, 242, 994, 1066, 1079, 1721, 1903, 2096
TspDTI	ATGAA	5 cut(s)	120, 434, 1360, 1477, 1848
TspRI	CASTG	4 cut(s)	1063, 1084, 2191, 2308
Van91I	CCANNNNNTGG	1 cut(s)	708
VpaK11BI	GGWCC	2 cut(s)	188, 634
XagI	CCTNNNNNAGG	1 cut(s)	2157
XapI	RAATTY	6 cut(s)	5, 127, 421, 853, 1597, 2250
XceI	RCATGY	6 cut(s)	179, 386, 502, 910, 1460, 1708
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1110
XmiI	GTMKAC	2 cut(s)	228, 2177
XmnI	GAANNNNTTC	3 cut(s)	1673, 1695, 2139
XspI	CTAG	5 cut(s)	816, 864, 1857, 2013, 2114
Zsp2I	ATGCAT	1 cut(s)	55

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.