Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0006152

Physical Location & Seq

Genomic Coordinates Reverse (-)

25069083 .. 25076686

Gene Structure 7604 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00020650.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2448 bp

ATGTGTGGGGCTAGAGAAGCAGCGCCAAAGGCGCAGGCCTCCTGCATCATCTTTTTCCCCTCTGATCGAATCAGAACCTCCCTCTCACTCGCCCTTGCCTCTCCGTCACACGACTCGGCACCTGCAATGTACAGAGCATGCTCATCACGCGCAGTAAATGGGAGTGGGGAATCTGGGTTGGTTGTTAATGATAAAAGAGTAGTGGGTGATGTGGTGGAGAAGAATGCATATTGTAATGGGGATTGTGACAAGGGTGGTTGTGCTCATTGTTTGTCCTCTTCAACTTCTTCTTGTTCTTCAAATTCATCATCAGTTCCTGTGATTTCTTCAATCTATTTGGAGCTTTGGCATGCTTGTGCTGGTCCACTCATTTCACTACCCAAGAAAGGAAATGTGGTTGTCTACTTCCCACAAGGTCACTTGGAACAAGTTGCCTCATCATCCCCTCCTTTCTCATCCATGGAGAAGCCTCACTTTGATCTCCAGCCACAGATCTTCTGCAAGGTTGTCAATGTCCAGCTGCTTGCTAACAAGGAGAATGATGAGGTCTACACACATGTTACTTTACTTCCTCAGGCAGAGTCGGCAGGAATGAATTTGGAAGGCAAAGAGCTTGAAGAGTTGGGGGTGGATGAGGGGGATGGGGGATCACCTACAAAATCAACCCCTCACATGTTTTGCAAAACACTTACAGCTTCTGATACCAGTACCCATGGAGGGTTCTCTGTTCCTCGCAGAGCTGCAGAAGACTGTCAGCCACGGCGGCATCTGCTCACCACAGGGTGGAGTATTTTTATAAGCCAAAAGAATCTTGTCTCAGGGGATGCTGTGCTCTTTCTGAGGGGTGAAAATGGAGAGCTTAGGTTGGGCATTAGAAGAGCTGTTCGGCCTAGAAATGGCCTTCCTGATTCAGTTATCGGCAACCAGAATTCTTATTCTAGTGTTCTTTCCCCAGTCGCTAATGCTGTATCCACCAAGAGCATGTTCCATGTATTCTACAGTCCAAGGGCAAGCCATGCGGAGTTTGTTATTCCCTACCAAAAATATGTTAGAAGCATTGCTAATCCAGTGACCATGGGGACAAGATTCAAAATGAGATTTGATAGGGATGATTCACCAGAAAGAAGGTGCAGTGGTGTAGTGACCGGCATCAGTGACTTGGATCCCTATCGATGGCCAAAATCAAAATGGAGATGCTTAATGGTGAGATGGGATGACGATATAGGAAATGATCATCAAGAACGAGTCTCTTTGTGGGAGATTGATCCTTCTGTTTCTCTCCCACCTTTGAGCATTCAGTCTTCTCCAAGATTGAAGAAACTGCGGACAAGTCTGCAGGCATTCCCACCTAACCACTCCATTCCTGGTAGAATACTTCTCACTGGAAGTTGTGGGCTTATGGACTTTGAGGAGACAGTTAAATCCTCTAAGGTCTTGCAAGGTCAAGAAAATATGGGTTTCATATCACCCCACTATGGATGTGATACATTAAAGAGCCCTGTGGATTTTGAGATGCAGCCTTCGGCACATCAAAATCTTGCATCACATGTAACCCAGAAGGCTACTATTGGCGAGTTCATGAGAGCTCACCACACCAGTTACACAGGATTTGCGGAATCTGACAGATTTCCGAAAGTCTTGCAAGGTCAAGAAATATGCCCGTTGAGATCTTTGACAGGAAAAGCAAATTTCAATCTGGGCGATTGGGAGTCCAATCTTGGTAGCACATCTTTCAACAATTATCAGGCACCCAAACCGAATATGTTCACTCTGGGTTCTGAATCACTTCTAAACATGTATTTTCCCTATGGTGACATTCACAAGGTTGGCCAAGATCCCATGATATGCTCTAATACTACCAACTTACCCAGAGAGAGAATGAAAGCGAACCCATATTCTATTCAGATGGGAGTTACAAGAAATGAAGTTGGAAGGCCAAAAAAACCTAGTGAGCATCAGCCACAGGAAAGTACCTCTGCTCTTCCTACTTTAGTGACAAATATAAAAAGTCCAAAAGAGGTCAGCGCTGATGGAACTGCTAATGGATGTAAACTTTTCGGTTTTTCCTTATCGGGGGAAACTCCCACACTAAGTCAGAGTTCTAGTAAGAGGAGTTGTACAAAGGTTCACAAGCAAGGAAGCTTAGTGGGAAGAGCCATTGATCTCGCAAAACTGAATGGCTATGGTGACCTGCTGAGCGAACTAGAGCGGCTATTTAGCATGGAAGGCCTTCTACGAGATCCTAATAAAGGATGGCGGATCTTTGAGTTCTGCAACGTGGTTTCCAAAATTCACATATACACCCAGGAAGAAGTGGAGAAGATGACAATAGGAATGATCAGTGATGATACCCAAAGTTGTTTGGAACAAGCTCCACCTATGCTGGAAGTGTCAAAGTCCTCATCAGTTGGGCAGCCGGATTCTTCTCCAACAGCAATTAGGGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001708 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009791 GO:0009889 GO:0009987 GO:0010050 GO:0010158 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045165 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AUX_IAA Auxin_resp B3

Protein Analysis

815

Amino Acids

89.3

Weight (kDa)

7.76

Isoelectric Point (pI)

49.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	252 - 294	1e-05	B3 DNA binding domain
ARF_AD	PF06507	342 - 424	3.5e-33	Auxin response factor ancillary domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006152)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60450 AT5G60450
fragaria_vesca	FvH4_3g32860 FvH4_3g32860 FvH4_3g32860 FvH4_3g32860 FvH4_3g32860
malus_domestica	MD03G1116000.v1.1 MD11G1132400.v1.1
prunus_persica	Prupe.6G097700_v2.0.a1 Prupe.6G097700_v2.0.a1 Prupe.6G097700_v2.0.a1 Prupe.6G097700_v2.0.a1 Prupe.6G097700_v2.0.a1
pyrus_communis	pycom11g10920
rosa_chinensis	RchiOBHm_Chr5g0060011
rosa_laevigata	RLG00000035338
rosa_multiflora	Rmu_sc0000493.1_g000006
rosa_roxburghii	Rroxscaffold_1G00020650
rosa_rugosa	Rorug05G0327400 Rorug05G0327500 Rorug05G0327600
rosa_samantha	Rh5AG391400 Rh5BG404000 Rh5CG427800 Rh5DG419600
rosa_wichuraiana	Rw5G036880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	797
AarI	CACCTGC	1 cut(s)	130
Acc36I	ACCTGC	2 cut(s)	130, 2199
AccB1I	GGYRCC	2 cut(s)	118, 1747
AccB7I	CCANNNNNTGG	1 cut(s)	783
AccBSI	CCGCTC	1 cut(s)	2209
AccI	GTMKAC	2 cut(s)	402, 549
AccII	CGCG	1 cut(s)	150
AciI	CCGC	6 cut(s)	763, 1019, 1324, 1613, 2209, 2257
AclWI	GGATC	7 cut(s)	655, 1157, 1170, 1259, 1829, 2234, 2267
AcoI	YGGCCR	2 cut(s)	1175, 1828
AcsI	RAATTY	5 cut(s)	301, 595, 928, 1687, 2289
AdeI	CACNNNGTG	1 cut(s)	783
AfaI	GTAC	4 cut(s)	131, 709, 1972, 2119
AfeI	AGCGCT	1 cut(s)	2026
AfiI	CCNNNNNNNGG	8 cut(s)	386, 717, 783, 896, 1173, 1475, 2073, 2249
AflIII	ACRYGT	4 cut(s)	556, 672, 1546, 1794
AgsI	TTSAA	8 cut(s)	282, 300, 330, 617, 1090, 1315, 1693, 1735
AjnI	CCWGG	2 cut(s)	1363, 2304
AjuI	GAANNNNNNNTTGG	2 cut(s)	968, 1000
Alw21I	GWGCWC	3 cut(s)	265, 834, 1588
Alw26I	GTCTC	3 cut(s)	820, 1252, 1406
AlwI	GGATC	7 cut(s)	655, 1157, 1170, 1259, 1829, 2234, 2267
AlwNI	CAGNNNCTG	2 cut(s)	317, 698
Aor51HI	AGCGCT	1 cut(s)	2026
AoxI	GGCC	7 cut(s)	36, 887, 898, 1175, 1828, 1934, 2227
ApeKI	GCWGC	5 cut(s)	20, 520, 740, 1516, 2413
ApoI	RAATTY	5 cut(s)	301, 595, 928, 1687, 2289
Asp700I	GAANNNNTTC	3 cut(s)	1763, 1785, 2229
AspLEI	GCGC	4 cut(s)	25, 34, 152, 2027
AspS9I	GGNCC	1 cut(s)	362
AvaII	GGWCC	1 cut(s)	362
AxyI	CCTNAGG	1 cut(s)	573
BalI	TGGCCA	2 cut(s)	1177, 1830
BamHI	GGATCC	1 cut(s)	1162
BanI	GGYRCC	2 cut(s)	118, 1747
BanII	GRGCYC	2 cut(s)	1499, 1588
BarI	GAAGNNNNNNTAC	2 cut(s)	2217, 2249
BbsI	GAAGAC	2 cut(s)	753, 1293
Bbv12I	GWGCWC	3 cut(s)	265, 834, 1588
BbvI	GCAGC	5 cut(s)	32, 507, 727, 1528, 2425
BccI	CCATC	6 cut(s)	635, 1167, 1203, 1900, 2024, 2247
BceAI	ACGGC	1 cut(s)	776
BcgI	CGANNNNNNTGC	2 cut(s)	1621, 1655
BciT130I	CCWGG	2 cut(s)	1365, 2306
BciVI	GTATCC	1 cut(s)	979
BclI	TGATCA	2 cut(s)	1231, 2337
BcoDI	GTCTC	3 cut(s)	820, 1252, 1406
BfaI	CTAG	6 cut(s)	12, 891, 939, 1947, 2103, 2204
BfmI	CTRYAG	3 cut(s)	741, 997, 1334
BfoI	RGCGCY	2 cut(s)	26, 2028
BfuAI	ACCTGC	2 cut(s)	130, 2199
BfuI	GTATCC	1 cut(s)	979
BglI	GCCNNNNNGGC	1 cut(s)	763
BglII	AGATCT	2 cut(s)	492, 1667
BisI	GCNGC	7 cut(s)	21, 521, 741, 764, 1517, 2210, 2414
BlpI	GCTNAGC	1 cut(s)	2195
BlsI	GCNGC	7 cut(s)	22, 522, 742, 765, 1518, 2211, 2415
Bme1390I	CCNGG	2 cut(s)	1365, 2306
Bme18I	GGWCC	1 cut(s)	362
BmgT120I	GGNCC	1 cut(s)	362
BmiI	GGNNCC	3 cut(s)	120, 1164, 1749
BmrFI	CCNGG	2 cut(s)	1365, 2306
BmrI	ACTGGG	1 cut(s)	947
BmsI	GCATC	8 cut(s)	54, 775, 814, 1158, 1184, 1503, 1550, 1963
BmuI	ACTGGG	1 cut(s)	947
BpiI	GAAGAC	2 cut(s)	753, 1293
BpmI	CTGGAG	1 cut(s)	467
Bpu10I	CCTNAGC	1 cut(s)	860
Bpu1102I	GCTNAGC	1 cut(s)	2195
Bsa29I	ATCGAT	1 cut(s)	1171
BsaBI	GATNNNNATC	1 cut(s)	1167
BsaJI	CCNNGG	6 cut(s)	459, 712, 758, 1004, 1074, 2304
Bsc4I	CCNNNNNNNGG	8 cut(s)	386, 717, 783, 896, 1173, 1475, 2073, 2249
Bse118I	RCCGGY	1 cut(s)	1145
Bse1I	ACTGG	5 cut(s)	705, 953, 1067, 1387, 1596
Bse21I	CCTNAGG	1 cut(s)	573
Bse3DI	GCAATG	2 cut(s)	132, 1056
Bse8I	GATNNNNATC	1 cut(s)	1167
BseBI	CCWGG	2 cut(s)	1365, 2306
BseCI	ATCGAT	1 cut(s)	1171
BseDI	CCNNGG	6 cut(s)	459, 712, 758, 1004, 1074, 2304
BseJI	GATNNNNATC	1 cut(s)	1167
BseLI	CCNNNNNNNGG	8 cut(s)	386, 717, 783, 896, 1173, 1475, 2073, 2249
BseMI	GCAATG	2 cut(s)	132, 1056
BseMII	CTCAG	4 cut(s)	587, 830, 831, 2186
BseNI	ACTGG	5 cut(s)	705, 953, 1067, 1387, 1596
BseRI	GAGGAG	2 cut(s)	1424, 2125
BseXI	GCAGC	5 cut(s)	32, 507, 727, 1528, 2425
BsgI	GTGCAG	1 cut(s)	1150
Bsh1236I	CGCG	1 cut(s)	150
BshFI	GGCC	7 cut(s)	38, 889, 900, 1177, 1830, 1936, 2229
BshNI	GGYRCC	2 cut(s)	118, 1747
BshVI	ATCGAT	1 cut(s)	1171
BsiHKAI	GWGCWC	3 cut(s)	265, 834, 1588
BsiSI	CCGG	2 cut(s)	1146, 2417
BslFI	GGGAC	1 cut(s)	1093
BslI	CCNNNNNNNGG	8 cut(s)	386, 717, 783, 896, 1173, 1475, 2073, 2249
BsmAI	GTCTC	3 cut(s)	820, 1252, 1406
BsmFI	GGGAC	1 cut(s)	1093
BsmI	GAATGC	3 cut(s)	229, 1293, 1340
BsnI	GGCC	7 cut(s)	38, 889, 900, 1177, 1830, 1936, 2229
Bsp1286I	GDGCHC	4 cut(s)	265, 834, 1499, 1588
Bsp1407I	TGTACA	2 cut(s)	129, 2117
Bsp1720I	GCTNAGC	1 cut(s)	2195
Bsp19I	CCATGG	3 cut(s)	459, 712, 1074
BspACI	CCGC	6 cut(s)	763, 1019, 1324, 1613, 2209, 2257
BspANI	GGCC	7 cut(s)	38, 889, 900, 1177, 1830, 1936, 2229
BspCNI	CTCAG	4 cut(s)	586, 830, 831, 2187
BspDI	ATCGAT	1 cut(s)	1171
BspFNI	CGCG	1 cut(s)	150
BspHI	TCATGA	1 cut(s)	1578
BspLI	GGNNCC	3 cut(s)	120, 1164, 1749
BspMAI	CTGCAG	2 cut(s)	745, 1338
BspMI	ACCTGC	2 cut(s)	130, 2199
BspPI	GGATC	7 cut(s)	655, 1157, 1170, 1259, 1829, 2234, 2267
BspQI	GCTCTTC	3 cut(s)	871, 1986, 2146
BspT107I	GGYRCC	2 cut(s)	118, 1747
BsrBI	CCGCTC	1 cut(s)	2209
BsrDI	GCAATG	2 cut(s)	132, 1056
BsrFI	RCCGGY	1 cut(s)	1145
BsrGI	TGTACA	2 cut(s)	129, 2117
BsrI	ACTGG	5 cut(s)	705, 953, 1067, 1387, 1596
BssAI	RCCGGY	1 cut(s)	1145
BssECI	CCNNGG	6 cut(s)	459, 712, 758, 1004, 1074, 2304
BssT1I	CCWWGG	4 cut(s)	459, 712, 1004, 1074
Bst2UI	CCWGG	2 cut(s)	1365, 2306
Bst4CI	ACNGT	3 cut(s)	752, 1001, 1417
Bst6I	CTCTTC	5 cut(s)	283, 612, 871, 1986, 2146
BstAPI	GCANNNNNTGC	1 cut(s)	1016
BstAUI	TGTACA	2 cut(s)	129, 2117
BstC8I	GCNNGC	6 cut(s)	36, 139, 351, 525, 1012, 1338
BstDEI	CTNAG	8 cut(s)	573, 817, 839, 860, 1428, 2090, 2143, 2195
BstDSI	CCRYGG	4 cut(s)	459, 712, 758, 1074
BstEII	GGTNACC	1 cut(s)	2186
BstENI	CCTNNNNNAGG	1 cut(s)	2247
BstFNI	CGCG	1 cut(s)	150
BstH2I	RGCGCY	2 cut(s)	26, 2028
BstHHI	GCGC	4 cut(s)	25, 34, 152, 2027
BstMAI	GTCTC	3 cut(s)	820, 1252, 1406
BstMWI	GCNNNNNNNGC	9 cut(s)	17, 29, 31, 147, 584, 763, 769, 1016, 2226
BstNI	CCWGG	2 cut(s)	1365, 2306
BstNSI	RCATGY	7 cut(s)	141, 353, 560, 676, 985, 1550, 1798
BstPI	GGTNACC	1 cut(s)	2186
BstSCI	CCNGG	2 cut(s)	1363, 2304
BstSFI	CTRYAG	3 cut(s)	741, 997, 1334
BstUI	CGCG	1 cut(s)	150
BstV1I	GCAGC	5 cut(s)	32, 507, 727, 1528, 2425
BstV2I	GAAGAC	2 cut(s)	753, 1293
BstX2I	RGATCY	6 cut(s)	492, 1162, 1667, 1834, 2239, 2259
BstYI	RGATCY	6 cut(s)	492, 1162, 1667, 1834, 2239, 2259
Bsu15I	ATCGAT	1 cut(s)	1171
Bsu36I	CCTNAGG	1 cut(s)	573
BsuI	GTATCC	1 cut(s)	979
BsuRI	GGCC	7 cut(s)	38, 889, 900, 1177, 1830, 1936, 2229
BsuTUI	ATCGAT	1 cut(s)	1171
BtgI	CCRYGG	4 cut(s)	459, 712, 758, 1074
BtsI	GCAGTG	1 cut(s)	1138
BtsIMutI	CAGTG	5 cut(s)	1074, 1138, 1159, 1380, 2347
BveI	ACCTGC	2 cut(s)	130, 2199
Cac8I	GCNNGC	6 cut(s)	36, 139, 351, 525, 1012, 1338
CaiI	CAGNNNCTG	2 cut(s)	317, 698
CciI	TCATGA	1 cut(s)	1578
CfoI	GCGC	4 cut(s)	25, 34, 152, 2027
Cfr10I	RCCGGY	1 cut(s)	1145
Cfr13I	GGNCC	1 cut(s)	362
ClaI	ATCGAT	1 cut(s)	1171
Csp6I	GTAC	4 cut(s)	130, 708, 1971, 2118
CviQI	GTAC	4 cut(s)	130, 708, 1971, 2118
DdeI	CTNAG	8 cut(s)	573, 817, 839, 860, 1428, 2090, 2143, 2195
DraIII	CACNNNGTG	1 cut(s)	783
EaeI	YGGCCR	2 cut(s)	1175, 1828
Eam1104I	CTCTTC	5 cut(s)	283, 612, 871, 1986, 2146
EarI	CTCTTC	5 cut(s)	283, 612, 871, 1986, 2146
EciI	GGCGGA	1 cut(s)	2272
Ecl136II	GAGCTC	1 cut(s)	1586
Eco130I	CCWWGG	4 cut(s)	459, 712, 1004, 1074
Eco147I	AGGCCT	2 cut(s)	38, 2229
Eco24I	GRGCYC	2 cut(s)	1499, 1588
Eco47I	GGWCC	1 cut(s)	362
Eco47III	AGCGCT	1 cut(s)	2026
Eco53kI	GAGCTC	1 cut(s)	1586
Eco81I	CCTNAGG	1 cut(s)	573
Eco91I	GGTNACC	1 cut(s)	2186
EcoICRI	GAGCTC	1 cut(s)	1586
EcoNI	CCTNNNNNAGG	1 cut(s)	2247
EcoO65I	GGTNACC	1 cut(s)	2186
EcoRI	GAATTC	1 cut(s)	928
EcoRII	CCWGG	2 cut(s)	1363, 2304
EcoT14I	CCWWGG	4 cut(s)	459, 712, 1004, 1074
EcoT22I	ATGCAT	1 cut(s)	229
EcoT38I	GRGCYC	2 cut(s)	1499, 1588
ErhI	CCWWGG	4 cut(s)	459, 712, 1004, 1074
FalI	AAGNNNNNCTT	2 cut(s)	458, 490
FaqI	GGGAC	1 cut(s)	1093
FbaI	TGATCA	2 cut(s)	1231, 2337
FblI	GTMKAC	2 cut(s)	402, 549
Fnu4HI	GCNGC	7 cut(s)	21, 521, 741, 764, 1517, 2210, 2414
FriOI	GRGCYC	2 cut(s)	1499, 1588
Fsp4HI	GCNGC	7 cut(s)	21, 521, 741, 764, 1517, 2210, 2414
FspBI	CTAG	6 cut(s)	12, 891, 939, 1947, 2103, 2204
GlaI	GCGC	4 cut(s)	24, 33, 151, 2026
GluI	GCNGC	7 cut(s)	21, 521, 741, 764, 1517, 2210, 2414
GsuI	CTGGAG	1 cut(s)	467
HaeII	RGCGCY	2 cut(s)	26, 2028
HaeIII	GGCC	7 cut(s)	38, 889, 900, 1177, 1830, 1936, 2229
HapII	CCGG	2 cut(s)	1146, 2417
HhaI	GCGC	4 cut(s)	25, 34, 152, 2027
Hin6I	GCGC	4 cut(s)	23, 32, 150, 2025
HinP1I	GCGC	4 cut(s)	23, 32, 150, 2025
HindIII	AAGCTT	1 cut(s)	2140
HpaII	CCGG	2 cut(s)	1146, 2417
Hpy166II	GTNNAC	6 cut(s)	365, 403, 550, 1767, 2051, 2128
Hpy188III	TCNNGA	5 cut(s)	905, 1238, 1445, 1579, 1649
Hpy8I	GTNNAC	6 cut(s)	365, 403, 550, 1767, 2051, 2128
HpyAV	CCTTC	9 cut(s)	596, 911, 1119, 1278, 1530, 1552, 1926, 2219, 2240
HpyCH4III	ACNGT	3 cut(s)	752, 1001, 1417
HpyCH4IV	ACGT	1 cut(s)	2277
HpyF10VI	GCNNNNNNNGC	9 cut(s)	17, 29, 31, 147, 584, 763, 769, 1016, 2226
HpyF3I	CTNAG	8 cut(s)	573, 817, 839, 860, 1428, 2090, 2143, 2195
HpySE526I	ACGT	1 cut(s)	2277
HspAI	GCGC	4 cut(s)	23, 32, 150, 2025
Ksp22I	TGATCA	2 cut(s)	1231, 2337
LguI	GCTCTTC	3 cut(s)	871, 1986, 2146
LmnI	GCTCC	2 cut(s)	340, 2377
Lsp1109I	GCAGC	5 cut(s)	32, 507, 727, 1528, 2425
LweI	GCATC	8 cut(s)	54, 775, 814, 1158, 1184, 1503, 1550, 1963
MaeI	CTAG	6 cut(s)	12, 891, 939, 1947, 2103, 2204
MaeII	ACGT	1 cut(s)	2277
MbiI	CCGCTC	1 cut(s)	2209
MflI	RGATCY	6 cut(s)	492, 1162, 1667, 1834, 2239, 2259
MhlI	GDGCHC	4 cut(s)	265, 834, 1499, 1588
MlsI	TGGCCA	2 cut(s)	1177, 1830
MluCI	AATT	7 cut(s)	301, 595, 928, 1687, 1738, 2289, 2436
MluNI	TGGCCA	2 cut(s)	1177, 1830
MlyI	GAGTC	4 cut(s)	107, 590, 1254, 1718
MmeI	TCCRAC	1 cut(s)	1909
Mox20I	TGGCCA	2 cut(s)	1177, 1830
Mph1103I	ATGCAT	1 cut(s)	229
MroXI	GAANNNNTTC	3 cut(s)	1763, 1785, 2229
MscI	TGGCCA	2 cut(s)	1177, 1830
MseI	TTAA	4 cut(s)	186, 1199, 1419, 1490
MslI	CAYNNNNRTG	1 cut(s)	354
Msp20I	TGGCCA	2 cut(s)	1177, 1830
MspA1I	CMGCKG	1 cut(s)	520
MspI	CCGG	2 cut(s)	1146, 2417
MspR9I	CCNGG	2 cut(s)	1365, 2306
Mva1269I	GAATGC	3 cut(s)	229, 1293, 1340
MvaI	CCWGG	2 cut(s)	1365, 2306
MvnI	CGCG	1 cut(s)	150
MwoI	GCNNNNNNNGC	9 cut(s)	17, 29, 31, 147, 584, 763, 769, 1016, 2226
NcoI	CCATGG	3 cut(s)	459, 712, 1074
NlaIV	GGNNCC	3 cut(s)	120, 1164, 1749
NmeAIII	GCCGAG	1 cut(s)	95
NmuCI	GTSAC	9 cut(s)	105, 245, 416, 1069, 1141, 1154, 1811, 1993, 2186
NsiI	ATGCAT	1 cut(s)	229
NspI	RCATGY	7 cut(s)	141, 353, 560, 676, 985, 1550, 1798
PaeI	GCATGC	2 cut(s)	141, 353
PagI	TCATGA	1 cut(s)	1578
PaqCI	CACCTGC	1 cut(s)	130
PceI	AGGCCT	2 cut(s)	38, 2229
PciI	ACATGT	4 cut(s)	556, 672, 1546, 1794
PciSI	GCTCTTC	3 cut(s)	871, 1986, 2146
PctI	GAATGC	3 cut(s)	229, 1293, 1340
PdmI	GAANNNNTTC	3 cut(s)	1763, 1785, 2229
PfeI	GAWTC	9 cut(s)	69, 170, 808, 908, 1086, 1112, 1616, 1781, 2420
PflMI	CCANNNNNTGG	1 cut(s)	783
PkrI	GCNGC	7 cut(s)	22, 522, 742, 765, 1518, 2211, 2415
PleI	GAGTC	4 cut(s)	107, 589, 1253, 1717
PpsI	GAGTC	4 cut(s)	107, 589, 1253, 1717
PscI	ACATGT	4 cut(s)	556, 672, 1546, 1794
PsiI	TTATAA	1 cut(s)	797
Psp124BI	GAGCTC	1 cut(s)	1588
Psp6I	CCWGG	2 cut(s)	1363, 2304
PspEI	GGTNACC	1 cut(s)	2186
PspGI	CCWGG	2 cut(s)	1363, 2304
PspN4I	GGNNCC	3 cut(s)	120, 1164, 1749
PspPI	GGNCC	1 cut(s)	362
PstI	CTGCAG	2 cut(s)	745, 1338
PstNI	CAGNNNCTG	2 cut(s)	317, 698
PsuI	RGATCY	6 cut(s)	492, 1162, 1667, 1834, 2239, 2259
PvuII	CAGCTG	1 cut(s)	520
RsaI	GTAC	4 cut(s)	131, 709, 1972, 2119
RsaNI	GTAC	4 cut(s)	130, 708, 1971, 2118
RseI	CAYNNNNRTG	1 cut(s)	354
SacI	GAGCTC	1 cut(s)	1588
SapI	GCTCTTC	3 cut(s)	871, 1986, 2146
SaqAI	TTAA	4 cut(s)	186, 1199, 1419, 1490
SatI	GCNGC	7 cut(s)	21, 521, 741, 764, 1517, 2210, 2414
Sau96I	GGNCC	1 cut(s)	362
SchI	GAGTC	4 cut(s)	107, 590, 1254, 1718
ScrFI	CCNGG	2 cut(s)	1365, 2306
SduI	GDGCHC	4 cut(s)	265, 834, 1499, 1588
SfaNI	GCATC	8 cut(s)	54, 775, 814, 1158, 1184, 1503, 1550, 1963
SfcI	CTRYAG	3 cut(s)	741, 997, 1334
SinI	GGWCC	1 cut(s)	362
SmiMI	CAYNNNNRTG	1 cut(s)	354
SphI	GCATGC	2 cut(s)	141, 353
Sse9I	AATT	7 cut(s)	301, 595, 928, 1687, 1738, 2289, 2436
SseBI	AGGCCT	2 cut(s)	38, 2229
SsiI	CCGC	6 cut(s)	763, 1019, 1324, 1613, 2209, 2257
SspMI	CTAG	6 cut(s)	12, 891, 939, 1947, 2103, 2204
SstI	GAGCTC	1 cut(s)	1588
StuI	AGGCCT	2 cut(s)	38, 2229
StyD4I	CCNGG	2 cut(s)	1363, 2304
StyI	CCWWGG	4 cut(s)	459, 712, 1004, 1074
TaaI	ACNGT	3 cut(s)	752, 1001, 1417
TaiI	ACGT	1 cut(s)	2280
TaqI	TCGA	2 cut(s)	67, 1171
TasI	AATT	7 cut(s)	301, 595, 928, 1687, 1738, 2289, 2436
TatI	WGTACW	2 cut(s)	129, 2117
TauI	GCSGC	2 cut(s)	766, 2212
TfiI	GAWTC	9 cut(s)	69, 170, 808, 908, 1086, 1112, 1616, 1781, 2420
Tru1I	TTAA	4 cut(s)	186, 1199, 1419, 1490
Tru9I	TTAA	4 cut(s)	186, 1199, 1419, 1490
TscAI	CASTG	5 cut(s)	1074, 1138, 1159, 1387, 2347
TseFI	GTSAC	9 cut(s)	105, 245, 416, 1069, 1141, 1154, 1811, 1993, 2186
TseI	GCWGC	5 cut(s)	20, 520, 740, 1516, 2413
Tsp45I	GTSAC	9 cut(s)	105, 245, 416, 1069, 1141, 1154, 1811, 1993, 2186
TspDTI	ATGAA	6 cut(s)	294, 608, 1450, 1567, 1895, 1938
TspGWI	ACGGA	1 cut(s)	93
TspRI	CASTG	5 cut(s)	1074, 1138, 1159, 1387, 2347
Van91I	CCANNNNNTGG	1 cut(s)	783
VpaK11BI	GGWCC	1 cut(s)	362
XagI	CCTNNNNNAGG	1 cut(s)	2247
XapI	RAATTY	5 cut(s)	301, 595, 928, 1687, 2289
XceI	RCATGY	7 cut(s)	141, 353, 560, 676, 985, 1550, 1798
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1185, 1361
XmiI	GTMKAC	2 cut(s)	402, 549
XmnI	GAANNNNTTC	3 cut(s)	1763, 1785, 2229
XspI	CTAG	6 cut(s)	12, 891, 939, 1947, 2103, 2204
Zsp2I	ATGCAT	1 cut(s)	229

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.