Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0006152

Physical Location & Seq

Genomic Coordinates Reverse (-)

39389623 .. 39390514

Gene Structure 892 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0327500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGGACTCGAAAGAGAGTGAAAACATAGCAGTTACTGATGCAAAGGCCGCGGCCAAAGGTAAGGCTGCAGAAGGTGCTCCTACTGCTGTCGTCGCAATGAAAACGAAAACACAGACTAGAAGAGGATCCAAGAAAGGACTAGCAATCGTAGACTTGGTCCTCAGGCTTGGTGCCAGTTCGGCTGCTGTTGCTGCTGCTTACAGTCCATTAAGCGCTGAGCAGATTCTTCCCTTCTTCACACAGTTCCTCCAGTTCCATGCTGAATACAATGATCTCCCGACTTTCACGTTTTTTGTCGTTGCAAATGCGATTGCTGTTGGATATATTGGCCTCTCCATGCCCTTCTCTATTGTATGCATCATTCGACCACGTGCAATAGGGCCGAGGCTTCTACTAGTAATCTGTGACACGGTGATGATTGCTCTAGTGGTAGCTGCTGCCGGAGCTTCTTCTGCAATAATGTACTTGGCTCATAACGGAAATTTGGACTCGAACTGGCTTGCTATTTGTATGCAATATACTAACTTTTGCCAGGGACTTAGTGGGGCTGTTGTGGCTTCATTTGTCGCTGCGGTCTTTTTCATGTTGCTGGTTGTGAATTCTACTTTTGCTCTTAAGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001708 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009791 GO:0009889 GO:0009987 GO:0010050 GO:0010158 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045165 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AUX_IAA Auxin_resp B3

Protein Analysis

207

Amino Acids

21.83

Weight (kDa)

9.12

Isoelectric Point (pI)

27.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CASP_dom	PF04535	45 - 193	2.4e-40	Casparian strip membrane protein domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006152)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60450 AT5G60450
fragaria_vesca	FvH4_3g32860 FvH4_3g32860 FvH4_3g32860 FvH4_3g32860 FvH4_3g32860
malus_domestica	MD03G1116000.v1.1 MD11G1132400.v1.1
prunus_persica	Prupe.6G097700_v2.0.a1 Prupe.6G097700_v2.0.a1 Prupe.6G097700_v2.0.a1 Prupe.6G097700_v2.0.a1 Prupe.6G097700_v2.0.a1
pyrus_communis	pycom11g10920
rosa_chinensis	RchiOBHm_Chr5g0060011
rosa_laevigata	RLG00000035338
rosa_multiflora	Rmu_sc0000493.1_g000006
rosa_roxburghii	Rroxscaffold_1G00020650
rosa_rugosa	Rorug05G0327400 Rorug05G0327500 Rorug05G0327600
rosa_samantha	Rh5AG391400 Rh5BG404000 Rh5CG427800 Rh5DG419600
rosa_wichuraiana	Rw5G036880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	170
AccI	GTMKAC	1 cut(s)	150
AccII	CGCG	1 cut(s)	50
AciI	CCGC	3 cut(s)	48, 50, 572
AclWI	GGATC	2 cut(s)	120, 133
AcoI	YGGCCR	1 cut(s)	51
AcsI	RAATTY	2 cut(s)	481, 598
AcvI	CACGTG	1 cut(s)	371
AfaI	GTAC	1 cut(s)	464
AfeI	AGCGCT	1 cut(s)	214
AflII	CTTAAG	1 cut(s)	614
AhlI	ACTAGT	1 cut(s)	394
AjnI	CCWGG	1 cut(s)	531
AluBI	AGCT	2 cut(s)	434, 446
AluI	AGCT	2 cut(s)	434, 446
Alw21I	GWGCWC	1 cut(s)	79
AlwI	GGATC	2 cut(s)	120, 133
AlwNI	CAGNNNCTG	1 cut(s)	35
Aor51HI	AGCGCT	1 cut(s)	214
AoxI	GGCC	4 cut(s)	45, 51, 328, 380
ApeKI	GCWGC	7 cut(s)	65, 182, 191, 194, 434, 437, 569
ApoI	RAATTY	2 cut(s)	481, 598
AspLEI	GCGC	1 cut(s)	215
AspS9I	GGNCC	2 cut(s)	157, 380
AsuHPI	GGTGA	1 cut(s)	424
AvaII	GGWCC	1 cut(s)	157
AxyI	CCTNAGG	1 cut(s)	161
BamHI	GGATCC	1 cut(s)	125
BanI	GGYRCC	1 cut(s)	170
BbrPI	CACGTG	1 cut(s)	371
Bbv12I	GWGCWC	1 cut(s)	79
BbvI	GCAGC	7 cut(s)	52, 169, 178, 181, 421, 424, 556
BciT130I	CCWGG	1 cut(s)	533
BcuI	ACTAGT	1 cut(s)	394
BfaI	CTAG	4 cut(s)	117, 140, 395, 425
BfmI	CTRYAG	1 cut(s)	66
BfoI	RGCGCY	1 cut(s)	216
BfrI	CTTAAG	1 cut(s)	614
BglI	GCCNNNNNGGC	1 cut(s)	179
BisI	GCNGC	9 cut(s)	48, 51, 66, 183, 192, 195, 435, 438, 570
BlpI	GCTNAGC	1 cut(s)	216
BlsI	GCNGC	9 cut(s)	49, 52, 67, 184, 193, 196, 436, 439, 571
Bme1390I	CCNGG	1 cut(s)	533
Bme18I	GGWCC	1 cut(s)	157
BmgT120I	GGNCC	2 cut(s)	157, 380
BmiI	GGNNCC	2 cut(s)	127, 172
BmrFI	CCNGG	1 cut(s)	533
BmsI	GCATC	2 cut(s)	28, 366
BpmI	CTGGAG	1 cut(s)	233
Bpu1102I	GCTNAGC	1 cut(s)	216
BsaAI	YACGTR	1 cut(s)	371
BsaJI	CCNNGG	3 cut(s)	48, 383, 532
BsaXI	ACNNNNNCTCC	2 cut(s)	231, 261
Bse1I	ACTGG	3 cut(s)	174, 250, 500
Bse21I	CCTNAGG	1 cut(s)	161
Bse3DI	GCAATG	1 cut(s)	102
BseBI	CCWGG	1 cut(s)	533
BseDI	CCNNGG	3 cut(s)	48, 383, 532
BseMI	GCAATG	1 cut(s)	102
BseMII	CTCAG	2 cut(s)	175, 207
BseNI	ACTGG	3 cut(s)	174, 250, 500
BseXI	GCAGC	7 cut(s)	52, 169, 178, 181, 421, 424, 556
Bsh1236I	CGCG	1 cut(s)	50
BshFI	GGCC	4 cut(s)	47, 53, 330, 382
BshNI	GGYRCC	1 cut(s)	170
BsiHKAI	GWGCWC	1 cut(s)	79
BsiSI	CCGG	1 cut(s)	441
BslFI	GGGAC	1 cut(s)	549
BsmFI	GGGAC	1 cut(s)	549
BsnI	GGCC	4 cut(s)	47, 53, 330, 382
Bsp1286I	GDGCHC	1 cut(s)	79
Bsp143I	GATC	2 cut(s)	125, 271
Bsp1720I	GCTNAGC	1 cut(s)	216
BspACI	CCGC	3 cut(s)	48, 50, 572
BspANI	GGCC	4 cut(s)	47, 53, 330, 382
BspCNI	CTCAG	2 cut(s)	174, 208
BspFNI	CGCG	1 cut(s)	50
BspLI	GGNNCC	2 cut(s)	127, 172
BspMAI	CTGCAG	1 cut(s)	70
BspPI	GGATC	2 cut(s)	120, 133
BspT107I	GGYRCC	1 cut(s)	170
BspTI	CTTAAG	1 cut(s)	614
BsrDI	GCAATG	1 cut(s)	102
BsrI	ACTGG	3 cut(s)	174, 250, 500
BssECI	CCNNGG	3 cut(s)	48, 383, 532
BssMI	GATC	2 cut(s)	125, 271
Bst2UI	CCWGG	1 cut(s)	533
Bst4CI	ACNGT	3 cut(s)	203, 243, 412
Bst6I	CTCTTC	1 cut(s)	115
BstAFI	CTTAAG	1 cut(s)	614
BstAPI	GCANNNNNTGC	1 cut(s)	74
BstBAI	YACGTR	1 cut(s)	371
BstC8I	GCNNGC	1 cut(s)	501
BstDEI	CTNAG	3 cut(s)	161, 216, 539
BstDSI	CCRYGG	1 cut(s)	48
BstFNI	CGCG	1 cut(s)	50
BstH2I	RGCGCY	1 cut(s)	216
BstHHI	GCGC	1 cut(s)	215
BstKTI	GATC	2 cut(s)	128, 274
BstMBI	GATC	2 cut(s)	125, 271
BstNI	CCWGG	1 cut(s)	533
BstSCI	CCNGG	1 cut(s)	531
BstSFI	CTRYAG	1 cut(s)	66
BstUI	CGCG	1 cut(s)	50
BstV1I	GCAGC	7 cut(s)	52, 169, 178, 181, 421, 424, 556
BstX2I	RGATCY	1 cut(s)	125
BstYI	RGATCY	1 cut(s)	125
Bsu36I	CCTNAGG	1 cut(s)	161
BsuRI	GGCC	4 cut(s)	47, 53, 330, 382
BtgI	CCRYGG	1 cut(s)	48
Cac8I	GCNNGC	1 cut(s)	501
CaiI	CAGNNNCTG	1 cut(s)	35
CfoI	GCGC	1 cut(s)	215
Cfr13I	GGNCC	2 cut(s)	157, 380
Cfr42I	CCGCGG	1 cut(s)	51
Csp6I	GTAC	1 cut(s)	463
CviAII	CATG	3 cut(s)	257, 337, 583
CviQI	GTAC	1 cut(s)	463
DdeI	CTNAG	3 cut(s)	161, 216, 539
DpnI	GATC	2 cut(s)	127, 273
DpnII	GATC	2 cut(s)	125, 271
EaeI	YGGCCR	1 cut(s)	51
Eam1104I	CTCTTC	1 cut(s)	115
EarI	CTCTTC	1 cut(s)	115
Eco47I	GGWCC	1 cut(s)	157
Eco47III	AGCGCT	1 cut(s)	214
Eco72I	CACGTG	1 cut(s)	371
Eco81I	CCTNAGG	1 cut(s)	161
EcoRI	GAATTC	1 cut(s)	598
EcoRII	CCWGG	1 cut(s)	531
EcoT22I	ATGCAT	1 cut(s)	359
FaeI	CATG	3 cut(s)	260, 340, 586
FaiI	YATR	9 cut(s)	26, 258, 324, 338, 355, 474, 512, 519, 584
FaqI	GGGAC	1 cut(s)	549
FatI	CATG	3 cut(s)	256, 336, 582
FblI	GTMKAC	1 cut(s)	150
Fnu4HI	GCNGC	9 cut(s)	48, 51, 66, 183, 192, 195, 435, 438, 570
Fsp4HI	GCNGC	9 cut(s)	48, 51, 66, 183, 192, 195, 435, 438, 570
FspBI	CTAG	4 cut(s)	117, 140, 395, 425
GlaI	GCGC	1 cut(s)	214
GluI	GCNGC	9 cut(s)	48, 51, 66, 183, 192, 195, 435, 438, 570
GsuI	CTGGAG	1 cut(s)	233
HaeII	RGCGCY	1 cut(s)	216
HaeIII	GGCC	4 cut(s)	47, 53, 330, 382
HapII	CCGG	1 cut(s)	441
HhaI	GCGC	1 cut(s)	215
Hin1II	CATG	3 cut(s)	260, 340, 586
Hin6I	GCGC	1 cut(s)	213
HinP1I	GCGC	1 cut(s)	213
HinfI	GANTC	3 cut(s)	5, 223, 488
HpaII	CCGG	1 cut(s)	441
HphI	GGTGA	1 cut(s)	424
Hpy166II	GTNNAC	1 cut(s)	151
Hpy188III	TCNNGA	1 cut(s)	277
Hpy8I	GTNNAC	1 cut(s)	151
Hpy99I	CGWCG	1 cut(s)	95
HpyAV	CCTTC	3 cut(s)	65, 241, 352
HpyCH4III	ACNGT	3 cut(s)	203, 243, 412
HpyCH4IV	ACGT	2 cut(s)	287, 370
HpyCH4V	TGCA	7 cut(s)	41, 68, 302, 357, 374, 455, 514
HpyF3I	CTNAG	3 cut(s)	161, 216, 539
HpySE526I	ACGT	2 cut(s)	287, 370
Hsp92II	CATG	3 cut(s)	260, 340, 586
HspAI	GCGC	1 cut(s)	213
KspI	CCGCGG	1 cut(s)	51
Kzo9I	GATC	2 cut(s)	125, 271
LmnI	GCTCC	2 cut(s)	82, 443
LpnPI	CCDG	8 cut(s)	148, 187, 263, 454, 481, 518, 545, 575
Lsp1109I	GCAGC	7 cut(s)	52, 169, 178, 181, 421, 424, 556
LweI	GCATC	2 cut(s)	28, 366
MaeI	CTAG	4 cut(s)	117, 140, 395, 425
MaeII	ACGT	2 cut(s)	287, 370
MaeIII	GTNAC	2 cut(s)	31, 404
MalI	GATC	2 cut(s)	127, 273
MboI	GATC	2 cut(s)	125, 271
MboII	GAAGA	4 cut(s)	132, 218, 226, 441
MflI	RGATCY	1 cut(s)	125
MhlI	GDGCHC	1 cut(s)	79
MluCI	AATT	2 cut(s)	481, 598
MlyI	GAGTC	1 cut(s)	482
MmeI	TCCRAC	1 cut(s)	298
MnlI	CCTC	5 cut(s)	116, 170, 257, 341, 378
Mph1103I	ATGCAT	1 cut(s)	359
MseI	TTAA	2 cut(s)	209, 615
MslI	CAYNNNNRTG	1 cut(s)	413
MspA1I	CMGCKG	1 cut(s)	50
MspCI	CTTAAG	1 cut(s)	614
MspI	CCGG	1 cut(s)	441
MspR9I	CCNGG	1 cut(s)	533
MvaI	CCWGG	1 cut(s)	533
MvnI	CGCG	1 cut(s)	50
NdeII	GATC	2 cut(s)	125, 271
NlaIII	CATG	3 cut(s)	260, 340, 586
NlaIV	GGNNCC	2 cut(s)	127, 172
NmeAIII	GCCGAG	1 cut(s)	408
NmuCI	GTSAC	1 cut(s)	404
NsiI	ATGCAT	1 cut(s)	359
PfeI	GAWTC	1 cut(s)	223
PflFI	GACNNNGTC	1 cut(s)	155
PkrI	GCNGC	9 cut(s)	49, 52, 67, 184, 193, 196, 436, 439, 571
PleI	GAGTC	1 cut(s)	482
PmaCI	CACGTG	1 cut(s)	371
PmlI	CACGTG	1 cut(s)	371
PpsI	GAGTC	1 cut(s)	482
Ppu21I	YACGTR	1 cut(s)	371
Psp6I	CCWGG	1 cut(s)	531
PspCI	CACGTG	1 cut(s)	371
PspGI	CCWGG	1 cut(s)	531
PspN4I	GGNNCC	2 cut(s)	127, 172
PspPI	GGNCC	2 cut(s)	157, 380
PstI	CTGCAG	1 cut(s)	70
PstNI	CAGNNNCTG	1 cut(s)	35
PsuI	RGATCY	1 cut(s)	125
PsyI	GACNNNGTC	1 cut(s)	155
RsaI	GTAC	1 cut(s)	464
RsaNI	GTAC	1 cut(s)	463
RseI	CAYNNNNRTG	1 cut(s)	413
SacII	CCGCGG	1 cut(s)	51
SaqAI	TTAA	2 cut(s)	209, 615
SatI	GCNGC	9 cut(s)	48, 51, 66, 183, 192, 195, 435, 438, 570
Sau3AI	GATC	2 cut(s)	125, 271
Sau96I	GGNCC	2 cut(s)	157, 380
SchI	GAGTC	1 cut(s)	482
ScrFI	CCNGG	1 cut(s)	533
SduI	GDGCHC	1 cut(s)	79
SetI	ASST	6 cut(s)	61, 76, 290, 373, 436, 448
SfaNI	GCATC	2 cut(s)	28, 366
SfcI	CTRYAG	1 cut(s)	66
Sfr303I	CCGCGG	1 cut(s)	51
SgrBI	CCGCGG	1 cut(s)	51
SinI	GGWCC	1 cut(s)	157
SmiMI	CAYNNNNRTG	1 cut(s)	413
SmlI	CTYRAG	1 cut(s)	614
SmoI	CTYRAG	1 cut(s)	614
SpeI	ACTAGT	1 cut(s)	394
Sse9I	AATT	2 cut(s)	481, 598
SsiI	CCGC	3 cut(s)	48, 50, 572
SspMI	CTAG	4 cut(s)	117, 140, 395, 425
StyD4I	CCNGG	1 cut(s)	531
TaaI	ACNGT	3 cut(s)	203, 243, 412
TaiI	ACGT	2 cut(s)	290, 373
TaqI	TCGA	3 cut(s)	8, 364, 491
TasI	AATT	2 cut(s)	481, 598
TatI	WGTACW	1 cut(s)	462
TauI	GCSGC	2 cut(s)	50, 53
TfiI	GAWTC	1 cut(s)	223
Tru1I	TTAA	2 cut(s)	209, 615
Tru9I	TTAA	2 cut(s)	209, 615
TseFI	GTSAC	1 cut(s)	404
TseI	GCWGC	7 cut(s)	65, 182, 191, 194, 434, 437, 569
Tsp45I	GTSAC	1 cut(s)	404
TspDTI	ATGAA	3 cut(s)	113, 549, 571
TspGWI	ACGGA	1 cut(s)	492
Tth111I	GACNNNGTC	1 cut(s)	155
Vha464I	CTTAAG	1 cut(s)	614
VpaK11BI	GGWCC	1 cut(s)	157
XapI	RAATTY	2 cut(s)	481, 598
XcmI	CCANNNNNNNNNTGG	1 cut(s)	539
XmiI	GTMKAC	1 cut(s)	150
XspI	CTAG	4 cut(s)	117, 140, 395, 425
Zsp2I	ATGCAT	1 cut(s)	359

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.