MD11G1183900.v1.1

Calmodulin mediates the control of a large number of enzymes, ion channels and other proteins by Ca(2 ). Among the enzymes to be stimulated by the calmodulin-Ca(2 ) complex are a number of protein kinases and phosphatases

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0017043
Physical Location & Seq
Forward (+)
24108284 .. 24110151
1868 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1183900.v1.1.491

Sequence Viewer

Length: 450 bp
ATGGCCGATCAGCTCACCGACGACCAGATCTCCGAGTTCAAGGAGGCGTTCAGCCTATTCGACAAGGACGGCGATGGTTGCATCACTACAAAAGAGTTGGGGACTGTCATGCGTTCACTTGGGCAGAACCCAACTGAAGCCGAGCTTCAGGATATGATCAATGAGGTTGATGCTGATGGGAATGGGACCATTGATTTTCCAGAGTTCCTTAACTTGATGGCCCGGAAGATGAAGGACACCGATTCTGAGGAGGAGCTCAAGGAAGCCTTCCGAGTGTTCGATAAGGACCAGAATGGCTTCATTTCTGCTGCTGAGCTTCGTCATGTTATGACAAATCTAGGCGAGAAGCTGACAGATGAGGAAGTTGATGAGATGATTCGTGAGGCTGATGTGGATGGTGATGGGCAGATCAACTATGAGGAGTTCGTCAAAGTCATGATGGCCAAGTGA

Protein Analysis

150

Amino Acids

16.85

Weight (kDa)

4.11

Isoelectric Point (pI)

24.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AIF-1 PF21008 7 - 76 2.9e-08 Allograft inflammatory factor 1
EF-hand_1 PF00036 12 - 40 3.8e-09 EF hand domain
EF-hand_7 PF13499 12 - 73 1.8e-17 EF-hand domain pair
EF-hand_6 PF13405 12 - 41 2.7e-09 EF-hand domain
EF-hand_9 PF14658 15 - 75 5.5e-10 EF-hand domain
EF-hand_8 PF13833 25 - 75 7.3e-11 EF-hand domain pair
EF-hand_1 PF00036 48 - 75 3.2e-08 EF hand domain
EF-hand_7 PF13499 83 - 147 5.9e-22 EF-hand domain pair
AIF-1 PF21008 84 - 149 2.8e-06 Allograft inflammatory factor 1
EF-hand_1 PF00036 85 - 112 2.5e-09 EF hand domain
EF-hand_6 PF13405 85 - 114 2e-09 EF-hand domain
EF-hand_5 PF13202 86 - 110 1.3e-06 EF hand
EF-hand_9 PF14658 88 - 148 3.3e-07 EF-hand domain
EF-hand_8 PF13833 98 - 146 1.1e-12 EF-hand domain pair
EF-hand_1 PF00036 121 - 148 3.7e-10 EF hand domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 2 cut(s) 3, 441
AcuI CTGAAG 2 cut(s) 131, 156
AgsI TTSAA 1 cut(s) 40
AluBI AGCT 5 cut(s) 13, 145, 256, 316, 349
AluI AGCT 5 cut(s) 13, 145, 256, 316, 349
Alw21I GWGCWC 1 cut(s) 258
AoxI GGCC 3 cut(s) 3, 219, 441
ApeKI GCWGC 1 cut(s) 308
Asp700I GAANNNNTTC 1 cut(s) 296
AspS9I GGNCC 3 cut(s) 186, 220, 286
AsuC2I CCSGG 1 cut(s) 223
AsuHPI GGTGA 2 cut(s) 7, 410
AvaII GGWCC 2 cut(s) 186, 286
BalI TGGCCA 1 cut(s) 443
BanII GRGCYC 1 cut(s) 258
Bbv12I GWGCWC 1 cut(s) 258
BbvI GCAGC 1 cut(s) 295
BccI CCATC 6 cut(s) 68, 170, 211, 389, 395, 433
BceAI ACGGC 1 cut(s) 85
BclI TGATCA 1 cut(s) 156
BcnI CCSGG 1 cut(s) 223
BfaI CTAG 1 cut(s) 338
BglII AGATCT 1 cut(s) 27
BisI GCNGC 1 cut(s) 309
BlpI GCTNAGC 1 cut(s) 312
BlsI GCNGC 1 cut(s) 310
Bme1390I CCNGG 1 cut(s) 223
Bme18I GGWCC 2 cut(s) 186, 286
BmgT120I GGNCC 3 cut(s) 186, 220, 286
BmiI GGNNCC 1 cut(s) 187
BmrFI CCNGG 1 cut(s) 223
BmsI GCATC 2 cut(s) 90, 160
Bpu1102I GCTNAGC 1 cut(s) 312
BpuEI CTTGAG 1 cut(s) 242
BpuMI CCSGG 1 cut(s) 223
BsaXI ACNNNNNCTCC 2 cut(s) 14, 44
BseGI GGATG 1 cut(s) 400
BseMII CTCAG 2 cut(s) 237, 303
BseRI GAGGAG 3 cut(s) 263, 266, 434
BseXI GCAGC 1 cut(s) 295
BshFI GGCC 3 cut(s) 5, 221, 443
BsiHKAI GWGCWC 1 cut(s) 258
BsiSI CCGG 1 cut(s) 223
BslFI GGGAC 2 cut(s) 115, 199
BsmFI GGGAC 2 cut(s) 115, 199
BsnI GGCC 3 cut(s) 5, 221, 443
Bsp1286I GDGCHC 1 cut(s) 258
Bsp143I GATC 4 cut(s) 7, 27, 156, 408
Bsp1720I GCTNAGC 1 cut(s) 312
BspANI GGCC 3 cut(s) 5, 221, 443
BspCNI CTCAG 2 cut(s) 238, 304
BspHI TCATGA 1 cut(s) 435
BspLI GGNNCC 1 cut(s) 187
BssMI GATC 4 cut(s) 7, 27, 156, 408
Bst4CI ACNGT 1 cut(s) 106
BstDEI CTNAG 2 cut(s) 246, 312
BstF5I GGATG 1 cut(s) 400
BstKTI GATC 4 cut(s) 10, 30, 159, 411
BstMBI GATC 4 cut(s) 7, 27, 156, 408
BstMWI GCNNNNNNNGC 1 cut(s) 78
BstSCI CCNGG 1 cut(s) 221
BstV1I GCAGC 1 cut(s) 295
BstX2I RGATCY 1 cut(s) 27
BstYI RGATCY 1 cut(s) 27
BsuRI GGCC 3 cut(s) 5, 221, 443
BtgZI GCGATG 1 cut(s) 87
BtsCI GGATG 1 cut(s) 400
CciI TCATGA 1 cut(s) 435
Cfr13I GGNCC 3 cut(s) 186, 220, 286
CviAII CATG 3 cut(s) 109, 323, 436
DdeI CTNAG 2 cut(s) 246, 312
DpnI GATC 4 cut(s) 9, 29, 158, 410
DpnII GATC 4 cut(s) 7, 27, 156, 408
EaeI YGGCCR 2 cut(s) 3, 441
Ecl136II GAGCTC 1 cut(s) 256
Eco24I GRGCYC 1 cut(s) 258
Eco47I GGWCC 2 cut(s) 186, 286
Eco53kI GAGCTC 1 cut(s) 256
Eco57I CTGAAG 2 cut(s) 131, 156
EcoICRI GAGCTC 1 cut(s) 256
EcoT38I GRGCYC 1 cut(s) 258
FaeI CATG 3 cut(s) 112, 326, 439
FaiI YATR 6 cut(s) 110, 155, 324, 329, 417, 437
FalI AAGNNNNNCTT 4 cut(s) 129, 161, 251, 283
FaqI GGGAC 2 cut(s) 115, 199
FatI CATG 3 cut(s) 108, 322, 435
FbaI TGATCA 1 cut(s) 156
Fnu4HI GCNGC 1 cut(s) 309
FokI GGATG 1 cut(s) 407
FriOI GRGCYC 1 cut(s) 258
Fsp4HI GCNGC 1 cut(s) 309
FspBI CTAG 1 cut(s) 338
GluI GCNGC 1 cut(s) 309
HaeIII GGCC 3 cut(s) 5, 221, 443
HapII CCGG 1 cut(s) 223
Hin1II CATG 3 cut(s) 112, 326, 439
HinfI GANTC 2 cut(s) 242, 376
HpaII CCGG 1 cut(s) 223
HphI GGTGA 2 cut(s) 7, 410
Hpy166II GTNNAC 1 cut(s) 116
Hpy188I TCNGA 3 cut(s) 34, 247, 272
Hpy188III TCNNGA 4 cut(s) 149, 200, 380, 436
Hpy8I GTNNAC 1 cut(s) 116
Hpy99I CGWCG 1 cut(s) 23
HpyAV CCTTC 2 cut(s) 226, 277
HpyCH4III ACNGT 1 cut(s) 106
HpyCH4V TGCA 1 cut(s) 81
HpyF10VI GCNNNNNNNGC 1 cut(s) 78
HpyF3I CTNAG 2 cut(s) 246, 312
Hsp92II CATG 3 cut(s) 112, 326, 439
Ksp22I TGATCA 1 cut(s) 156
Kzo9I GATC 4 cut(s) 7, 27, 156, 408
LmnI GCTCC 1 cut(s) 253
LpnPI CCDG 5 cut(s) 38, 134, 213, 236, 302
Lsp1109I GCAGC 1 cut(s) 295
LweI GCATC 2 cut(s) 90, 160
MaeI CTAG 1 cut(s) 338
MalI GATC 4 cut(s) 9, 29, 158, 410
MboI GATC 4 cut(s) 7, 27, 156, 408
MboII GAAGA 1 cut(s) 238
MflI RGATCY 1 cut(s) 27
MhlI GDGCHC 1 cut(s) 258
MlsI TGGCCA 1 cut(s) 443
MluNI TGGCCA 1 cut(s) 443
MnlI CCTC 7 cut(s) 37, 157, 241, 244, 352, 376, 412
Mox20I TGGCCA 1 cut(s) 443
MroXI GAANNNNTTC 1 cut(s) 296
MscI TGGCCA 1 cut(s) 443
MseI TTAA 1 cut(s) 210
Msp20I TGGCCA 1 cut(s) 443
MspI CCGG 1 cut(s) 223
MspR9I CCNGG 1 cut(s) 223
MwoI GCNNNNNNNGC 1 cut(s) 78
NciI CCSGG 1 cut(s) 223
NdeII GATC 4 cut(s) 7, 27, 156, 408
NlaIII CATG 3 cut(s) 112, 326, 439
NlaIV GGNNCC 1 cut(s) 187
NmeAIII GCCGAG 1 cut(s) 166
PagI TCATGA 1 cut(s) 435
PdmI GAANNNNTTC 1 cut(s) 296
PfeI GAWTC 2 cut(s) 242, 376
PkrI GCNGC 1 cut(s) 310
Psp124BI GAGCTC 1 cut(s) 258
PspN4I GGNNCC 1 cut(s) 187
PspPI GGNCC 3 cut(s) 186, 220, 286
PsuI RGATCY 1 cut(s) 27
SacI GAGCTC 1 cut(s) 258
SaqAI TTAA 1 cut(s) 210
SatI GCNGC 1 cut(s) 309
Sau3AI GATC 4 cut(s) 7, 27, 156, 408
Sau96I GGNCC 3 cut(s) 186, 220, 286
ScrFI CCNGG 1 cut(s) 223
SduI GDGCHC 1 cut(s) 258
SetI ASST 6 cut(s) 15, 147, 168, 258, 318, 351
SfaNI GCATC 2 cut(s) 90, 160
SinI GGWCC 2 cut(s) 186, 286
SmlI CTYRAG 1 cut(s) 257
SmoI CTYRAG 1 cut(s) 257
SspMI CTAG 1 cut(s) 338
SstI GAGCTC 1 cut(s) 258
StyD4I CCNGG 1 cut(s) 221
TaaI ACNGT 1 cut(s) 106
TaqI TCGA 2 cut(s) 60, 279
TfiI GAWTC 2 cut(s) 242, 376
Tru1I TTAA 1 cut(s) 210
Tru9I TTAA 1 cut(s) 210
TseI GCWGC 1 cut(s) 308
TspDTI ATGAA 2 cut(s) 245, 289
VpaK11BI GGWCC 2 cut(s) 186, 286
XmnI GAANNNNTTC 1 cut(s) 296
XspI CTAG 1 cut(s) 338
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.