Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0017043

Physical Location & Seq

Genomic Coordinates Reverse (-)

3806435 .. 3808792

Gene Structure 2358 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G024100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGGCGGATCAGCTGACCGACGATCAGATCTCTGAGTTCAAGGAAGCCTTCAGCCTATTCGACAAGGATGGCGATGGCTGTATCACTACCAAGGAACTCGGGACTGTGATGAGATCATTGGGGCAGAACCCAACTGAGGCAGAGCTCCAGGACATGATTAATGAAGTGGATGCTGATGGTAATGGAACCATCGACTTTCCTGAGTTCTTAAACCTGATGGCCAGGAAGATGAAAGACACCGACTCTGAGGAGGAGCTGAAAGAGGCTTTCAGAGTTTTTGATAAGGATCAGAATGGCTTCATTTCTGCTGCTGAGCTGCGCCATGTGATGACAAATCTGGGGGAGAAGCTCACTGACGAGGAAGTTGATGAGATGATTCGTGAGGCTGATGTTGATGGTGATGGCCAGATAAATTACGAGGAGTTTGTTAAGGTGATGATGGCTAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005513 GO:0008150 GO:0009593 GO:0010035 GO:0010038 GO:0010099 GO:0042221 GO:0048580 GO:0048583 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0051592 GO:0051606 GO:0065007 GO:2000026 GO:2000030

KEGG Pathways

Metabolic & Signaling

ko04014 ko04015 ko04016 ko04020 ko04022 ko04024 ko04070 ko04114 ko04218 ko04261 ko04270 ko04371 ko04626 ko04713 ko04720 ko04722 ko04728 ko04740 ko04744 ko04745 ko04750 ko04910 ko04912 ko04915 ko04916 ko04921 ko04922 ko04924 ko04925 ko04970 ko04971 ko05010 ko05031 ko05034 ko05133 ko05152 ko05167 ko05200 ko05214 ko05418 map04014 map04015 map04016 map04020 map04022 map04024 map04070 map04114 map04218 map04261 map04270 map04371 map04626 map04713 map04720 map04722 map04728 map04740 map04744 map04745 map04750 map04910 map04912 map04915 map04916 map04921 map04922 map04924 map04925 map04970 map04971 map05010 map05031 map05034 map05133 map05152 map05167 map05200 map05214 map05418

Pfam Domains

Protein Families

EF-hand_1

Protein Analysis

150

Amino Acids

16.85

Weight (kDa)

4.11

Isoelectric Point (pI)

24.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017043)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G37780
malus_domestica	MD03G1163500.v1.1 MD11G1183900.v1.1 MD12G1111300.v1.1 MD14G1092700.v1.1
prunus_persica	Prupe.4G269100_v2.0.a1 Prupe.4G269100_v2.0.a1 Prupe.4G269100_v2.0.a1 Prupe.7G024100_v2.0.a1
pyrus_communis	pycom12g09360 pycom5153684g00280
rosa_laevigata	RLG00000022641 RLG00000022644

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	5
AclWI	GGATC	2 cut(s)	15, 294
AcoI	YGGCCR	2 cut(s)	219, 403
AcuI	CTGAAG	1 cut(s)	34
AfiI	CCNNNNNNNGG	1 cut(s)	136
AgsI	TTSAA	1 cut(s)	40
AjnI	CCWGG	2 cut(s)	147, 221
AluBI	AGCT	5 cut(s)	13, 145, 256, 316, 349
AluI	AGCT	5 cut(s)	13, 145, 256, 316, 349
Alw21I	GWGCWC	1 cut(s)	147
AlwI	GGATC	2 cut(s)	15, 294
Ama87I	CYCGRG	1 cut(s)	98
AoxI	GGCC	2 cut(s)	219, 403
ApeKI	GCWGC	2 cut(s)	308, 316
AseI	ATTAAT	1 cut(s)	159
Asp700I	GAANNNNTTC	1 cut(s)	296
AspLEI	GCGC	1 cut(s)	321
AsuHPI	GGTGA	2 cut(s)	410, 445
AvaI	CYCGRG	1 cut(s)	98
BalI	TGGCCA	2 cut(s)	221, 405
BanII	GRGCYC	1 cut(s)	147
Bbv12I	GWGCWC	1 cut(s)	147
BbvI	GCAGC	2 cut(s)	295, 303
BccI	CCATC	8 cut(s)	62, 68, 170, 197, 211, 389, 395, 433
BciT130I	CCWGG	2 cut(s)	149, 223
BglII	AGATCT	1 cut(s)	27
BisI	GCNGC	2 cut(s)	309, 317
BlpI	GCTNAGC	1 cut(s)	312
BlsI	GCNGC	2 cut(s)	310, 318
Bme1390I	CCNGG	2 cut(s)	149, 223
BmeT110I	CYCGRG	1 cut(s)	98
BmiI	GGNNCC	1 cut(s)	187
BmrFI	CCNGG	2 cut(s)	149, 223
BmsI	GCATC	1 cut(s)	160
BpmI	CTGGAG	1 cut(s)	131
Bpu1102I	GCTNAGC	1 cut(s)	312
BsaBI	GATNNNNATC	1 cut(s)	285
BsaJI	CCNNGG	1 cut(s)	90
Bsc4I	CCNNNNNNNGG	1 cut(s)	136
Bse8I	GATNNNNATC	1 cut(s)	285
BseBI	CCWGG	2 cut(s)	149, 223
BseDI	CCNNGG	1 cut(s)	90
BseGI	GGATG	2 cut(s)	73, 175
BseJI	GATNNNNATC	1 cut(s)	285
BseLI	CCNNNNNNNGG	1 cut(s)	136
BseMII	CTCAG	5 cut(s)	24, 126, 192, 237, 303
BseRI	GAGGAG	3 cut(s)	263, 266, 434
BseXI	GCAGC	2 cut(s)	295, 303
BshFI	GGCC	2 cut(s)	221, 405
BsiHKAI	GWGCWC	1 cut(s)	147
BsiHKCI	CYCGRG	1 cut(s)	98
BslFI	GGGAC	1 cut(s)	115
BslI	CCNNNNNNNGG	1 cut(s)	136
BsmFI	GGGAC	1 cut(s)	115
BsnI	GGCC	2 cut(s)	221, 405
BsoBI	CYCGRG	1 cut(s)	98
Bsp1286I	GDGCHC	1 cut(s)	147
Bsp143I	GATC	5 cut(s)	7, 22, 27, 113, 286
Bsp1720I	GCTNAGC	1 cut(s)	312
BspACI	CCGC	1 cut(s)	5
BspANI	GGCC	2 cut(s)	221, 405
BspCNI	CTCAG	5 cut(s)	25, 127, 193, 238, 304
BspLI	GGNNCC	1 cut(s)	187
BspPI	GGATC	2 cut(s)	15, 294
BssECI	CCNNGG	1 cut(s)	90
BssMI	GATC	5 cut(s)	7, 22, 27, 113, 286
BssT1I	CCWWGG	1 cut(s)	90
Bst2UI	CCWGG	2 cut(s)	149, 223
Bst4CI	ACNGT	1 cut(s)	106
BstDEI	CTNAG	6 cut(s)	33, 135, 201, 246, 312, 444
BstF5I	GGATG	2 cut(s)	73, 175
BstHHI	GCGC	1 cut(s)	321
BstKTI	GATC	5 cut(s)	10, 25, 30, 116, 289
BstMBI	GATC	5 cut(s)	7, 22, 27, 113, 286
BstNI	CCWGG	2 cut(s)	149, 223
BstSCI	CCNGG	2 cut(s)	147, 221
BstV1I	GCAGC	2 cut(s)	295, 303
BstX2I	RGATCY	1 cut(s)	27
BstYI	RGATCY	1 cut(s)	27
BsuRI	GGCC	2 cut(s)	221, 405
BtgZI	GCGATG	1 cut(s)	87
BtsCI	GGATG	2 cut(s)	73, 175
BtsIMutI	CAGTG	1 cut(s)	351
CfoI	GCGC	1 cut(s)	321
CviAII	CATG	2 cut(s)	154, 323
DdeI	CTNAG	6 cut(s)	33, 135, 201, 246, 312, 444
DpnI	GATC	5 cut(s)	9, 24, 29, 115, 288
DpnII	GATC	5 cut(s)	7, 22, 27, 113, 286
EaeI	YGGCCR	2 cut(s)	219, 403
EciI	GGCGGA	1 cut(s)	20
Ecl136II	GAGCTC	1 cut(s)	145
Eco130I	CCWWGG	1 cut(s)	90
Eco24I	GRGCYC	1 cut(s)	147
Eco53kI	GAGCTC	1 cut(s)	145
Eco57I	CTGAAG	1 cut(s)	34
Eco88I	CYCGRG	1 cut(s)	98
EcoICRI	GAGCTC	1 cut(s)	145
EcoRII	CCWGG	2 cut(s)	147, 221
EcoT14I	CCWWGG	1 cut(s)	90
EcoT38I	GRGCYC	1 cut(s)	147
ErhI	CCWWGG	1 cut(s)	90
FaeI	CATG	2 cut(s)	157, 326
FaiI	YATR	2 cut(s)	155, 324
FalI	AAGNNNNNCTT	2 cut(s)	32, 64
FaqI	GGGAC	1 cut(s)	115
FatI	CATG	2 cut(s)	153, 322
Fnu4HI	GCNGC	2 cut(s)	309, 317
FokI	GGATG	2 cut(s)	80, 182
FriOI	GRGCYC	1 cut(s)	147
Fsp4HI	GCNGC	2 cut(s)	309, 317
GlaI	GCGC	1 cut(s)	320
GluI	GCNGC	2 cut(s)	309, 317
GsuI	CTGGAG	1 cut(s)	131
HaeIII	GGCC	2 cut(s)	221, 405
HhaI	GCGC	1 cut(s)	321
Hin1II	CATG	2 cut(s)	157, 326
Hin6I	GCGC	1 cut(s)	319
HinP1I	GCGC	1 cut(s)	319
HinfI	GANTC	2 cut(s)	242, 376
HphI	GGTGA	2 cut(s)	410, 445
Hpy188I	TCNGA	5 cut(s)	27, 34, 247, 272, 291
Hpy188III	TCNNGA	3 cut(s)	100, 200, 380
Hpy99I	CGWCG	1 cut(s)	23
HpyAV	CCTTC	1 cut(s)	58
HpyCH4III	ACNGT	1 cut(s)	106
HpyF3I	CTNAG	6 cut(s)	33, 135, 201, 246, 312, 444
Hsp92II	CATG	2 cut(s)	157, 326
HspAI	GCGC	1 cut(s)	319
Kzo9I	GATC	5 cut(s)	7, 22, 27, 113, 286
LmnI	GCTCC	2 cut(s)	150, 253
LpnPI	CCDG	8 cut(s)	134, 161, 208, 213, 227, 235, 323, 419
Lsp1109I	GCAGC	2 cut(s)	295, 303
LweI	GCATC	1 cut(s)	160
MalI	GATC	5 cut(s)	9, 24, 29, 115, 288
MboI	GATC	5 cut(s)	7, 22, 27, 113, 286
MboII	GAAGA	1 cut(s)	238
MflI	RGATCY	1 cut(s)	27
MhlI	GDGCHC	1 cut(s)	147
MlsI	TGGCCA	2 cut(s)	221, 405
MluCI	AATT	1 cut(s)	412
MluNI	TGGCCA	2 cut(s)	221, 405
MlyI	GAGTC	1 cut(s)	236
MnlI	CCTC	7 cut(s)	130, 241, 244, 256, 352, 376, 412
Mox20I	TGGCCA	2 cut(s)	221, 405
MroXI	GAANNNNTTC	1 cut(s)	296
MscI	TGGCCA	2 cut(s)	221, 405
MseI	TTAA	3 cut(s)	159, 209, 429
Msp20I	TGGCCA	2 cut(s)	221, 405
MspA1I	CMGCKG	1 cut(s)	13
MspR9I	CCNGG	2 cut(s)	149, 223
MvaI	CCWGG	2 cut(s)	149, 223
NdeII	GATC	5 cut(s)	7, 22, 27, 113, 286
NlaIII	CATG	2 cut(s)	157, 326
NlaIV	GGNNCC	1 cut(s)	187
PdmI	GAANNNNTTC	1 cut(s)	296
PfeI	GAWTC	1 cut(s)	376
PfoI	TCCNGGA	1 cut(s)	147
PkrI	GCNGC	2 cut(s)	310, 318
PleI	GAGTC	1 cut(s)	236
PpsI	GAGTC	1 cut(s)	236
PshBI	ATTAAT	1 cut(s)	159
Psp124BI	GAGCTC	1 cut(s)	147
Psp6I	CCWGG	2 cut(s)	147, 221
PspGI	CCWGG	2 cut(s)	147, 221
PspN4I	GGNNCC	1 cut(s)	187
PsuI	RGATCY	1 cut(s)	27
PvuII	CAGCTG	1 cut(s)	13
SacI	GAGCTC	1 cut(s)	147
SaqAI	TTAA	3 cut(s)	159, 209, 429
SatI	GCNGC	2 cut(s)	309, 317
Sau3AI	GATC	5 cut(s)	7, 22, 27, 113, 286
SchI	GAGTC	1 cut(s)	236
ScrFI	CCNGG	2 cut(s)	149, 223
SduI	GDGCHC	1 cut(s)	147
SetI	ASST	7 cut(s)	15, 147, 216, 258, 318, 351, 435
SfaNI	GCATC	1 cut(s)	160
Sse9I	AATT	1 cut(s)	412
SsiI	CCGC	1 cut(s)	5
SstI	GAGCTC	1 cut(s)	147
StyD4I	CCNGG	2 cut(s)	147, 221
StyI	CCWWGG	1 cut(s)	90
TaaI	ACNGT	1 cut(s)	106
TaqI	TCGA	2 cut(s)	60, 192
TaqII	GACCGA	1 cut(s)	32
TasI	AATT	1 cut(s)	412
TfiI	GAWTC	1 cut(s)	376
Tru1I	TTAA	3 cut(s)	159, 209, 429
Tru9I	TTAA	3 cut(s)	159, 209, 429
TscAI	CASTG	1 cut(s)	358
TseI	GCWGC	2 cut(s)	308, 316
TspDTI	ATGAA	3 cut(s)	177, 245, 289
TspRI	CASTG	1 cut(s)	358
VspI	ATTAAT	1 cut(s)	159
XmnI	GAANNNNTTC	1 cut(s)	296

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.