RLG00000022641

Calmodulin mediates the control of a large number of enzymes, ion channels and other proteins by Ca(2 ). Among the enzymes to be stimulated by the calmodulin-Ca(2 ) complex are a number of protein kinases and phosphatases

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0017043
Physical Location & Seq
Reverse (-)
6101934 .. 6103889
1956 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000022641

Sequence Viewer

Length: 450 bp
ATGGCCGATCAACTCACCGATGATCAGATCTCTGAGTTCAAGGAAGCCTTCAGCCTCTTCGACAAGGACGGCGATGGTTGTATCACTACCAAGGAGCTTGGGACTGTCATGAGGTCACTGGGCCAGAACCCAACCGAGGCTGAGCTCCAGGACATGATCAATGAAGTGGATGCTGATGGTAATGGGACCATCGATTTTCCTGAATTCTTAAACCTAATGGCAAGGAAGATGAAAGACACCGACTCTGAGGAGGAGTTGAAAGAGGCTTTTAGAGTTTTTGACAAGGATCAGAATGGTTTCATATCTGCTGCTGAGCTGCGTCATGTGATGACAAATCTTGGAGAGAAGCTCACTGATGAGGAAGTAGATGAGATGATTCGCGAGGCTGATGTTGATGGTGATGGACAGATAAATTATGAAGAGTTTGTGAAGGTGATGATGGCAAAGTGA

Protein Analysis

150

Amino Acids

16.85

Weight (kDa)

4.11

Isoelectric Point (pI)

24.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AIF-1 PF21008 7 - 76 2.9e-08 Allograft inflammatory factor 1
EF-hand_1 PF00036 12 - 40 3.8e-09 EF hand domain
EF-hand_7 PF13499 12 - 73 1.8e-17 EF-hand domain pair
EF-hand_6 PF13405 12 - 41 2.7e-09 EF-hand domain
EF-hand_9 PF14658 15 - 75 5.5e-10 EF-hand domain
EF-hand_8 PF13833 25 - 75 7.3e-11 EF-hand domain pair
EF-hand_1 PF00036 48 - 75 3.2e-08 EF hand domain
EF-hand_7 PF13499 83 - 147 5.9e-22 EF-hand domain pair
AIF-1 PF21008 84 - 149 2.8e-06 Allograft inflammatory factor 1
EF-hand_1 PF00036 85 - 112 2.5e-09 EF hand domain
EF-hand_6 PF13405 85 - 114 2e-09 EF-hand domain
EF-hand_5 PF13202 86 - 110 1.3e-06 EF hand
EF-hand_9 PF14658 88 - 148 3.3e-07 EF-hand domain
EF-hand_8 PF13833 98 - 146 1.1e-12 EF-hand domain pair
EF-hand_1 PF00036 121 - 148 3.7e-10 EF hand domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 381
AclWI GGATC 1 cut(s) 294
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 203
AcuI CTGAAG 1 cut(s) 34
AfiI CCNNNNNNNGG 1 cut(s) 136
AgsI TTSAA 2 cut(s) 40, 259
AjnI CCWGG 1 cut(s) 147
AluBI AGCT 4 cut(s) 97, 145, 316, 349
AluI AGCT 4 cut(s) 97, 145, 316, 349
Alw21I GWGCWC 1 cut(s) 147
AlwI GGATC 1 cut(s) 294
AoxI GGCC 2 cut(s) 3, 121
ApeKI GCWGC 2 cut(s) 308, 316
ApoI RAATTY 1 cut(s) 203
Asp700I GAANNNNTTC 1 cut(s) 296
AspS9I GGNCC 2 cut(s) 121, 186
AsuHPI GGTGA 3 cut(s) 7, 410, 445
AvaII GGWCC 1 cut(s) 186
BanII GRGCYC 1 cut(s) 147
Bbv12I GWGCWC 1 cut(s) 147
BbvI GCAGC 2 cut(s) 295, 303
BccI CCATC 6 cut(s) 68, 170, 197, 389, 395, 433
BceAI ACGGC 1 cut(s) 85
BciT130I CCWGG 1 cut(s) 149
BclI TGATCA 2 cut(s) 22, 156
BglII AGATCT 1 cut(s) 27
BisI GCNGC 2 cut(s) 309, 317
BlpI GCTNAGC 2 cut(s) 141, 312
BlsI GCNGC 2 cut(s) 310, 318
Bme1390I CCNGG 1 cut(s) 149
Bme18I GGWCC 1 cut(s) 186
BmgT120I GGNCC 2 cut(s) 121, 186
BmiI GGNNCC 1 cut(s) 187
BmrFI CCNGG 1 cut(s) 149
BmrI ACTGGG 1 cut(s) 128
BmsI GCATC 1 cut(s) 160
BmuI ACTGGG 1 cut(s) 128
BplI GAGNNNNNCTC 2 cut(s) 333, 365
BpmI CTGGAG 1 cut(s) 131
Bpu1102I GCTNAGC 2 cut(s) 141, 312
Bsa29I ATCGAT 1 cut(s) 192
BsaJI CCNNGG 2 cut(s) 90, 135
Bsc4I CCNNNNNNNGG 1 cut(s) 136
Bse1I ACTGG 1 cut(s) 123
BseBI CCWGG 1 cut(s) 149
BseCI ATCGAT 1 cut(s) 192
BseDI CCNNGG 2 cut(s) 90, 135
BseGI GGATG 1 cut(s) 175
BseLI CCNNNNNNNGG 1 cut(s) 136
BseMII CTCAG 4 cut(s) 24, 132, 237, 303
BseNI ACTGG 1 cut(s) 123
BseRI GAGGAG 2 cut(s) 263, 266
BseXI GCAGC 2 cut(s) 295, 303
Bsh1236I CGCG 1 cut(s) 381
BshFI GGCC 2 cut(s) 5, 123
BshVI ATCGAT 1 cut(s) 192
BsiHKAI GWGCWC 1 cut(s) 147
BslFI GGGAC 2 cut(s) 115, 199
BslI CCNNNNNNNGG 1 cut(s) 136
BsmFI GGGAC 2 cut(s) 115, 199
BsnI GGCC 2 cut(s) 5, 123
Bsp1286I GDGCHC 1 cut(s) 147
Bsp143I GATC 5 cut(s) 7, 22, 27, 156, 286
Bsp1720I GCTNAGC 2 cut(s) 141, 312
Bsp68I TCGCGA 1 cut(s) 381
BspANI GGCC 2 cut(s) 5, 123
BspCNI CTCAG 4 cut(s) 25, 133, 238, 304
BspDI ATCGAT 1 cut(s) 192
BspFNI CGCG 1 cut(s) 381
BspHI TCATGA 1 cut(s) 108
BspLI GGNNCC 1 cut(s) 187
BspPI GGATC 1 cut(s) 294
BsrI ACTGG 1 cut(s) 123
BssECI CCNNGG 2 cut(s) 90, 135
BssMI GATC 5 cut(s) 7, 22, 27, 156, 286
BssT1I CCWWGG 1 cut(s) 90
Bst2UI CCWGG 1 cut(s) 149
Bst4CI ACNGT 1 cut(s) 106
Bst6I CTCTTC 2 cut(s) 62, 414
BstDEI CTNAG 4 cut(s) 33, 141, 246, 312
BstF5I GGATG 1 cut(s) 175
BstFNI CGCG 1 cut(s) 381
BstKTI GATC 5 cut(s) 10, 25, 30, 159, 289
BstMBI GATC 5 cut(s) 7, 22, 27, 156, 286
BstNI CCWGG 1 cut(s) 149
BstSCI CCNGG 1 cut(s) 147
BstUI CGCG 1 cut(s) 381
BstV1I GCAGC 2 cut(s) 295, 303
BstX2I RGATCY 1 cut(s) 27
BstYI RGATCY 1 cut(s) 27
Bsu15I ATCGAT 1 cut(s) 192
BsuRI GGCC 2 cut(s) 5, 123
BsuTUI ATCGAT 1 cut(s) 192
BtgZI GCGATG 1 cut(s) 87
BtsCI GGATG 1 cut(s) 175
BtsIMutI CAGTG 2 cut(s) 116, 351
BtuMI TCGCGA 1 cut(s) 381
CciI TCATGA 1 cut(s) 108
Cfr13I GGNCC 2 cut(s) 121, 186
ClaI ATCGAT 1 cut(s) 192
CseI GACGC 1 cut(s) 308
CviAII CATG 3 cut(s) 109, 154, 323
DdeI CTNAG 4 cut(s) 33, 141, 246, 312
DpnI GATC 5 cut(s) 9, 24, 29, 158, 288
DpnII GATC 5 cut(s) 7, 22, 27, 156, 286
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 2 cut(s) 62, 414
EarI CTCTTC 2 cut(s) 62, 414
Ecl136II GAGCTC 1 cut(s) 145
Eco130I CCWWGG 1 cut(s) 90
Eco24I GRGCYC 1 cut(s) 147
Eco47I GGWCC 1 cut(s) 186
Eco53kI GAGCTC 1 cut(s) 145
Eco57I CTGAAG 1 cut(s) 34
EcoICRI GAGCTC 1 cut(s) 145
EcoRI GAATTC 1 cut(s) 203
EcoRII CCWGG 1 cut(s) 147
EcoT14I CCWWGG 1 cut(s) 90
EcoT38I GRGCYC 1 cut(s) 147
ErhI CCWWGG 1 cut(s) 90
FaeI CATG 3 cut(s) 112, 157, 326
FaiI YATR 5 cut(s) 110, 155, 302, 324, 417
FalI AAGNNNNNCTT 2 cut(s) 32, 64
FaqI GGGAC 2 cut(s) 115, 199
FatI CATG 3 cut(s) 108, 153, 322
FbaI TGATCA 2 cut(s) 22, 156
Fnu4HI GCNGC 2 cut(s) 309, 317
FokI GGATG 1 cut(s) 182
FriOI GRGCYC 1 cut(s) 147
Fsp4HI GCNGC 2 cut(s) 309, 317
GluI GCNGC 2 cut(s) 309, 317
GsuI CTGGAG 1 cut(s) 131
HaeIII GGCC 2 cut(s) 5, 123
HgaI GACGC 1 cut(s) 308
Hin1II CATG 3 cut(s) 112, 157, 326
HinfI GANTC 2 cut(s) 242, 376
HphI GGTGA 3 cut(s) 7, 410, 445
Hpy188I TCNGA 4 cut(s) 27, 34, 247, 291
Hpy188III TCNNGA 3 cut(s) 109, 200, 380
HpyAV CCTTC 2 cut(s) 58, 424
HpyCH4III ACNGT 1 cut(s) 106
HpyF3I CTNAG 4 cut(s) 33, 141, 246, 312
Hsp92II CATG 3 cut(s) 112, 157, 326
Ksp22I TGATCA 2 cut(s) 22, 156
Kzo9I GATC 5 cut(s) 7, 22, 27, 156, 286
LmnI GCTCC 2 cut(s) 94, 150
LpnPI CCDG 5 cut(s) 104, 134, 137, 161, 213
Lsp1109I GCAGC 2 cut(s) 295, 303
LweI GCATC 1 cut(s) 160
MaeIII GTNAC 1 cut(s) 114
MalI GATC 5 cut(s) 9, 24, 29, 158, 288
MboI GATC 5 cut(s) 7, 22, 27, 156, 286
MboII GAAGA 3 cut(s) 49, 238, 431
MflI RGATCY 1 cut(s) 27
MhlI GDGCHC 1 cut(s) 147
MluCI AATT 2 cut(s) 203, 412
MlyI GAGTC 1 cut(s) 236
MnlI CCTC 8 cut(s) 65, 105, 130, 241, 244, 256, 352, 376
MroXI GAANNNNTTC 1 cut(s) 296
MseI TTAA 1 cut(s) 209
MspR9I CCNGG 1 cut(s) 149
MvaI CCWGG 1 cut(s) 149
MvnI CGCG 1 cut(s) 381
NdeII GATC 5 cut(s) 7, 22, 27, 156, 286
NlaIII CATG 3 cut(s) 112, 157, 326
NlaIV GGNNCC 1 cut(s) 187
NmuCI GTSAC 1 cut(s) 114
NruI TCGCGA 1 cut(s) 381
PagI TCATGA 1 cut(s) 108
PdmI GAANNNNTTC 1 cut(s) 296
PfeI GAWTC 1 cut(s) 376
PfoI TCCNGGA 1 cut(s) 147
PkrI GCNGC 2 cut(s) 310, 318
PleI GAGTC 1 cut(s) 236
PpsI GAGTC 1 cut(s) 236
Psp124BI GAGCTC 1 cut(s) 147
Psp6I CCWGG 1 cut(s) 147
PspGI CCWGG 1 cut(s) 147
PspN4I GGNNCC 1 cut(s) 187
PspPI GGNCC 2 cut(s) 121, 186
PsuI RGATCY 1 cut(s) 27
RruI TCGCGA 1 cut(s) 381
SacI GAGCTC 1 cut(s) 147
SaqAI TTAA 1 cut(s) 209
SatI GCNGC 2 cut(s) 309, 317
Sau3AI GATC 5 cut(s) 7, 22, 27, 156, 286
Sau96I GGNCC 2 cut(s) 121, 186
SchI GAGTC 1 cut(s) 236
ScrFI CCNGG 1 cut(s) 149
SduI GDGCHC 1 cut(s) 147
SetI ASST 7 cut(s) 99, 116, 147, 216, 318, 351, 435
SfaNI GCATC 1 cut(s) 160
SinI GGWCC 1 cut(s) 186
Sse9I AATT 2 cut(s) 203, 412
SstI GAGCTC 1 cut(s) 147
StyD4I CCNGG 1 cut(s) 147
StyI CCWWGG 1 cut(s) 90
TaaI ACNGT 1 cut(s) 106
TaqI TCGA 2 cut(s) 60, 192
TasI AATT 2 cut(s) 203, 412
TfiI GAWTC 1 cut(s) 376
Tru1I TTAA 1 cut(s) 209
Tru9I TTAA 1 cut(s) 209
TscAI CASTG 2 cut(s) 123, 358
TseFI GTSAC 1 cut(s) 114
TseI GCWGC 2 cut(s) 308, 316
Tsp45I GTSAC 1 cut(s) 114
TspDTI ATGAA 4 cut(s) 177, 245, 289, 432
TspRI CASTG 2 cut(s) 123, 358
VpaK11BI GGWCC 1 cut(s) 186
XapI RAATTY 1 cut(s) 203
XmnI GAANNNNTTC 1 cut(s) 296
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.