Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

tig00012527_4311101_to_5153684

Orthogroup ID

OG0017043

Physical Location & Seq

Genomic Coordinates Forward (+)

436121 .. 439313

Gene Structure 3193 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom5153684g00280.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGGCCGATCATTTGACCGACGACCAGATCTCTGAGTTCAAGGAGGCTTTCAGCCTATTCGACAAGGACGGCGATGGTTGCATCACTACAAAGGAGTTGGGGACTGTTATGCGTTCACTTGGGCAGAACCCCACTGAAGCTGAGCTTCAGGATATGATCGATGAGGTTGATGCTGATGGGAATGGGACCATCGATTTCCCAGAGTTCCTTAACCTGATGGCCCGGAAGATGAAGGACACTGATTCTGAGGAGGAGCTCAAGGAAGCCTTCCGAGTGTTCGATAAGGACCAGAATGGCTTCATTTCTGCCGCTGAGCTTCGTCATGTTATGACAAATCTAGGCGAGAAGCTGACAGATGAGGAAGTGGATGAGATGATTCGTGAGGCTGATGTGGATGGTGATGGGCAGATCAACTATGAGGAGTTCGTCAAAGTCATGATGGCCAAAAGAATGAGAAGTCGATCAAATCAAAGGAGCGACAGCGTCGGCAGCGCGAATTCAAGGGAGTGCAAGAAAAAGACCAATGGAGGAGAGAACGGGAAGATGAGGCGTCGTTATCGTTGTAGACAACACTTACACGATTGTTCTATCTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04014 ko04015 ko04016 ko04020 ko04022 ko04024 ko04070 ko04114 ko04218 ko04261 ko04270 ko04371 ko04626 ko04713 ko04720 ko04722 ko04728 ko04740 ko04744 ko04745 ko04750 ko04910 ko04912 ko04915 ko04916 ko04921 ko04922 ko04924 ko04925 ko04970 ko04971 ko05010 ko05031 ko05034 ko05133 ko05152 ko05167 ko05200 ko05214 ko05418 map04014 map04015 map04016 map04020 map04022 map04024 map04070 map04114 map04218 map04261 map04270 map04371 map04626 map04713 map04720 map04722 map04728 map04740 map04744 map04745 map04750 map04910 map04912 map04915 map04916 map04921 map04922 map04924 map04925 map04970 map04971 map05010 map05031 map05034 map05133 map05152 map05167 map05200 map05214 map05418

Pfam Domains

Protein Families

EF-hand_1

Protein Analysis

199

Amino Acids

22.59

Weight (kDa)

4.78

Isoelectric Point (pI)

38.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017043)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G37780
malus_domestica	MD03G1163500.v1.1 MD11G1183900.v1.1 MD12G1111300.v1.1 MD14G1092700.v1.1
prunus_persica	Prupe.4G269100_v2.0.a1 Prupe.4G269100_v2.0.a1 Prupe.4G269100_v2.0.a1 Prupe.7G024100_v2.0.a1
pyrus_communis	pycom12g09360 pycom5153684g00280
rosa_laevigata	RLG00000022641 RLG00000022644

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	565
AccII	CGCG	1 cut(s)	494
AciI	CCGC	1 cut(s)	309
AcoI	YGGCCR	2 cut(s)	3, 441
AcsI	RAATTY	1 cut(s)	496
AcuI	CTGAAG	2 cut(s)	131, 156
AcyI	GRCGYC	1 cut(s)	550
AgsI	TTSAA	2 cut(s)	40, 501
AluBI	AGCT	5 cut(s)	140, 145, 256, 316, 349
AluI	AGCT	5 cut(s)	140, 145, 256, 316, 349
Alw21I	GWGCWC	1 cut(s)	258
AoxI	GGCC	3 cut(s)	3, 219, 441
ApeKI	GCWGC	1 cut(s)	489
ApoI	RAATTY	1 cut(s)	496
Asp700I	GAANNNNTTC	1 cut(s)	296
AspLEI	GCGC	1 cut(s)	494
AspS9I	GGNCC	3 cut(s)	186, 220, 286
AsuC2I	CCSGG	1 cut(s)	223
AsuHPI	GGTGA	1 cut(s)	410
AvaII	GGWCC	2 cut(s)	186, 286
BalI	TGGCCA	1 cut(s)	443
BanII	GRGCYC	1 cut(s)	258
Bbv12I	GWGCWC	1 cut(s)	258
BbvI	GCAGC	1 cut(s)	501
BccI	CCATC	7 cut(s)	68, 170, 197, 211, 389, 395, 433
BceAI	ACGGC	1 cut(s)	85
BcnI	CCSGG	1 cut(s)	223
BfaI	CTAG	1 cut(s)	338
BglII	AGATCT	1 cut(s)	27
BisI	GCNGC	2 cut(s)	309, 490
BlpI	GCTNAGC	2 cut(s)	141, 312
BlsI	GCNGC	2 cut(s)	310, 491
Bme1390I	CCNGG	1 cut(s)	223
Bme18I	GGWCC	2 cut(s)	186, 286
BmgT120I	GGNCC	3 cut(s)	186, 220, 286
BmiI	GGNNCC	1 cut(s)	187
BmrFI	CCNGG	1 cut(s)	223
BmsI	GCATC	2 cut(s)	90, 160
Bpu1102I	GCTNAGC	2 cut(s)	141, 312
BpuEI	CTTGAG	1 cut(s)	242
BpuMI	CCSGG	1 cut(s)	223
Bsa29I	ATCGAT	2 cut(s)	159, 192
BsaHI	GRCGYC	1 cut(s)	550
BseCI	ATCGAT	2 cut(s)	159, 192
BseGI	GGATG	2 cut(s)	373, 400
BseMII	CTCAG	4 cut(s)	24, 132, 237, 303
BseRI	GAGGAG	4 cut(s)	263, 266, 434, 543
BseXI	GCAGC	1 cut(s)	501
Bsh1236I	CGCG	1 cut(s)	494
BshFI	GGCC	3 cut(s)	5, 221, 443
BshVI	ATCGAT	2 cut(s)	159, 192
BsiHKAI	GWGCWC	1 cut(s)	258
BsiSI	CCGG	1 cut(s)	223
BslFI	GGGAC	2 cut(s)	115, 199
BsmFI	GGGAC	2 cut(s)	115, 199
BsnI	GGCC	3 cut(s)	5, 221, 443
Bsp1286I	GDGCHC	1 cut(s)	258
Bsp143I	GATC	5 cut(s)	7, 27, 156, 408, 461
Bsp1720I	GCTNAGC	2 cut(s)	141, 312
BspACI	CCGC	1 cut(s)	309
BspANI	GGCC	3 cut(s)	5, 221, 443
BspCNI	CTCAG	4 cut(s)	25, 133, 238, 304
BspDI	ATCGAT	2 cut(s)	159, 192
BspFNI	CGCG	1 cut(s)	494
BspHI	TCATGA	1 cut(s)	435
BspLI	GGNNCC	1 cut(s)	187
BssMI	GATC	5 cut(s)	7, 27, 156, 408, 461
BssNI	GRCGYC	1 cut(s)	550
Bst4CI	ACNGT	1 cut(s)	106
BstACI	GRCGYC	1 cut(s)	550
BstDEI	CTNAG	4 cut(s)	33, 141, 246, 312
BstF5I	GGATG	2 cut(s)	373, 400
BstFNI	CGCG	1 cut(s)	494
BstHHI	GCGC	1 cut(s)	494
BstKTI	GATC	5 cut(s)	10, 30, 159, 411, 464
BstMBI	GATC	5 cut(s)	7, 27, 156, 408, 461
BstMWI	GCNNNNNNNGC	2 cut(s)	78, 489
BstSCI	CCNGG	1 cut(s)	221
BstUI	CGCG	1 cut(s)	494
BstV1I	GCAGC	1 cut(s)	501
BstX2I	RGATCY	1 cut(s)	27
BstYI	RGATCY	1 cut(s)	27
Bsu15I	ATCGAT	2 cut(s)	159, 192
BsuRI	GGCC	3 cut(s)	5, 221, 443
BsuTUI	ATCGAT	2 cut(s)	159, 192
BtgZI	GCGATG	1 cut(s)	87
BtsCI	GGATG	2 cut(s)	373, 400
BtsIMutI	CAGTG	2 cut(s)	132, 237
CciI	TCATGA	1 cut(s)	435
CfoI	GCGC	1 cut(s)	494
Cfr13I	GGNCC	3 cut(s)	186, 220, 286
ClaI	ATCGAT	2 cut(s)	159, 192
CseI	GACGC	2 cut(s)	472, 539
CviAII	CATG	2 cut(s)	323, 436
DdeI	CTNAG	4 cut(s)	33, 141, 246, 312
DpnI	GATC	5 cut(s)	9, 29, 158, 410, 463
DpnII	GATC	5 cut(s)	7, 27, 156, 408, 461
EaeI	YGGCCR	2 cut(s)	3, 441
Ecl136II	GAGCTC	1 cut(s)	256
Eco24I	GRGCYC	1 cut(s)	258
Eco47I	GGWCC	2 cut(s)	186, 286
Eco53kI	GAGCTC	1 cut(s)	256
Eco57I	CTGAAG	2 cut(s)	131, 156
EcoICRI	GAGCTC	1 cut(s)	256
EcoRI	GAATTC	1 cut(s)	496
EcoT38I	GRGCYC	1 cut(s)	258
FaeI	CATG	2 cut(s)	326, 439
FaiI	YATR	6 cut(s)	110, 155, 324, 329, 417, 437
FalI	AAGNNNNNCTT	4 cut(s)	129, 161, 251, 283
FaqI	GGGAC	2 cut(s)	115, 199
FatI	CATG	2 cut(s)	322, 435
FblI	GTMKAC	1 cut(s)	565
Fnu4HI	GCNGC	2 cut(s)	309, 490
FokI	GGATG	2 cut(s)	380, 407
FriOI	GRGCYC	1 cut(s)	258
Fsp4HI	GCNGC	2 cut(s)	309, 490
FspBI	CTAG	1 cut(s)	338
GlaI	GCGC	1 cut(s)	493
GluI	GCNGC	2 cut(s)	309, 490
HaeIII	GGCC	3 cut(s)	5, 221, 443
HapII	CCGG	1 cut(s)	223
HgaI	GACGC	2 cut(s)	472, 539
HhaI	GCGC	1 cut(s)	494
Hin1I	GRCGYC	1 cut(s)	550
Hin1II	CATG	2 cut(s)	326, 439
Hin6I	GCGC	1 cut(s)	492
HinP1I	GCGC	1 cut(s)	492
HinfI	GANTC	2 cut(s)	242, 376
HpaII	CCGG	1 cut(s)	223
HphI	GGTGA	1 cut(s)	410
Hpy166II	GTNNAC	2 cut(s)	116, 566
Hpy188I	TCNGA	3 cut(s)	34, 247, 272
Hpy188III	TCNNGA	3 cut(s)	149, 380, 436
Hpy8I	GTNNAC	2 cut(s)	116, 566
Hpy99I	CGWCG	3 cut(s)	23, 488, 555
HpyAV	CCTTC	2 cut(s)	226, 277
HpyCH4III	ACNGT	1 cut(s)	106
HpyCH4V	TGCA	2 cut(s)	81, 510
HpyF10VI	GCNNNNNNNGC	2 cut(s)	78, 489
HpyF3I	CTNAG	4 cut(s)	33, 141, 246, 312
Hsp92I	GRCGYC	1 cut(s)	550
Hsp92II	CATG	2 cut(s)	326, 439
HspAI	GCGC	1 cut(s)	492
Kzo9I	GATC	5 cut(s)	7, 27, 156, 408, 461
LmnI	GCTCC	2 cut(s)	253, 474
LpnPI	CCDG	6 cut(s)	38, 134, 213, 227, 236, 302
Lsp1109I	GCAGC	1 cut(s)	501
LweI	GCATC	2 cut(s)	90, 160
MaeI	CTAG	1 cut(s)	338
MalI	GATC	5 cut(s)	9, 29, 158, 410, 463
MboI	GATC	5 cut(s)	7, 27, 156, 408, 461
MboII	GAAGA	2 cut(s)	238, 553
MflI	RGATCY	1 cut(s)	27
MhlI	GDGCHC	1 cut(s)	258
MlsI	TGGCCA	1 cut(s)	443
MluCI	AATT	1 cut(s)	496
MluNI	TGGCCA	1 cut(s)	443
MnlI	CCTC	9 cut(s)	37, 157, 241, 244, 352, 376, 412, 521, 540
Mox20I	TGGCCA	1 cut(s)	443
MroXI	GAANNNNTTC	1 cut(s)	296
MscI	TGGCCA	1 cut(s)	443
MseI	TTAA	1 cut(s)	210
Msp20I	TGGCCA	1 cut(s)	443
MspA1I	CMGCKG	1 cut(s)	311
MspI	CCGG	1 cut(s)	223
MspR9I	CCNGG	1 cut(s)	223
MvnI	CGCG	1 cut(s)	494
MwoI	GCNNNNNNNGC	2 cut(s)	78, 489
NciI	CCSGG	1 cut(s)	223
NdeII	GATC	5 cut(s)	7, 27, 156, 408, 461
NlaIII	CATG	2 cut(s)	326, 439
NlaIV	GGNNCC	1 cut(s)	187
PagI	TCATGA	1 cut(s)	435
PdmI	GAANNNNTTC	1 cut(s)	296
PfeI	GAWTC	2 cut(s)	242, 376
PflFI	GACNNNGTC	1 cut(s)	482
PkrI	GCNGC	2 cut(s)	310, 491
Psp124BI	GAGCTC	1 cut(s)	258
PspN4I	GGNNCC	1 cut(s)	187
PspPI	GGNCC	3 cut(s)	186, 220, 286
PsuI	RGATCY	1 cut(s)	27
PsyI	GACNNNGTC	1 cut(s)	482
SacI	GAGCTC	1 cut(s)	258
SaqAI	TTAA	1 cut(s)	210
SatI	GCNGC	2 cut(s)	309, 490
Sau3AI	GATC	5 cut(s)	7, 27, 156, 408, 461
Sau96I	GGNCC	3 cut(s)	186, 220, 286
ScrFI	CCNGG	1 cut(s)	223
SduI	GDGCHC	1 cut(s)	258
SetI	ASST	7 cut(s)	142, 147, 168, 216, 258, 318, 351
SfaNI	GCATC	2 cut(s)	90, 160
SinI	GGWCC	2 cut(s)	186, 286
SmlI	CTYRAG	1 cut(s)	257
SmoI	CTYRAG	1 cut(s)	257
Sse9I	AATT	1 cut(s)	496
SsiI	CCGC	1 cut(s)	309
SspMI	CTAG	1 cut(s)	338
SstI	GAGCTC	1 cut(s)	258
StyD4I	CCNGG	1 cut(s)	221
TaaI	ACNGT	1 cut(s)	106
TaqI	TCGA	5 cut(s)	60, 159, 192, 279, 460
TaqII	GACCGA	1 cut(s)	32
TasI	AATT	1 cut(s)	496
TauI	GCSGC	1 cut(s)	311
TfiI	GAWTC	2 cut(s)	242, 376
Tru1I	TTAA	1 cut(s)	210
Tru9I	TTAA	1 cut(s)	210
TscAI	CASTG	2 cut(s)	139, 244
TseI	GCWGC	1 cut(s)	489
TspDTI	ATGAA	2 cut(s)	245, 289
TspRI	CASTG	2 cut(s)	139, 244
Tth111I	GACNNNGTC	1 cut(s)	482
VpaK11BI	GGWCC	2 cut(s)	186, 286
XapI	RAATTY	1 cut(s)	496
XmiI	GTMKAC	1 cut(s)	565
XmnI	GAANNNNTTC	1 cut(s)	296
XspI	CTAG	1 cut(s)	338

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.