Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0017043

Physical Location & Seq

Genomic Coordinates Reverse (-)

11280194 .. 11281917

Gene Structure 1724 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g09360.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGGCGGATCAACTGACCGACGATCAGATCTCTGAGTTCAAGGAAGCCTTCAGTCTATTCGACAAGGATGGAGATGGCTGTATCACAACTAAGGAGCTTGGCACTGTCATGAGATCATTGGGAGTCTTGCAGAACCCGACTGAGGCAGAGCTCCAGGACATGATCAATGAAGTGGATGCTGATGGTAATGGGACCATTGACTTTCCTGAGTTCTTAAGCCGCATGGCCAGGAAGATGAAGGACACCGACTCTGAGGAGGAGCTGAAAGAGGCTTTCAGAGTGTTTGACAAGGATCAGAATGGCTTCATTTCAGCTGCGGAGCTCCGCCATGTGATGACCAATCTTGGGGAGAAGCTCACAGATGAGGAAGTGGATGAGATGATCCGCGAGGCTGATGTTGATGGGGATGGGCAGATAAATTATGAGGAGTTTGTCAAGGTAATGATGGCTAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005856 GO:0005874 GO:0007154 GO:0007165 GO:0008150 GO:0009987 GO:0015630 GO:0019722 GO:0019932 GO:0023052 GO:0035556 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0099080 GO:0099081 GO:0099512 GO:0099513

KEGG Pathways

Metabolic & Signaling

ko04014 ko04015 ko04016 ko04020 ko04022 ko04024 ko04070 ko04114 ko04218 ko04261 ko04270 ko04371 ko04626 ko04713 ko04720 ko04722 ko04728 ko04740 ko04744 ko04745 ko04750 ko04910 ko04912 ko04915 ko04916 ko04921 ko04922 ko04924 ko04925 ko04970 ko04971 ko05010 ko05031 ko05034 ko05133 ko05152 ko05167 ko05200 ko05214 ko05418 map04014 map04015 map04016 map04020 map04022 map04024 map04070 map04114 map04218 map04261 map04270 map04371 map04626 map04713 map04720 map04722 map04728 map04740 map04744 map04745 map04750 map04910 map04912 map04915 map04916 map04921 map04922 map04924 map04925 map04970 map04971 map05010 map05031 map05034 map05133 map05152 map05167 map05200 map05214 map05418

Pfam Domains

Protein Families

EF-hand_1

Protein Analysis

152

Amino Acids

17.08

Weight (kDa)

4.16

Isoelectric Point (pI)

27.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AIF-1	PF21008	7 - 78	1.4e-06	Allograft inflammatory factor 1
EF-hand_1	PF00036	12 - 40	3.9e-09	EF hand domain
EF-hand_7	PF13499	12 - 75	3.5e-16	EF-hand domain pair
EF-hand_6	PF13405	12 - 41	2.7e-09	EF-hand domain
EF-hand_9	PF14658	15 - 77	6.4e-08	EF-hand domain
EF-hand_8	PF13833	25 - 77	9.6e-10	EF-hand domain pair
EF-hand_1	PF00036	50 - 77	2.2e-07	EF hand domain
EF-hand_7	PF13499	85 - 149	6.1e-22	EF-hand domain pair
AIF-1	PF21008	86 - 151	2.9e-06	Allograft inflammatory factor 1
EF-hand_1	PF00036	87 - 114	2.6e-09	EF hand domain
EF-hand_6	PF13405	87 - 116	2e-09	EF-hand domain
EF-hand_5	PF13202	88 - 112	1.4e-06	EF hand
EF-hand_9	PF14658	90 - 150	3.4e-07	EF-hand domain
EF-hand_8	PF13833	100 - 148	1.1e-12	EF-hand domain pair
EF-hand_1	PF00036	123 - 150	3.8e-10	EF hand domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0017043)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G37780
malus_domestica	MD03G1163500.v1.1 MD11G1183900.v1.1 MD12G1111300.v1.1 MD14G1092700.v1.1
prunus_persica	Prupe.4G269100_v2.0.a1 Prupe.4G269100_v2.0.a1 Prupe.4G269100_v2.0.a1 Prupe.7G024100_v2.0.a1
pyrus_communis	pycom12g09360 pycom5153684g00280
rosa_laevigata	RLG00000022641 RLG00000022644

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	387
AciI	CCGC	5 cut(s)	5, 220, 317, 325, 385
AclWI	GGATC	3 cut(s)	15, 300, 376
AcoI	YGGCCR	1 cut(s)	225
AcuI	CTGAAG	1 cut(s)	34
AfiI	CCNNNNNNNGG	2 cut(s)	142, 345
AflII	CTTAAG	1 cut(s)	214
AgsI	TTSAA	1 cut(s)	40
AjnI	CCWGG	2 cut(s)	153, 227
AluBI	AGCT	6 cut(s)	97, 151, 262, 314, 322, 355
AluI	AGCT	6 cut(s)	97, 151, 262, 314, 322, 355
Alw21I	GWGCWC	2 cut(s)	153, 324
AlwI	GGATC	3 cut(s)	15, 300, 376
AoxI	GGCC	1 cut(s)	225
ApeKI	GCWGC	1 cut(s)	314
Asp700I	GAANNNNTTC	1 cut(s)	302
AspS9I	GGNCC	1 cut(s)	192
AvaII	GGWCC	1 cut(s)	192
BalI	TGGCCA	1 cut(s)	227
BanII	GRGCYC	2 cut(s)	153, 324
Bbv12I	GWGCWC	2 cut(s)	153, 324
BbvI	GCAGC	1 cut(s)	301
BccI	CCATC	6 cut(s)	62, 68, 176, 395, 401, 439
BciT130I	CCWGG	2 cut(s)	155, 229
BclI	TGATCA	1 cut(s)	162
BfrI	CTTAAG	1 cut(s)	214
BglII	AGATCT	1 cut(s)	27
BisI	GCNGC	2 cut(s)	220, 315
BlsI	GCNGC	2 cut(s)	221, 316
Bme1390I	CCNGG	2 cut(s)	155, 229
Bme18I	GGWCC	1 cut(s)	192
BmgT120I	GGNCC	1 cut(s)	192
BmiI	GGNNCC	1 cut(s)	193
BmrFI	CCNGG	2 cut(s)	155, 229
BmsI	GCATC	1 cut(s)	166
BpmI	CTGGAG	1 cut(s)	137
Bsc4I	CCNNNNNNNGG	2 cut(s)	142, 345
BseBI	CCWGG	2 cut(s)	155, 229
BseGI	GGATG	4 cut(s)	73, 181, 379, 412
BseLI	CCNNNNNNNGG	2 cut(s)	142, 345
BseMII	CTCAG	4 cut(s)	24, 132, 198, 243
BseRI	GAGGAG	3 cut(s)	269, 272, 440
BseXI	GCAGC	1 cut(s)	301
Bsh1236I	CGCG	1 cut(s)	387
BshFI	GGCC	1 cut(s)	227
BsiHKAI	GWGCWC	2 cut(s)	153, 324
BslFI	GGGAC	1 cut(s)	205
BslI	CCNNNNNNNGG	2 cut(s)	142, 345
BsmFI	GGGAC	1 cut(s)	205
BsnI	GGCC	1 cut(s)	227
Bsp1286I	GDGCHC	2 cut(s)	153, 324
Bsp143I	GATC	7 cut(s)	7, 22, 27, 113, 162, 292, 381
BspACI	CCGC	5 cut(s)	5, 220, 317, 325, 385
BspANI	GGCC	1 cut(s)	227
BspCNI	CTCAG	4 cut(s)	25, 133, 199, 244
BspFNI	CGCG	1 cut(s)	387
BspHI	TCATGA	1 cut(s)	108
BspLI	GGNNCC	1 cut(s)	193
BspPI	GGATC	3 cut(s)	15, 300, 376
BspTI	CTTAAG	1 cut(s)	214
BssMI	GATC	7 cut(s)	7, 22, 27, 113, 162, 292, 381
Bst2UI	CCWGG	2 cut(s)	155, 229
Bst4CI	ACNGT	1 cut(s)	106
BstAFI	CTTAAG	1 cut(s)	214
BstDEI	CTNAG	6 cut(s)	33, 90, 141, 207, 252, 450
BstF5I	GGATG	4 cut(s)	73, 181, 379, 412
BstFNI	CGCG	1 cut(s)	387
BstKTI	GATC	7 cut(s)	10, 25, 30, 116, 165, 295, 384
BstMBI	GATC	7 cut(s)	7, 22, 27, 113, 162, 292, 381
BstNI	CCWGG	2 cut(s)	155, 229
BstSCI	CCNGG	2 cut(s)	153, 227
BstUI	CGCG	1 cut(s)	387
BstV1I	GCAGC	1 cut(s)	301
BstX2I	RGATCY	1 cut(s)	27
BstYI	RGATCY	1 cut(s)	27
BsuRI	GGCC	1 cut(s)	227
BtsCI	GGATG	4 cut(s)	73, 181, 379, 412
BtsIMutI	CAGTG	1 cut(s)	102
CciI	TCATGA	1 cut(s)	108
Cfr13I	GGNCC	1 cut(s)	192
CviAII	CATG	4 cut(s)	109, 160, 223, 329
DdeI	CTNAG	6 cut(s)	33, 90, 141, 207, 252, 450
DpnI	GATC	7 cut(s)	9, 24, 29, 115, 164, 294, 383
DpnII	GATC	7 cut(s)	7, 22, 27, 113, 162, 292, 381
EaeI	YGGCCR	1 cut(s)	225
EciI	GGCGGA	2 cut(s)	20, 314
Ecl136II	GAGCTC	2 cut(s)	151, 322
Eco24I	GRGCYC	2 cut(s)	153, 324
Eco47I	GGWCC	1 cut(s)	192
Eco53kI	GAGCTC	2 cut(s)	151, 322
Eco57I	CTGAAG	1 cut(s)	34
EcoICRI	GAGCTC	2 cut(s)	151, 322
EcoRII	CCWGG	2 cut(s)	153, 227
EcoT38I	GRGCYC	2 cut(s)	153, 324
FaeI	CATG	4 cut(s)	112, 163, 226, 332
FaiI	YATR	5 cut(s)	110, 161, 224, 330, 423
FalI	AAGNNNNNCTT	2 cut(s)	32, 64
FaqI	GGGAC	1 cut(s)	205
FatI	CATG	4 cut(s)	108, 159, 222, 328
FbaI	TGATCA	1 cut(s)	162
Fnu4HI	GCNGC	2 cut(s)	220, 315
FokI	GGATG	4 cut(s)	80, 188, 386, 419
FriOI	GRGCYC	2 cut(s)	153, 324
Fsp4HI	GCNGC	2 cut(s)	220, 315
GluI	GCNGC	2 cut(s)	220, 315
GsuI	CTGGAG	1 cut(s)	137
HaeIII	GGCC	1 cut(s)	227
Hin1II	CATG	4 cut(s)	112, 163, 226, 332
HinfI	GANTC	2 cut(s)	123, 248
Hpy188I	TCNGA	5 cut(s)	27, 34, 253, 278, 297
Hpy188III	TCNNGA	2 cut(s)	109, 206
Hpy99I	CGWCG	1 cut(s)	23
HpyAV	CCTTC	2 cut(s)	58, 232
HpyCH4III	ACNGT	1 cut(s)	106
HpyCH4V	TGCA	1 cut(s)	130
HpyF3I	CTNAG	6 cut(s)	33, 90, 141, 207, 252, 450
Hsp92II	CATG	4 cut(s)	112, 163, 226, 332
Ksp22I	TGATCA	1 cut(s)	162
Kzo9I	GATC	7 cut(s)	7, 22, 27, 113, 162, 292, 381
LmnI	GCTCC	5 cut(s)	94, 156, 259, 319, 327
LpnPI	CCDG	5 cut(s)	140, 167, 214, 219, 241
Lsp1109I	GCAGC	1 cut(s)	301
LweI	GCATC	1 cut(s)	166
MalI	GATC	7 cut(s)	9, 24, 29, 115, 164, 294, 383
MboI	GATC	7 cut(s)	7, 22, 27, 113, 162, 292, 381
MboII	GAAGA	1 cut(s)	244
MflI	RGATCY	1 cut(s)	27
MhlI	GDGCHC	2 cut(s)	153, 324
MlsI	TGGCCA	1 cut(s)	227
MluCI	AATT	1 cut(s)	418
MluNI	TGGCCA	1 cut(s)	227
MlyI	GAGTC	2 cut(s)	132, 242
MnlI	CCTC	7 cut(s)	136, 247, 250, 262, 358, 382, 418
Mox20I	TGGCCA	1 cut(s)	227
MroXI	GAANNNNTTC	1 cut(s)	302
MscI	TGGCCA	1 cut(s)	227
MseI	TTAA	1 cut(s)	215
MslI	CAYNNNNRTG	1 cut(s)	107
Msp20I	TGGCCA	1 cut(s)	227
MspA1I	CMGCKG	1 cut(s)	314
MspCI	CTTAAG	1 cut(s)	214
MspR9I	CCNGG	2 cut(s)	155, 229
MvaI	CCWGG	2 cut(s)	155, 229
MvnI	CGCG	1 cut(s)	387
NdeII	GATC	7 cut(s)	7, 22, 27, 113, 162, 292, 381
NlaIII	CATG	4 cut(s)	112, 163, 226, 332
NlaIV	GGNNCC	1 cut(s)	193
PagI	TCATGA	1 cut(s)	108
PdmI	GAANNNNTTC	1 cut(s)	302
PfoI	TCCNGGA	1 cut(s)	153
PkrI	GCNGC	2 cut(s)	221, 316
PleI	GAGTC	2 cut(s)	131, 242
PpsI	GAGTC	2 cut(s)	131, 242
Psp124BI	GAGCTC	2 cut(s)	153, 324
Psp6I	CCWGG	2 cut(s)	153, 227
PspGI	CCWGG	2 cut(s)	153, 227
PspN4I	GGNNCC	1 cut(s)	193
PspPI	GGNCC	1 cut(s)	192
PsuI	RGATCY	1 cut(s)	27
PvuII	CAGCTG	1 cut(s)	314
RseI	CAYNNNNRTG	1 cut(s)	107
SacI	GAGCTC	2 cut(s)	153, 324
SaqAI	TTAA	1 cut(s)	215
SatI	GCNGC	2 cut(s)	220, 315
Sau3AI	GATC	7 cut(s)	7, 22, 27, 113, 162, 292, 381
Sau96I	GGNCC	1 cut(s)	192
SchI	GAGTC	2 cut(s)	132, 242
ScrFI	CCNGG	2 cut(s)	155, 229
SduI	GDGCHC	2 cut(s)	153, 324
SetI	ASST	7 cut(s)	99, 153, 264, 316, 324, 357, 441
SfaNI	GCATC	1 cut(s)	166
SinI	GGWCC	1 cut(s)	192
SmiMI	CAYNNNNRTG	1 cut(s)	107
SmlI	CTYRAG	1 cut(s)	214
SmoI	CTYRAG	1 cut(s)	214
Sse9I	AATT	1 cut(s)	418
SsiI	CCGC	5 cut(s)	5, 220, 317, 325, 385
SstI	GAGCTC	2 cut(s)	153, 324
StyD4I	CCNGG	2 cut(s)	153, 227
TaaI	ACNGT	1 cut(s)	106
TaqI	TCGA	1 cut(s)	60
TaqII	GACCGA	1 cut(s)	32
TasI	AATT	1 cut(s)	418
TauI	GCSGC	1 cut(s)	222
Tru1I	TTAA	1 cut(s)	215
Tru9I	TTAA	1 cut(s)	215
TscAI	CASTG	1 cut(s)	109
TseI	GCWGC	1 cut(s)	314
TspDTI	ATGAA	3 cut(s)	183, 251, 295
TspRI	CASTG	1 cut(s)	109
Vha464I	CTTAAG	1 cut(s)	214
VpaK11BI	GGWCC	1 cut(s)	192
XmnI	GAANNNNTTC	1 cut(s)	302

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.